Wall clock time and date at job start Sun Mar 7 2021 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99897 * 2 1 4 4 O 1.20817 * 120.00228 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00031 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47057 * 300.00329 * 5 3 2 7 7 C 1.53001 * 109.47065 * 59.99647 * 5 3 2 8 8 C 1.53003 * 109.47122 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47251 * 300.00093 * 8 7 5 10 10 H 1.08999 * 109.47360 * 299.99970 * 9 8 7 11 11 N 1.46504 * 109.47222 * 179.97438 * 9 8 7 12 12 C 1.34776 * 120.00001 * 84.99908 * 11 9 8 13 13 O 1.21574 * 119.99693 * 0.02562 * 12 11 9 14 14 C 1.47655 * 120.00080 * 179.97438 * 12 11 9 15 15 C 1.40172 * 119.97176 * 0.02562 * 14 12 11 16 16 C 1.36350 * 120.66562 * 180.27693 * 15 14 12 17 17 C 1.39325 * 120.23954 * 359.44130 * 16 15 14 18 18 N 1.37401 * 133.25982 * 180.22407 * 17 16 15 19 19 C 1.36854 * 109.98783 * 180.27615 * 18 17 16 20 20 C 1.34194 * 109.96649 * 359.97438 * 19 18 17 21 21 C 1.50700 * 126.54037 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47330 * 104.96010 * 21 20 19 23 23 Si 1.86298 * 109.47206 * 344.95896 * 21 20 19 24 24 C 1.40910 * 119.63947 * 0.52890 * 17 16 15 25 25 C 1.39186 * 119.97131 * 179.97438 * 14 12 11 26 26 C 1.53008 * 109.46773 * 60.00427 * 9 8 7 27 27 C 1.52998 * 109.46747 * 299.99290 * 26 9 8 28 28 H 1.08992 * 109.47186 * 300.00023 * 1 2 3 29 29 H 1.08999 * 109.46602 * 60.00743 * 1 2 3 30 30 H 1.09002 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47706 * 300.00474 * 7 5 3 32 32 H 1.09004 * 109.46627 * 60.00418 * 7 5 3 33 33 H 1.09000 * 109.47036 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46914 * 60.00336 * 8 7 5 35 35 H 0.97007 * 119.99783 * 265.00811 * 11 9 8 36 36 H 1.08002 * 119.66417 * 359.97438 * 15 14 12 37 37 H 1.08003 * 119.87901 * 179.69763 * 16 15 14 38 38 H 0.97003 * 125.00332 * 0.24120 * 18 17 16 39 39 H 1.07999 * 125.02000 * 180.02562 * 19 18 17 40 40 H 1.09006 * 109.46760 * 224.95924 * 21 20 19 41 41 H 0.96693 * 114.00123 * 300.00383 * 22 21 20 42 42 H 1.48503 * 110.00040 * 180.02562 * 23 21 20 43 43 H 1.48503 * 109.99972 * 301.31841 * 23 21 20 44 44 H 1.07993 * 120.30738 * 359.97438 * 25 14 12 45 45 H 1.08994 * 109.47140 * 59.99862 * 26 9 8 46 46 H 1.08998 * 109.46810 * 179.97438 * 26 9 8 47 47 H 1.09000 * 109.46900 * 180.02562 * 27 26 9 48 48 H 1.08999 * 109.47397 * 300.00464 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6418 0.6617 -1.2480 9 6 6.0750 2.1290 -1.2485 10 1 5.6853 2.6226 -2.1388 11 7 7.5380 2.2062 -1.2477 12 6 8.2171 2.1395 -2.4100 13 8 7.6154 2.0157 -3.4591 14 6 9.6915 2.2179 -2.4092 15 6 10.3845 2.3612 -1.1992 16 6 11.7456 2.4407 -1.1825 17 6 12.4673 2.3685 -2.3720 18 7 13.8093 2.4135 -2.6634 19 6 13.9986 2.3038 -4.0144 20 6 12.8146 2.1858 -4.6349 21 6 12.5894 2.0417 -6.1180 22 8 12.2434 0.6881 -6.4180 23 14 14.1473 2.5014 -7.0303 24 6 11.7824 2.2240 -3.5950 25 6 10.3922 2.1484 -3.6098 26 6 5.5275 2.8228 0.0005 27 6 3.9997 2.7422 0.0001 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.8048 -0.4643 -1.2483 32 1 3.7245 1.0750 -2.1385 33 1 6.0318 0.1677 -2.1379 34 1 6.0315 0.1680 -0.3578 35 1 8.0180 2.3052 -0.4105 36 1 9.8345 2.4140 -0.2712 37 1 12.2663 2.5558 -0.2433 38 1 14.5181 2.5095 -2.0081 39 1 14.9591 2.3104 -4.5081 40 1 11.7787 2.7012 -6.4280 41 1 12.9205 0.0446 -6.1685 42 1 13.9379 2.3641 -8.4941 43 1 14.5353 3.8967 -6.7019 44 1 9.8625 2.0368 -4.5442 45 1 5.9173 2.3292 0.8906 46 1 5.8366 3.8680 0.0003 47 1 3.6096 3.2369 0.8896 48 1 3.6099 3.2359 -0.8901 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_13287722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:34:25 Heat of formation + Delta-G solvation = -102.302508 kcal Electronic energy + Delta-G solvation = -31308.072238 eV Core-core repulsion = 26908.437302 eV Total energy + Delta-G solvation = -4399.634936 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -42.44223 -41.85668 -41.01145 -39.15024 -37.92392 -37.57260 -37.36708 -35.40866 -33.25094 -31.94659 -31.75773 -30.66528 -30.11540 -28.50913 -26.46683 -25.50130 -23.98398 -23.84983 -23.42958 -21.98667 -21.51751 -20.98989 -20.60568 -19.28991 -18.68925 -18.46120 -17.86510 -17.59287 -17.44713 -17.41605 -16.88870 -16.27307 -16.04914 -15.90120 -15.55740 -15.23064 -15.22470 -15.08895 -14.94473 -14.82395 -14.74186 -14.28835 -14.08092 -14.00629 -13.75214 -13.68060 -13.59276 -13.30842 -13.02083 -12.68958 -12.61238 -12.39729 -12.35490 -12.20048 -12.18125 -11.92098 -11.86530 -11.58646 -11.48712 -11.37359 -11.00949 -10.78690 -10.32562 -10.14591 -9.30901 -8.78972 -5.01421 -0.14530 0.22446 1.08188 1.35518 1.54102 1.69830 1.71017 1.85751 2.03211 2.09196 2.15471 2.89906 3.47565 3.53888 3.62155 3.64133 3.67320 3.78960 3.87810 3.92018 3.94299 4.07619 4.16104 4.18341 4.26304 4.27224 4.29667 4.32468 4.38455 4.42276 4.45940 4.56826 4.59262 4.63960 4.67380 4.77657 4.79331 4.92857 5.01487 5.03328 5.07720 5.09799 5.24468 5.27127 5.29394 5.34541 5.37066 5.46566 5.53481 5.59379 6.00358 6.53516 6.62392 6.63990 6.88112 7.21118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.541 6.541 5 C -0.074 4.074 6 H 0.141 0.859 7 C -0.103 4.103 8 C -0.120 4.120 9 C 0.141 3.859 10 H 0.060 0.940 11 N -0.705 5.705 12 C 0.560 3.440 13 O -0.590 6.590 14 C -0.178 4.178 15 C -0.067 4.067 16 C -0.125 4.125 17 C 0.110 3.890 18 N -0.571 5.571 19 C 0.087 3.913 20 C -0.228 4.228 21 C -0.054 4.054 22 O -0.565 6.565 23 Si 0.813 3.187 24 C -0.130 4.130 25 C -0.027 4.027 26 C -0.113 4.113 27 C -0.099 4.099 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.417 0.583 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.440 0.560 39 H 0.221 0.779 40 H 0.082 0.918 41 H 0.393 0.607 42 H -0.308 1.308 43 H -0.280 1.280 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.844 -2.609 8.639 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.093 4.093 6 H 0.159 0.841 7 C -0.141 4.141 8 C -0.159 4.159 9 C 0.037 3.963 10 H 0.078 0.922 11 N -0.357 5.357 12 C 0.349 3.651 13 O -0.471 6.471 14 C -0.183 4.183 15 C -0.087 4.087 16 C -0.145 4.145 17 C 0.000 4.000 18 N -0.175 5.175 19 C -0.040 4.040 20 C -0.236 4.236 21 C -0.162 4.162 22 O -0.373 6.373 23 Si 0.717 3.283 24 C -0.134 4.134 25 C -0.047 4.047 26 C -0.150 4.150 27 C -0.137 4.137 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.255 0.745 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.281 0.719 39 H 0.237 0.763 40 H 0.099 0.901 41 H 0.243 0.757 42 H -0.237 1.237 43 H -0.206 1.206 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.128 -1.582 7.219 11.744 hybrid contribution -1.151 0.441 0.075 1.235 sum 7.977 -1.142 7.294 10.869 Atomic orbital electron populations 1.23516 0.75162 1.05603 1.02347 1.86509 1.24663 1.33139 1.83549 1.24381 0.93058 0.80985 0.70939 1.90669 1.68166 1.37465 1.46735 1.21254 0.85026 0.99805 1.03176 0.84148 1.21430 0.95475 1.01685 0.95512 1.21845 0.94615 0.96136 1.03271 1.21049 0.79118 0.96464 0.99710 0.92179 1.45773 1.07197 1.73910 1.08859 1.18504 0.87713 0.75168 0.83683 1.90768 1.71173 1.51856 1.33316 1.19597 0.91898 1.11817 0.94941 1.20902 0.93944 0.97096 0.96710 1.20086 0.93445 1.04777 0.96170 1.18642 0.84669 1.01630 0.95044 1.41776 1.05585 1.62216 1.07915 1.22232 0.99553 0.99780 0.82448 1.20853 0.92346 1.15194 0.95158 1.24754 1.10656 0.86756 0.94061 1.86485 1.49553 1.16103 1.85158 0.94062 0.78126 0.80617 0.75485 1.19221 0.92637 1.07566 0.94017 1.20592 0.92556 0.94170 0.97336 1.21746 0.94021 1.02065 0.97206 1.21363 0.95623 0.93235 1.03511 0.91892 0.92410 0.85277 0.89339 0.92772 0.93025 0.88708 0.74466 0.81925 0.81943 0.71891 0.76313 0.90054 0.75680 1.23680 1.20632 0.87973 0.87836 0.89821 0.89943 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.40 10.47 -51.40 -0.54 -1.94 16 3 C 0.46 2.43 7.25 71.24 0.52 2.95 16 4 O -0.54 -6.41 15.73 21.99 0.35 -6.07 16 5 C -0.07 0.10 2.63 -11.54 -0.03 0.07 16 6 H 0.14 -0.95 8.14 -2.38 -0.02 -0.97 16 7 C -0.10 0.01 5.14 30.60 0.16 0.17 16 8 C -0.12 0.03 5.49 30.59 0.17 0.20 16 9 C 0.14 0.08 2.45 44.99 0.11 0.19 16 10 H 0.06 0.45 7.58 -2.39 -0.02 0.43 16 11 N -0.71 0.00 5.03 -445.58 -2.24 -2.24 16 12 C 0.56 5.02 7.73 86.73 0.67 5.69 16 13 O -0.59 -11.17 15.99 -3.95 -0.06 -11.24 16 14 C -0.18 -1.13 5.87 -20.09 -0.12 -1.24 16 15 C -0.07 0.15 9.46 22.30 0.21 0.36 16 16 C -0.12 0.47 10.00 22.09 0.22 0.69 16 17 C 0.11 -0.02 7.27 39.19 0.28 0.26 16 18 N -0.57 3.88 6.05 -187.49 -1.13 2.74 16 19 C 0.09 -0.54 10.43 82.99 0.87 0.33 16 20 C -0.23 -0.42 5.58 -18.61 -0.10 -0.52 16 21 C -0.05 -0.16 3.06 71.24 0.22 0.06 16 22 O -0.57 -2.72 12.88 -148.98 -1.92 -4.64 16 23 Si 0.81 -2.44 30.76 68.60 2.11 -0.33 16 24 C -0.13 -0.82 6.34 -20.21 -0.13 -0.95 16 25 C -0.03 -0.29 9.64 22.74 0.22 -0.07 16 26 C -0.11 0.59 5.39 30.60 0.16 0.75 16 27 C -0.10 0.11 4.49 30.59 0.14 0.25 16 28 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 29 H 0.06 0.09 8.13 -2.39 -0.02 0.07 16 30 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.09 -0.10 8.11 -2.39 -0.02 -0.12 16 32 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.42 -3.19 6.60 -92.70 -0.61 -3.80 16 36 H 0.16 -1.67 6.36 -2.91 -0.02 -1.68 16 37 H 0.16 -1.77 8.06 -2.91 -0.02 -1.79 16 38 H 0.44 -6.20 8.96 -92.71 -0.83 -7.03 16 39 H 0.22 -3.37 6.35 -2.91 -0.02 -3.39 16 40 H 0.08 0.64 7.96 -2.38 -0.02 0.62 16 41 H 0.39 -1.94 8.70 -74.06 -0.64 -2.58 16 42 H -0.31 -1.83 7.11 99.48 0.71 -1.12 16 43 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 44 H 0.10 1.66 7.64 -2.91 -0.02 1.64 16 45 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 46 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 48 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 Total: 0.00 -35.19 395.70 0.30 -34.90 By element: Atomic # 1 Polarization: -20.54 SS G_CDS: -1.03 Total: -21.56 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 4.76 Total: 10.37 kcal Atomic # 7 Polarization: 3.88 SS G_CDS: -3.37 Total: 0.51 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -2.17 Total: -23.88 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.11 Total: -0.33 kcal Total: -35.19 0.30 -34.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_13287722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.406 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds