Wall clock time and date at job start Sun Mar 7 2021 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99493 * 2 1 4 4 O 1.20819 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99678 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47080 * 299.99704 * 5 3 2 7 7 C 1.52993 * 109.47211 * 59.99827 * 5 3 2 8 8 C 1.53004 * 109.47123 * 179.97438 * 7 5 3 9 9 C 1.52994 * 109.47427 * 300.00393 * 8 7 5 10 10 H 1.08998 * 109.46746 * 299.99742 * 9 8 7 11 11 N 1.46500 * 109.47609 * 179.97438 * 9 8 7 12 12 C 1.34779 * 119.99907 * 84.99161 * 11 9 8 13 13 O 1.21687 * 120.00145 * 0.02562 * 12 11 9 14 14 C 1.46680 * 119.99552 * 180.02562 * 12 11 9 15 15 C 1.37876 * 126.23018 * 180.02562 * 14 12 11 16 16 C 1.50698 * 126.45752 * 0.02562 * 15 14 12 17 17 C 1.39838 * 107.08226 * 180.02562 * 15 14 12 18 18 C 1.35453 * 107.86773 * 0.02562 * 17 15 14 19 19 C 1.50699 * 125.56433 * 180.02562 * 18 17 15 20 20 O 1.42901 * 109.46830 * 120.02216 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 0.02653 * 19 18 17 22 22 N 1.35535 * 108.87065 * 0.26200 * 18 17 15 23 23 C 1.53001 * 109.47471 * 59.99571 * 9 8 7 24 24 C 1.53001 * 109.46982 * 180.02562 * 5 3 2 25 25 H 1.09002 * 109.47307 * 60.00315 * 1 2 3 26 26 H 1.09009 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47729 * 299.99765 * 1 2 3 28 28 H 1.08997 * 109.47210 * 299.99655 * 7 5 3 29 29 H 1.08998 * 109.47199 * 59.99950 * 7 5 3 30 30 H 1.09006 * 109.47267 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.46683 * 60.00554 * 8 7 5 32 32 H 0.97000 * 120.00058 * 265.00326 * 11 9 8 33 33 H 1.08999 * 109.46866 * 269.97503 * 16 15 14 34 34 H 1.08995 * 109.47364 * 29.97420 * 16 15 14 35 35 H 1.08993 * 109.46928 * 149.97607 * 16 15 14 36 36 H 1.07996 * 126.06588 * 180.02562 * 17 15 14 37 37 H 1.08991 * 109.47351 * 240.02364 * 19 18 17 38 38 H 0.96708 * 114.00246 * 299.99864 * 20 19 18 39 39 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 40 40 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 41 41 H 0.96993 * 125.67780 * 179.70624 * 22 18 17 42 42 H 1.08998 * 109.46996 * 60.00325 * 23 9 8 43 43 H 1.08997 * 109.47391 * 180.02562 * 23 9 8 44 44 H 1.08998 * 109.47452 * 59.99637 * 24 5 3 45 45 H 1.09005 * 109.46964 * 299.99278 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9563 0.7808 0.8892 7 6 4.1128 0.5817 -1.2501 8 6 5.6407 0.6624 -1.2510 9 6 6.0740 2.1297 -1.2511 10 1 5.6836 2.6237 -2.1409 11 7 7.5369 2.2070 -1.2514 12 6 8.2151 2.1407 -2.4142 13 8 7.6122 2.0172 -3.4640 14 6 9.6799 2.2176 -2.4143 15 6 10.4986 2.1640 -3.5224 16 6 10.0572 2.0165 -4.9557 17 6 11.8158 2.2723 -3.0655 18 6 11.7795 2.3871 -1.7163 19 6 12.9799 2.5281 -0.8161 20 8 12.8920 3.7584 -0.0944 21 14 14.5324 2.5218 -1.8458 22 7 10.4878 2.3490 -1.3076 23 6 5.5274 2.8231 -0.0016 24 6 4.0000 2.7422 0.0002 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 3.8039 -0.4636 -1.2501 29 1 3.7227 1.0759 -2.1398 30 1 6.0302 0.1680 -2.1410 31 1 6.0311 0.1683 -0.3612 32 1 8.0175 2.3057 -0.4146 33 1 10.0045 0.9586 -5.2126 34 1 9.0743 2.4704 -5.0817 35 1 10.7736 2.5139 -5.6095 36 1 12.7043 2.2657 -3.6794 37 1 13.0067 1.6956 -0.1131 38 1 12.8640 4.5438 -0.6579 39 1 15.7235 2.6597 -0.9696 40 1 14.6195 1.2610 -2.6256 41 1 10.1833 2.4071 -0.3886 42 1 5.9178 2.3291 0.8882 43 1 5.8357 3.8685 -0.0019 44 1 3.6106 3.2358 0.8906 45 1 3.6099 3.2369 -0.8894 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:36:24 Heat of formation + Delta-G solvation = -123.015269 kcal Electronic energy + Delta-G solvation = -27484.407362 eV Core-core repulsion = 23468.552674 eV Total energy + Delta-G solvation = -4015.854687 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -42.60130 -41.84678 -40.64378 -38.97006 -37.68812 -37.55390 -35.53317 -33.52606 -32.13537 -31.91058 -30.86920 -28.62939 -28.15673 -26.86266 -24.73582 -23.87509 -22.65111 -21.89392 -21.46329 -21.15914 -20.29950 -19.46718 -18.66305 -18.08120 -17.85425 -17.50036 -17.26936 -16.72865 -16.31753 -16.09511 -15.47882 -15.34035 -15.25800 -15.08480 -14.99398 -14.57553 -14.42404 -14.26504 -14.02779 -13.88053 -13.68677 -13.59349 -13.53324 -13.33483 -13.03327 -12.96206 -12.70718 -12.43351 -12.23971 -12.16003 -11.98422 -11.87762 -11.62010 -11.51624 -11.39592 -11.05602 -10.65380 -10.22974 -9.81048 -9.17950 -4.90462 0.31687 1.06725 1.24075 1.53725 1.67834 1.73267 1.92083 2.01894 2.23703 2.26914 3.44995 3.47726 3.51844 3.58178 3.63116 3.83052 3.89367 4.03626 4.13831 4.16485 4.24509 4.24640 4.26049 4.26528 4.30544 4.38912 4.43882 4.56795 4.66016 4.72973 4.74253 4.81890 4.88569 4.91410 4.99963 5.05176 5.06471 5.16167 5.20872 5.22278 5.31978 5.35892 5.43345 5.64439 5.86419 6.32559 6.49895 6.62513 6.68306 7.09164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.137 0.863 7 C -0.102 4.102 8 C -0.120 4.120 9 C 0.144 3.856 10 H 0.069 0.931 11 N -0.714 5.714 12 C 0.588 3.412 13 O -0.561 6.561 14 C -0.069 4.069 15 C -0.087 4.087 16 C -0.090 4.090 17 C -0.209 4.209 18 C 0.034 3.966 19 C -0.052 4.052 20 O -0.554 6.554 21 Si 0.800 3.200 22 N -0.512 5.512 23 C -0.114 4.114 24 C -0.099 4.099 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.409 0.591 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.117 0.883 38 H 0.399 0.601 39 H -0.295 1.295 40 H -0.286 1.286 41 H 0.428 0.572 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -0.177 3.471 4.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.094 4.094 6 H 0.155 0.845 7 C -0.140 4.140 8 C -0.158 4.158 9 C 0.040 3.960 10 H 0.087 0.913 11 N -0.365 5.365 12 C 0.377 3.623 13 O -0.440 6.440 14 C -0.183 4.183 15 C -0.096 4.096 16 C -0.147 4.147 17 C -0.233 4.233 18 C -0.085 4.085 19 C -0.162 4.162 20 O -0.362 6.362 21 Si 0.704 3.296 22 N -0.110 5.110 23 C -0.152 4.152 24 C -0.137 4.137 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.245 0.755 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.183 0.817 37 H 0.135 0.865 38 H 0.249 0.751 39 H -0.222 1.222 40 H -0.213 1.213 41 H 0.268 0.732 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.178 -0.757 3.234 4.597 hybrid contribution -0.978 -0.236 0.955 1.387 sum 2.200 -0.993 4.189 4.834 Atomic orbital electron populations 1.23518 0.75134 1.05594 1.02375 1.86508 1.24681 1.33142 1.83550 1.24362 0.93030 0.80995 0.70977 1.90672 1.68147 1.37449 1.46690 1.21250 0.85101 0.99820 1.03193 0.84543 1.21425 0.95391 1.01699 0.95534 1.21841 0.94689 0.96085 1.03232 1.21047 0.78600 0.96473 0.99867 0.91286 1.45810 1.07630 1.74586 1.08481 1.17199 0.85152 0.75901 0.84078 1.90822 1.69298 1.51411 1.32418 1.20153 0.90078 1.20146 0.87888 1.20167 0.92719 1.01716 0.94974 1.20331 1.01831 1.01969 0.90616 1.20823 0.97384 1.11884 0.93191 1.21276 0.85641 1.06695 0.94893 1.25007 1.01713 0.90000 0.99499 1.86474 1.96813 1.15584 1.37287 0.92990 0.71451 0.85823 0.79312 1.41794 1.05356 1.55190 1.08622 1.21736 0.94219 1.02018 0.97199 1.21347 0.95457 0.93240 1.03629 0.92283 0.85313 0.91965 0.89404 0.92295 0.92496 0.89345 0.75523 0.91774 0.92013 0.90026 0.81727 0.86531 0.75067 1.22242 1.21261 0.73229 0.88466 0.89847 0.90155 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.55 113.37 1.20 1.18 16 2 O -0.36 -1.06 10.47 -51.43 -0.54 -1.60 16 3 C 0.46 1.94 7.26 71.24 0.52 2.46 16 4 O -0.54 -5.83 15.73 21.99 0.35 -5.48 16 5 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 6 H 0.14 -1.00 8.14 -2.39 -0.02 -1.01 16 7 C -0.10 0.21 5.14 30.59 0.16 0.36 16 8 C -0.12 0.29 5.49 30.59 0.17 0.46 16 9 C 0.14 -0.28 2.45 44.99 0.11 -0.17 16 10 H 0.07 0.26 7.58 -2.39 -0.02 0.24 16 11 N -0.71 1.79 5.07 -446.51 -2.27 -0.47 16 12 C 0.59 2.89 7.75 86.45 0.67 3.56 16 13 O -0.56 -7.11 14.46 -4.31 -0.06 -7.17 16 14 C -0.07 -0.20 7.06 40.35 0.28 0.08 16 15 C -0.09 -0.37 6.21 -19.56 -0.12 -0.49 16 16 C -0.09 -0.41 9.83 71.24 0.70 0.29 16 17 C -0.21 0.06 9.27 22.01 0.20 0.27 16 18 C 0.03 -0.09 6.47 41.34 0.27 0.18 16 19 C -0.05 0.26 3.08 71.24 0.22 0.48 16 20 O -0.55 2.80 12.88 -148.98 -1.92 0.88 16 21 Si 0.80 -4.21 30.54 68.60 2.10 -2.12 16 22 N -0.51 1.52 5.99 -171.92 -1.03 0.49 16 23 C -0.11 0.74 5.39 30.58 0.16 0.90 16 24 C -0.10 0.24 4.49 30.58 0.14 0.38 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.13 -0.80 8.14 -2.38 -0.02 -0.82 16 27 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.09 -0.24 8.11 -2.39 -0.02 -0.26 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 32 H 0.41 -3.59 7.73 -92.71 -0.72 -4.30 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.53 6.48 -2.39 -0.02 0.52 16 35 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.17 -0.71 6.17 -2.91 -0.02 -0.73 16 37 H 0.12 -0.59 7.96 -2.39 -0.02 -0.61 16 38 H 0.40 -4.79 8.70 -74.05 -0.64 -5.43 16 39 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 40 H -0.29 -0.12 7.11 99.48 0.71 0.59 16 41 H 0.43 -3.55 8.19 -92.71 -0.76 -4.31 16 42 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.08 -0.56 8.14 -2.39 -0.02 -0.57 16 44 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 45 H 0.06 0.09 8.10 -2.38 -0.02 0.07 16 Total: 0.00 -23.40 369.10 0.22 -23.18 By element: Atomic # 1 Polarization: -16.75 SS G_CDS: -1.05 Total: -17.79 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.65 Total: 10.09 kcal Atomic # 7 Polarization: 3.31 SS G_CDS: -3.30 Total: 0.01 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -2.17 Total: -13.37 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.10 Total: -2.12 kcal Total: -23.40 0.22 -23.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.839 kcal (2) G-P(sol) polarization free energy of solvation -23.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds