Wall clock time and date at job start Sun Mar 7 2021 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 8 8 C 1.53003 * 109.47301 * 179.97438 * 7 5 3 9 9 C 1.52996 * 109.46915 * 299.99916 * 8 7 5 10 10 H 1.08994 * 109.47269 * 299.99538 * 9 8 7 11 11 N 1.46507 * 109.46742 * 179.97438 * 9 8 7 12 12 C 1.34781 * 119.99696 * 155.00353 * 11 9 8 13 13 O 1.21628 * 120.00157 * 359.97438 * 12 11 9 14 14 C 1.47264 * 119.99888 * 179.97438 * 12 11 9 15 15 C 1.36330 * 126.96905 * 179.70695 * 14 12 11 16 16 C 1.51005 * 126.78804 * 0.71908 * 15 14 12 17 17 C 1.53395 * 108.30664 * 163.85084 * 16 15 14 18 18 C 1.53155 * 109.04287 * 48.25712 * 17 16 15 19 19 C 1.53130 * 109.52984 * 290.42784 * 18 17 16 20 20 N 1.35210 * 108.66084 * 179.86146 * 15 14 12 21 21 C 1.36425 * 109.89754 * 0.41699 * 20 15 14 22 22 C 1.50698 * 125.49156 * 179.71462 * 21 20 15 23 23 O 1.42901 * 109.47241 * 330.01381 * 22 21 20 24 24 Si 1.86302 * 109.47220 * 210.01469 * 22 21 20 25 25 C 1.34488 * 109.01291 * 359.74831 * 21 20 15 26 26 C 1.53003 * 109.47207 * 60.00200 * 9 8 7 27 27 C 1.53002 * 109.46796 * 299.72392 * 5 3 2 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47066 * 299.99799 * 7 5 3 32 32 H 1.08994 * 109.47405 * 59.99969 * 7 5 3 33 33 H 1.09008 * 109.46785 * 59.99617 * 8 7 5 34 34 H 1.09001 * 109.47245 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99837 * 334.99817 * 11 9 8 36 36 H 1.09000 * 109.86472 * 44.03645 * 16 15 14 37 37 H 1.08999 * 109.52564 * 283.46621 * 16 15 14 38 38 H 1.08996 * 109.54922 * 288.38561 * 17 16 15 39 39 H 1.09008 * 109.61153 * 168.16746 * 17 16 15 40 40 H 1.08998 * 109.46383 * 170.41028 * 18 17 16 41 41 H 1.09000 * 109.45167 * 50.43452 * 18 17 16 42 42 H 1.09002 * 109.55963 * 291.13897 * 19 18 17 43 43 H 1.09002 * 109.56633 * 170.80952 * 19 18 17 44 44 H 1.09002 * 109.47052 * 90.01406 * 22 21 20 45 45 H 0.96701 * 114.00122 * 299.99997 * 23 22 21 46 46 H 1.48500 * 110.00148 * 180.02562 * 24 22 21 47 47 H 1.48506 * 109.99844 * 301.32066 * 24 22 21 48 48 H 1.08005 * 126.81641 * 180.02562 * 25 21 20 49 49 H 1.08994 * 109.47116 * 59.99825 * 26 9 8 50 50 H 1.09004 * 109.47205 * 179.97438 * 26 9 8 51 51 H 1.09008 * 109.46845 * 299.99275 * 27 5 3 52 52 H 1.08993 * 109.47452 * 60.00035 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9525 0.7785 -0.8964 7 6 4.0000 2.7422 -0.0119 8 6 5.5279 2.8223 -0.0176 9 6 6.0794 2.1323 1.2316 10 1 5.6929 2.6289 2.1216 11 7 7.5425 2.2085 1.2259 12 6 8.2251 2.1454 2.3863 13 8 7.6265 2.0256 3.4383 14 6 9.6958 2.2215 2.3805 15 6 10.5233 2.1780 3.4631 16 6 10.1139 2.0268 4.9087 17 6 11.3518 1.6247 5.7205 18 6 12.5129 2.5541 5.3545 19 6 12.9725 2.2600 3.9237 20 7 11.8020 2.2746 3.0344 21 6 11.8285 2.3913 1.6754 22 6 13.0706 2.5276 0.8330 23 8 14.0863 3.1933 1.5861 24 14 12.6793 3.5197 -0.6945 25 6 10.5674 2.3659 1.2087 26 6 5.6457 0.6651 1.2373 27 6 4.1183 0.5848 1.2427 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.6067 3.2339 -0.9017 32 1 3.6139 3.2387 0.8782 33 1 5.9145 2.3256 -0.9076 34 1 5.8369 3.8676 -0.0221 35 1 8.0198 2.3044 0.3869 36 1 9.3491 1.2553 4.9983 37 1 9.7243 2.9753 5.2781 38 1 11.6220 0.5948 5.4876 39 1 11.1357 1.7132 6.7852 40 1 13.3413 2.3889 6.0432 41 1 12.1838 3.5909 5.4242 42 1 13.4466 1.2791 3.8870 43 1 13.6830 3.0226 3.6045 44 1 13.4232 1.5378 0.5429 45 1 13.8407 4.0819 1.8781 46 1 13.8960 3.6608 -1.5341 47 1 11.6018 2.8542 -1.4702 48 1 10.2577 2.4371 0.1765 49 1 6.0323 0.1685 0.3474 50 1 6.0390 0.1733 2.1271 51 1 3.7321 1.0813 2.1329 52 1 3.8094 -0.4605 1.2467 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:37:09 Heat of formation + Delta-G solvation = -120.255995 kcal Electronic energy + Delta-G solvation = -33510.346530 eV Core-core repulsion = 29055.310115 eV Total energy + Delta-G solvation = -4455.036414 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -42.77902 -41.82113 -40.59778 -38.87902 -37.93918 -37.52400 -36.85749 -35.20150 -33.47430 -31.88144 -31.40605 -31.09329 -29.36715 -28.44619 -26.55579 -25.06027 -24.64369 -23.79687 -23.45769 -21.87636 -21.74251 -21.20878 -20.68755 -19.55974 -18.84643 -18.60557 -17.84339 -17.52024 -17.33882 -17.12008 -16.68403 -16.49875 -16.00197 -15.91308 -15.43622 -15.35356 -15.21833 -15.11057 -15.00952 -14.90439 -14.72315 -14.58788 -14.23091 -14.22509 -13.95721 -13.82665 -13.61854 -13.27978 -13.22880 -12.99314 -12.75486 -12.64067 -12.36820 -12.32032 -12.17303 -12.04365 -11.96338 -11.85311 -11.77494 -11.76312 -11.55376 -11.45133 -11.31422 -10.82023 -10.64368 -10.04436 -9.54351 -9.03717 -4.89806 0.74548 1.08531 1.09455 1.41071 1.69231 1.71261 1.83860 2.05812 2.41833 2.57091 3.33393 3.48652 3.50417 3.57808 3.61276 3.69722 3.72455 3.82364 3.84274 3.95543 4.11115 4.16312 4.21596 4.27413 4.28503 4.33269 4.34663 4.36349 4.39110 4.42387 4.44837 4.45264 4.64521 4.64634 4.68572 4.78000 4.79935 4.81186 4.84612 4.95024 4.99539 5.03257 5.05781 5.10141 5.12289 5.17798 5.23110 5.28578 5.33371 5.37246 5.61137 5.73594 6.05466 6.23821 6.60965 6.65223 6.70795 7.39809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.136 0.864 7 C -0.098 4.098 8 C -0.114 4.114 9 C 0.145 3.855 10 H 0.065 0.935 11 N -0.712 5.712 12 C 0.589 3.411 13 O -0.587 6.587 14 C -0.255 4.255 15 C 0.104 3.896 16 C -0.053 4.053 17 C -0.126 4.126 18 C -0.133 4.133 19 C 0.095 3.905 20 N -0.424 5.424 21 C -0.010 4.010 22 C -0.047 4.047 23 O -0.552 6.552 24 Si 0.797 3.203 25 C -0.170 4.170 26 C -0.119 4.119 27 C -0.102 4.102 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.395 0.605 46 H -0.296 1.296 47 H -0.271 1.271 48 H 0.165 0.835 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 0.758 -2.118 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.094 4.094 6 H 0.154 0.846 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.041 3.959 10 H 0.083 0.917 11 N -0.363 5.363 12 C 0.379 3.621 13 O -0.469 6.469 14 C -0.264 4.264 15 C -0.014 4.014 16 C -0.090 4.090 17 C -0.164 4.164 18 C -0.171 4.171 19 C -0.025 4.025 20 N -0.100 5.100 21 C -0.120 4.120 22 C -0.156 4.156 23 O -0.360 6.360 24 Si 0.700 3.300 25 C -0.194 4.194 26 C -0.158 4.158 27 C -0.140 4.140 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.128 0.872 45 H 0.245 0.755 46 H -0.223 1.223 47 H -0.197 1.197 48 H 0.182 0.818 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.511 0.415 -2.173 5.024 hybrid contribution -0.355 -0.665 0.152 0.770 sum 4.156 -0.250 -2.021 4.628 Atomic orbital electron populations 1.23515 0.75161 1.05568 1.02375 1.86510 1.24665 1.33160 1.83562 1.24362 0.93005 0.80987 0.70950 1.90672 1.68131 1.37425 1.46710 1.21250 0.85056 0.99922 1.03134 0.84591 1.21355 0.95555 0.93132 1.03554 1.21742 0.94024 1.02132 0.97266 1.20978 0.79283 0.96124 0.99560 0.91696 1.45704 1.06941 1.74640 1.08977 1.17570 0.86294 0.74743 0.83456 1.90742 1.71103 1.52549 1.32542 1.19960 0.91817 1.20712 0.93931 1.20546 0.83622 1.01157 0.96095 1.20420 0.98322 1.02975 0.87323 1.21706 0.94050 0.99550 1.01048 1.21927 0.99640 1.00725 0.94760 1.22482 0.85920 1.04771 0.89278 1.44038 1.05929 1.54060 1.05983 1.20929 0.96931 1.10820 0.83272 1.25016 0.85319 1.02852 1.02440 1.86458 1.40714 1.34639 1.74158 0.93126 0.77485 0.87182 0.72176 1.21936 0.90504 1.08823 0.98162 1.21828 0.94560 0.96434 1.02987 1.21413 0.95445 1.01585 0.95535 0.92300 0.91942 0.85339 0.90142 0.92269 0.88597 0.89740 0.75175 0.90385 0.89945 0.91925 0.89323 0.87540 0.90497 0.90310 0.86037 0.87199 0.75482 1.22310 1.19677 0.81753 0.89530 0.92803 0.92395 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.39 10.48 -51.41 -0.54 -1.93 16 3 C 0.46 2.42 7.25 71.23 0.52 2.94 16 4 O -0.54 -6.28 15.73 21.94 0.35 -5.93 16 5 C -0.07 0.07 2.63 -11.54 -0.03 0.04 16 6 H 0.14 -0.78 8.14 -2.39 -0.02 -0.80 16 7 C -0.10 0.09 4.49 30.59 0.14 0.23 16 8 C -0.11 0.50 5.39 30.59 0.16 0.67 16 9 C 0.15 0.09 2.46 44.99 0.11 0.20 16 10 H 0.06 0.41 7.58 -2.39 -0.02 0.39 16 11 N -0.71 -0.75 5.07 -445.94 -2.26 -3.01 16 12 C 0.59 4.71 7.77 86.62 0.67 5.38 16 13 O -0.59 -8.88 15.00 -4.12 -0.06 -8.94 16 14 C -0.25 -1.44 6.28 -19.12 -0.12 -1.56 16 15 C 0.10 0.52 6.57 41.69 0.27 0.79 16 16 C -0.05 -0.21 5.32 30.08 0.16 -0.05 16 17 C -0.13 0.20 5.98 30.78 0.18 0.39 16 18 C -0.13 0.68 5.92 30.69 0.18 0.86 16 19 C 0.09 -0.35 6.21 86.32 0.54 0.18 16 20 N -0.42 -0.34 3.11 -493.62 -1.54 -1.87 16 21 C -0.01 0.00 6.15 40.99 0.25 0.26 16 22 C -0.05 0.17 3.00 71.24 0.21 0.39 16 23 O -0.55 2.66 10.28 -148.98 -1.53 1.13 16 24 Si 0.80 -4.52 31.29 68.60 2.15 -2.38 16 25 C -0.17 -0.07 9.08 23.64 0.21 0.14 16 26 C -0.12 0.00 5.49 30.58 0.17 0.17 16 27 C -0.10 0.03 5.13 30.58 0.16 0.18 16 28 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.06 0.02 8.13 -2.38 -0.02 0.01 16 30 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.08 -0.06 8.10 -2.38 -0.02 -0.08 16 32 H 0.06 0.17 8.10 -2.39 -0.02 0.15 16 33 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 34 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.41 -1.79 7.73 -92.71 -0.72 -2.51 16 36 H 0.08 0.63 7.40 -2.39 -0.02 0.61 16 37 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.06 -0.03 8.12 -2.39 -0.02 -0.05 16 39 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.08 -0.37 8.11 -2.39 -0.02 -0.39 16 42 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.12 -0.83 5.68 -2.39 -0.01 -0.85 16 44 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 45 H 0.39 -4.67 8.27 -74.06 -0.61 -5.28 16 46 H -0.30 -0.46 7.11 99.48 0.71 0.25 16 47 H -0.27 0.69 6.77 99.48 0.67 1.37 16 48 H 0.17 -0.70 6.30 -2.91 -0.02 -0.71 16 49 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 51 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 52 H 0.09 -0.10 8.12 -2.39 -0.02 -0.12 16 Total: 0.00 -23.01 407.83 1.17 -21.84 By element: Atomic # 1 Polarization: -10.93 SS G_CDS: -0.38 Total: -11.31 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.99 Total: 12.41 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -3.80 Total: -4.89 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.79 Total: -15.67 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.15 Total: -2.38 kcal Total: -23.01 1.17 -21.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.413 kcal (2) G-P(sol) polarization free energy of solvation -23.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds