Wall clock time and date at job start Sun Mar 7 2021 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00034 * 2 1 4 4 O 1.20829 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00092 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 59.99932 * 5 3 2 7 7 C 1.53005 * 109.47155 * 179.97438 * 5 3 2 8 8 C 1.52999 * 109.47159 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47317 * 300.00546 * 8 7 5 10 10 H 1.09002 * 109.47153 * 299.99641 * 9 8 7 11 11 N 1.46500 * 109.47007 * 179.97438 * 9 8 7 12 12 C 1.34779 * 119.99793 * 154.99772 * 11 9 8 13 13 O 1.21624 * 120.00105 * 0.02562 * 12 11 9 14 14 C 1.47269 * 119.99541 * 180.02562 * 12 11 9 15 15 C 1.36767 * 126.93639 * 180.02562 * 14 12 11 16 16 C 1.50706 * 125.80411 * 0.02562 * 15 14 12 17 17 N 1.34662 * 108.39601 * 179.97438 * 15 14 12 18 18 C 1.36454 * 110.29694 * 359.97438 * 17 15 14 19 19 C 1.50695 * 125.57158 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.46829 * 119.97429 * 19 18 17 21 21 Si 1.86299 * 109.47104 * 359.97419 * 19 18 17 22 22 C 1.34489 * 108.85393 * 359.70925 * 18 17 15 23 23 C 1.53000 * 109.47060 * 59.99960 * 9 8 7 24 24 C 1.52997 * 109.47078 * 300.00020 * 5 3 2 25 25 H 1.09002 * 109.47347 * 59.99979 * 1 2 3 26 26 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47079 * 300.00126 * 1 2 3 28 28 H 1.09002 * 109.46935 * 60.00293 * 7 5 3 29 29 H 1.09000 * 109.47360 * 300.00319 * 7 5 3 30 30 H 1.08996 * 109.46929 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46716 * 60.00455 * 8 7 5 32 32 H 0.97004 * 120.00223 * 334.99863 * 11 9 8 33 33 H 1.09000 * 109.47000 * 90.00048 * 16 15 14 34 34 H 1.08997 * 109.46842 * 210.00323 * 16 15 14 35 35 H 1.09002 * 109.46778 * 330.00151 * 16 15 14 36 36 H 0.96991 * 124.85374 * 180.02562 * 17 15 14 37 37 H 1.08996 * 109.47261 * 239.97504 * 19 18 17 38 38 H 0.96698 * 114.00135 * 299.99777 * 20 19 18 39 39 H 1.48504 * 110.00013 * 58.68434 * 21 19 18 40 40 H 1.48500 * 109.99745 * 179.97438 * 21 19 18 41 41 H 1.07996 * 126.83726 * 180.26684 * 22 18 17 42 42 H 1.08992 * 109.47399 * 59.99823 * 23 9 8 43 43 H 1.09004 * 109.46724 * 180.02562 * 23 9 8 44 44 H 1.09002 * 109.46695 * 299.99519 * 24 5 3 45 45 H 1.08993 * 109.47194 * 59.99505 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.0002 2.7421 -0.0011 8 6 5.5280 2.8222 -0.0011 9 6 6.0751 2.1290 1.2484 10 1 5.6854 2.6234 2.1382 11 7 7.5381 2.2052 1.2480 12 6 8.2166 2.1392 2.4107 13 8 7.6143 2.0159 3.4602 14 6 9.6872 2.2164 2.4104 15 6 10.5132 2.1641 3.4992 16 6 10.0737 2.0146 4.9330 17 7 11.7862 2.2678 3.0723 18 6 11.8214 2.3880 1.7135 19 6 13.0677 2.5264 0.8778 20 8 13.1460 1.4378 -0.0446 21 14 14.5644 2.5094 1.9871 22 6 10.5624 2.3568 1.2417 23 6 5.6413 0.6618 1.2488 24 6 4.1139 0.5810 1.2483 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.6108 3.2364 0.8890 29 1 3.6101 3.2361 -0.8910 30 1 5.8370 3.8674 -0.0019 31 1 5.9178 2.3278 -0.8909 32 1 8.0185 2.3032 0.4110 33 1 10.0217 0.9562 5.1886 34 1 10.7907 2.5114 5.5865 35 1 9.0907 2.4679 5.0607 36 1 12.5665 2.2576 3.6482 37 1 13.0338 3.4669 0.3278 38 1 13.1797 0.5676 0.3759 39 1 14.6050 1.2457 2.7660 40 1 15.8001 2.6447 1.1748 41 1 10.2564 2.4251 0.2082 42 1 6.0310 0.1674 0.3590 43 1 6.0307 0.1681 2.1392 44 1 3.7245 1.0751 2.1385 45 1 3.8048 -0.4642 1.2482 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 01:40:02 Heat of formation + Delta-G solvation = -121.354520 kcal Electronic energy + Delta-G solvation = -27430.108126 eV Core-core repulsion = 23414.325455 eV Total energy + Delta-G solvation = -4015.782672 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.46682 -41.81319 -40.53900 -38.85743 -37.87964 -37.52023 -35.25753 -32.78883 -32.46375 -31.86234 -30.84673 -28.92565 -28.49421 -25.85590 -24.68673 -23.79588 -23.11544 -21.86005 -21.39276 -21.16873 -20.28117 -18.73070 -18.62976 -17.88040 -17.75646 -17.50358 -17.18942 -16.74345 -16.61035 -15.94517 -15.60985 -15.29646 -15.21074 -14.99296 -14.81861 -14.56572 -14.48219 -14.24216 -13.96580 -13.91646 -13.82128 -13.59317 -13.35840 -13.27082 -12.98963 -12.74788 -12.63221 -12.60040 -12.34999 -12.17439 -12.13648 -11.85042 -11.55203 -11.45415 -11.31506 -10.94026 -10.60402 -10.08996 -9.77420 -9.13239 -5.05622 0.72950 1.09701 1.12422 1.32097 1.46661 1.71256 1.83174 2.06523 2.43677 2.56855 3.34473 3.50483 3.58987 3.67168 3.71471 3.90036 3.95451 4.10597 4.14186 4.20904 4.26013 4.27790 4.28917 4.33945 4.37440 4.45131 4.53475 4.57279 4.65254 4.69073 4.72923 4.79914 4.80509 4.95690 5.05608 5.06016 5.11187 5.12405 5.25023 5.28501 5.34324 5.38169 5.62324 5.72089 5.88234 6.41714 6.46968 6.65483 6.71028 7.40205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.136 0.864 7 C -0.098 4.098 8 C -0.114 4.114 9 C 0.145 3.855 10 H 0.065 0.935 11 N -0.712 5.712 12 C 0.587 3.413 13 O -0.586 6.586 14 C -0.264 4.264 15 C 0.117 3.883 16 C -0.097 4.097 17 N -0.535 5.535 18 C -0.022 4.022 19 C -0.045 4.045 20 O -0.539 6.539 21 Si 0.753 3.247 22 C -0.136 4.136 23 C -0.119 4.119 24 C -0.102 4.102 25 H 0.061 0.939 26 H 0.129 0.871 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.426 0.574 37 H 0.140 0.860 38 H 0.387 0.613 39 H -0.276 1.276 40 H -0.294 1.294 41 H 0.159 0.841 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -0.710 -0.955 4.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.430 6.430 5 C -0.094 4.094 6 H 0.154 0.846 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.040 3.960 10 H 0.083 0.917 11 N -0.363 5.363 12 C 0.378 3.622 13 O -0.468 6.468 14 C -0.274 4.274 15 C -0.003 4.003 16 C -0.154 4.154 17 N -0.135 5.135 18 C -0.131 4.131 19 C -0.155 4.155 20 O -0.347 6.347 21 Si 0.657 3.343 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.140 4.140 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.237 0.763 39 H -0.203 1.203 40 H -0.221 1.221 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.757 -0.426 -0.418 4.795 hybrid contribution -0.268 -0.962 -0.479 1.107 sum 4.489 -1.388 -0.897 4.784 Atomic orbital electron populations 1.23517 0.75158 1.05583 1.02367 1.86509 1.24665 1.33143 1.83556 1.24364 0.93011 0.80987 0.70941 1.90671 1.68141 1.37447 1.46729 1.21251 0.85068 0.99839 1.03210 0.84592 1.21354 0.95534 0.93212 1.03511 1.21735 0.94083 1.01985 0.97380 1.20971 0.79363 0.96184 0.99437 0.91699 1.45720 1.06950 1.74547 1.09059 1.17613 0.86460 0.74754 0.83419 1.90730 1.70897 1.52562 1.32607 1.20211 0.91926 1.21020 0.94236 1.20557 0.83426 0.99722 0.96590 1.20609 1.03240 1.03628 0.87924 1.41691 1.07493 1.57250 1.07089 1.20620 0.97508 1.11961 0.82970 1.24592 1.00132 0.93734 0.97074 1.86626 1.95183 1.17849 1.35016 0.94642 0.74107 0.85409 0.80163 1.21965 0.90613 1.05422 0.97990 1.21823 0.94524 0.96329 1.03062 1.21417 0.95512 1.01587 0.95473 0.91971 0.85306 0.92296 0.92273 0.90238 0.89995 0.88632 0.75179 0.90095 0.88950 0.89979 0.73305 0.84259 0.76346 1.20274 1.22129 0.82381 0.89523 0.92614 0.92375 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.35 10.47 -51.38 -0.54 -1.89 16 3 C 0.46 2.40 7.26 71.24 0.52 2.92 16 4 O -0.54 -6.31 15.73 21.95 0.35 -5.96 16 5 C -0.07 0.08 2.63 -11.54 -0.03 0.05 16 6 H 0.14 -0.79 8.14 -2.39 -0.02 -0.80 16 7 C -0.10 0.08 4.50 30.60 0.14 0.22 16 8 C -0.11 0.48 5.39 30.59 0.16 0.64 16 9 C 0.15 0.05 2.46 44.99 0.11 0.16 16 10 H 0.06 0.39 7.58 -2.39 -0.02 0.37 16 11 N -0.71 -0.39 5.07 -445.95 -2.26 -2.65 16 12 C 0.59 4.00 7.77 86.62 0.67 4.67 16 13 O -0.59 -7.98 14.47 -4.11 -0.06 -8.04 16 14 C -0.26 -0.98 6.29 -19.04 -0.12 -1.10 16 15 C 0.12 0.15 7.17 41.78 0.30 0.45 16 16 C -0.10 0.02 9.88 71.24 0.70 0.72 16 17 N -0.53 1.96 5.41 -171.06 -0.93 1.03 16 18 C -0.02 0.06 6.11 40.98 0.25 0.31 16 19 C -0.05 0.22 2.98 71.23 0.21 0.43 16 20 O -0.54 0.88 12.86 -148.98 -1.92 -1.03 16 21 Si 0.75 -4.80 30.94 68.60 2.12 -2.68 16 22 C -0.14 0.05 10.43 23.62 0.25 0.30 16 23 C -0.12 0.06 5.49 30.58 0.17 0.23 16 24 C -0.10 0.06 5.13 30.58 0.16 0.22 16 25 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 28 H 0.06 0.18 8.10 -2.39 -0.02 0.16 16 29 H 0.08 -0.03 8.10 -2.39 -0.02 -0.05 16 30 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.41 -1.86 7.73 -92.71 -0.72 -2.57 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.08 0.41 6.46 -2.39 -0.02 0.40 16 36 H 0.43 -3.83 6.70 -92.72 -0.62 -4.45 16 37 H 0.14 -0.96 7.96 -2.39 -0.02 -0.98 16 38 H 0.39 -2.56 8.70 -74.06 -0.64 -3.20 16 39 H -0.28 0.78 7.11 99.48 0.71 1.49 16 40 H -0.29 -0.57 7.11 99.48 0.71 0.13 16 41 H 0.16 -0.58 7.69 -2.91 -0.02 -0.60 16 42 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.09 -0.13 8.11 -2.39 -0.02 -0.15 16 Total: 0.00 -23.11 369.90 0.54 -22.58 By element: Atomic # 1 Polarization: -11.86 SS G_CDS: -0.91 Total: -12.77 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 4.69 Total: 11.41 kcal Atomic # 7 Polarization: 1.57 SS G_CDS: -3.19 Total: -1.62 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -2.17 Total: -16.92 kcal Atomic # 14 Polarization: -4.80 SS G_CDS: 2.12 Total: -2.68 kcal Total: -23.11 0.54 -22.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.780 kcal (2) G-P(sol) polarization free energy of solvation -23.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds