Wall clock time and date at job start Sun Mar 7 2021 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86303 * 109.46977 * 2 1 4 4 H 1.48497 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47209 * 299.99861 * 3 2 1 6 6 H 1.48503 * 109.47073 * 60.00065 * 3 2 1 7 7 C 1.50692 * 109.47191 * 120.00176 * 2 1 3 8 8 C 1.38404 * 119.83073 * 65.00078 * 7 2 1 9 9 C 1.37892 * 120.17534 * 180.02562 * 8 7 2 10 10 C 1.39839 * 119.82360 * 359.97438 * 9 8 7 11 11 C 1.47203 * 120.16826 * 179.97438 * 10 9 8 12 12 C 1.34805 * 120.00250 * 180.02562 * 11 10 9 13 13 C 1.46426 * 120.00439 * 180.02562 * 12 11 10 14 14 O 1.21695 * 119.99718 * 354.09199 * 13 12 11 15 15 N 1.34774 * 120.00392 * 174.08870 * 13 12 11 16 16 C 1.44412 * 116.97065 * 359.47541 * 15 13 12 17 17 C 1.52110 * 113.54237 * 226.23108 * 16 15 13 18 18 S 1.81455 * 110.11210 * 313.44117 * 17 16 15 19 19 O 1.42100 * 110.75643 * 297.85904 * 18 17 16 20 20 O 1.42099 * 110.75527 * 160.37214 * 18 17 16 21 21 N 1.67184 * 102.97030 * 49.11576 * 18 17 16 22 22 C 1.45396 * 118.13357 * 127.77845 * 21 18 17 23 23 C 1.51785 * 113.77558 * 183.86057 * 22 21 18 24 24 O 1.42697 * 110.47615 * 328.71500 * 23 22 21 25 25 C 1.42690 * 112.71322 * 64.17512 * 24 23 22 26 26 C 1.45057 * 116.97383 * 179.47182 * 15 13 12 27 27 C 1.39835 * 119.66083 * 0.25547 * 10 9 8 28 28 C 1.37892 * 119.82408 * 359.53223 * 27 10 9 29 29 H 0.96700 * 114.00092 * 299.99655 * 1 2 3 30 30 H 1.08999 * 109.47144 * 240.00128 * 2 1 3 31 31 H 1.08009 * 119.90964 * 359.97438 * 8 7 2 32 32 H 1.07995 * 120.08787 * 179.97438 * 9 8 7 33 33 H 1.08004 * 119.99939 * 359.97438 * 11 10 9 34 34 H 1.08004 * 119.99811 * 359.97438 * 12 11 10 35 35 H 1.09000 * 108.66899 * 105.18058 * 16 15 13 36 36 H 1.09000 * 108.56080 * 347.20703 * 16 15 13 37 37 H 1.09006 * 109.36155 * 193.24990 * 17 16 15 38 38 H 1.08998 * 109.36308 * 73.64452 * 17 16 15 39 39 H 1.08996 * 108.62219 * 62.74903 * 22 21 18 40 40 H 1.09003 * 108.51101 * 304.89367 * 22 21 18 41 41 H 1.09001 * 109.27136 * 88.95865 * 23 22 21 42 42 H 1.09002 * 109.27229 * 208.46653 * 23 22 21 43 43 H 1.09000 * 109.34955 * 174.75885 * 25 24 23 44 44 H 1.09003 * 109.34806 * 55.22126 * 25 24 23 45 45 H 1.08993 * 106.83717 * 251.91858 * 26 15 13 46 46 H 1.07998 * 120.08602 * 179.73290 * 27 10 9 47 47 H 1.08002 * 119.91472 * 180.21221 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5550 2.4565 1.2125 7 6 1.9314 -0.7104 1.2304 8 6 1.6825 -2.0619 1.3949 9 6 2.1384 -2.7189 2.5182 10 6 2.8543 -2.0162 3.4924 11 6 3.3441 -2.7099 4.6948 12 6 4.0334 -2.0290 5.6320 13 6 4.5211 -2.7192 6.8279 14 8 4.2135 -3.8793 7.0287 15 7 5.3106 -2.0696 7.7060 16 6 5.6442 -0.6989 7.3974 17 6 7.1204 -0.3780 7.5752 18 16 7.7155 -1.0354 9.1584 19 8 7.0302 -0.4284 10.2452 20 8 9.1314 -1.1549 9.1537 21 7 7.1615 -2.6127 9.1417 22 6 8.1184 -3.6781 9.3933 23 6 7.5307 -5.0716 9.2638 24 8 6.1531 -5.0689 9.6357 25 6 5.3490 -4.2738 8.7655 26 6 5.7462 -2.8122 8.8734 27 6 3.0976 -0.6498 3.3212 28 6 2.6389 -0.0079 2.1903 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 -0.8900 31 1 1.1290 -2.6032 0.6417 32 1 1.9430 -3.7734 2.6453 33 1 3.1503 -3.7642 4.8265 34 1 4.2268 -0.9746 5.5005 35 1 5.0640 -0.0437 8.0472 36 1 5.3657 -0.4985 6.3628 37 1 7.2600 0.7029 7.5574 38 1 7.6886 -0.8273 6.7607 39 1 8.5140 -3.5596 10.4020 40 1 8.9403 -3.5796 8.6842 41 1 7.6237 -5.4066 8.2307 42 1 8.0775 -5.7545 9.9139 43 1 4.3003 -4.3842 9.0413 44 1 5.4871 -4.6105 7.7380 45 1 5.2016 -2.4075 9.7264 46 1 3.6460 -0.0994 4.0713 47 1 2.8289 1.0466 2.0550 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14482368_12360594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:23:27 Heat of formation + Delta-G solvation = -67.520964 kcal Electronic energy + Delta-G solvation = -33847.154995 eV Core-core repulsion = 29205.842616 eV Total energy + Delta-G solvation = -4641.312380 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 382.125 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.44569 -40.84338 -39.83364 -38.51187 -37.97315 -37.82544 -37.16901 -35.80856 -35.37510 -33.21995 -32.48354 -32.04899 -31.05594 -28.51188 -27.24714 -26.06359 -25.18082 -24.39536 -23.81833 -22.32039 -21.98209 -20.52731 -19.93116 -19.50138 -19.12509 -18.65644 -18.02891 -17.59764 -17.50385 -17.27716 -17.10552 -16.96721 -16.58235 -16.44196 -16.23336 -16.12201 -15.61314 -15.41742 -15.35629 -15.21024 -15.01630 -14.89191 -14.59910 -14.50101 -14.42225 -14.05153 -13.91788 -13.57570 -13.38626 -13.32866 -13.27670 -13.18568 -13.12131 -12.46697 -12.37068 -12.33497 -12.19820 -12.03099 -11.93546 -11.72759 -11.54811 -11.04092 -10.62116 -10.57605 -10.53239 -10.19765 -9.68617 -9.48916 -1.12082 -0.81391 0.17032 0.61818 0.99183 1.02448 1.28265 1.36948 1.43586 1.77644 1.86630 2.43062 2.58539 2.72767 2.85600 2.99435 3.10572 3.22985 3.31068 3.34416 3.38602 3.53562 3.56501 3.66968 3.72221 3.82553 3.89538 3.93011 4.02818 4.10040 4.12977 4.21938 4.23449 4.25393 4.32449 4.39407 4.56660 4.61578 4.63365 4.70100 4.75979 4.82981 4.87653 4.92502 5.11473 5.18708 5.24706 5.28048 5.36036 5.67217 5.79494 6.11364 6.38539 6.72711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.084 4.084 3 Si 0.949 3.051 4 H -0.250 1.250 5 H -0.252 1.252 6 H -0.251 1.251 7 C -0.103 4.103 8 C -0.092 4.092 9 C -0.088 4.088 10 C -0.080 4.080 11 C 0.004 3.996 12 C -0.236 4.236 13 C 0.552 3.448 14 O -0.517 6.517 15 N -0.621 5.621 16 C 0.115 3.885 17 C -0.642 4.642 18 S 2.599 3.401 19 O -0.936 6.936 20 O -0.942 6.942 21 N -0.985 5.985 22 C 0.093 3.907 23 C 0.058 3.942 24 O -0.374 6.374 25 C 0.058 3.942 26 C 0.338 3.662 27 C -0.093 4.093 28 C -0.128 4.128 29 H 0.377 0.623 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.130 0.870 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 2.185 -5.406 5.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.174 1.174 5 H -0.176 1.176 6 H -0.175 1.175 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.106 4.106 10 C -0.080 4.080 11 C -0.016 4.016 12 C -0.256 4.256 13 C 0.344 3.656 14 O -0.396 6.396 15 N -0.358 5.358 16 C -0.009 4.009 17 C -0.772 4.772 18 S 2.693 3.307 19 O -0.926 6.926 20 O -0.932 6.932 21 N -0.826 5.826 22 C -0.032 4.032 23 C -0.021 4.021 24 O -0.291 6.291 25 C -0.019 4.019 26 C 0.147 3.853 27 C -0.110 4.110 28 C -0.146 4.146 29 H 0.225 0.775 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.147 0.853 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.312 2.422 -4.923 5.495 hybrid contribution -0.114 0.300 -0.353 0.477 sum -0.426 2.722 -5.275 5.952 Atomic orbital electron populations 1.86543 1.16847 1.81580 1.49143 1.25042 0.85362 1.10771 0.98327 0.85675 0.80545 0.75191 0.81389 1.17358 1.17604 1.17497 1.20535 0.98242 0.95086 0.96491 1.21031 0.98619 0.93628 0.97732 1.21492 0.95829 1.00251 0.92981 1.19038 1.00361 0.93633 0.94965 1.22496 0.89052 1.00126 0.89884 1.22998 1.05737 1.01208 0.95692 1.18552 0.78364 0.85988 0.82656 1.90825 1.56941 1.16246 1.75635 1.47743 1.50598 1.12872 1.24585 1.20763 0.91945 0.82235 1.05954 1.30586 1.06781 1.14661 1.25149 1.05614 0.74499 0.73748 0.76852 1.93661 1.75622 1.75524 1.47817 1.93643 1.27868 1.84697 1.86986 1.57154 1.14823 1.24386 1.86218 1.21384 0.90556 0.88524 1.02733 1.22472 0.83588 0.94497 1.01556 1.88120 1.17735 1.68143 1.55140 1.23891 0.95758 0.85448 0.96780 1.20620 0.80705 0.97194 0.86745 1.21312 0.98806 0.93618 0.97313 1.21018 0.99247 0.99865 0.94486 0.77546 0.86186 0.84828 0.84851 0.84132 0.84510 0.89031 0.86610 0.82831 0.83878 0.90549 0.89979 0.92439 0.87185 0.86227 0.87354 0.89423 0.85266 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.65 12.83 -35.23 -0.45 0.20 16 2 C -0.08 0.18 2.80 36.00 0.10 0.28 16 3 Si 0.95 -2.08 25.12 -169.99 -4.27 -6.35 16 4 H -0.25 0.41 7.11 56.52 0.40 0.81 16 5 H -0.25 0.09 7.11 56.52 0.40 0.50 16 6 H -0.25 0.54 7.04 56.52 0.40 0.94 16 7 C -0.10 0.17 5.36 -104.50 -0.56 -0.39 16 8 C -0.09 0.15 9.66 -39.65 -0.38 -0.24 16 9 C -0.09 0.17 9.80 -39.11 -0.38 -0.21 16 10 C -0.08 0.16 5.87 -105.06 -0.62 -0.46 16 11 C 0.00 -0.01 9.46 -37.16 -0.35 -0.36 16 12 C -0.24 0.64 8.49 -37.50 -0.32 0.32 16 13 C 0.55 -0.38 7.33 -12.97 -0.10 -0.47 16 14 O -0.52 -0.88 11.15 5.19 0.06 -0.82 16 15 N -0.62 0.89 3.09 -175.84 -0.54 0.35 16 16 C 0.12 -0.47 6.02 -5.61 -0.03 -0.50 16 17 C -0.64 2.67 6.77 36.70 0.25 2.91 16 18 S 2.60 0.96 5.70 -107.50 -0.61 0.35 16 19 O -0.94 -3.47 18.02 -57.50 -1.04 -4.51 16 20 O -0.94 -3.01 16.74 -57.50 -0.96 -3.97 16 21 N -0.98 -0.56 3.49 -114.24 -0.40 -0.95 16 22 C 0.09 0.01 5.86 -5.25 -0.03 -0.02 16 23 C 0.06 -0.01 6.85 36.54 0.25 0.24 16 24 O -0.37 -0.99 10.82 -35.23 -0.38 -1.37 16 25 C 0.06 0.09 4.59 36.57 0.17 0.26 16 26 C 0.34 0.18 3.59 -130.94 -0.47 -0.29 16 27 C -0.09 0.23 9.41 -39.11 -0.37 -0.13 16 28 C -0.13 0.27 8.65 -39.65 -0.34 -0.07 16 29 H 0.38 -1.64 8.70 45.56 0.40 -1.24 16 30 H 0.12 -0.34 7.96 -51.93 -0.41 -0.76 16 31 H 0.13 -0.31 8.06 -52.48 -0.42 -0.73 16 32 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 33 H 0.14 -0.28 7.53 -52.48 -0.40 -0.67 16 34 H 0.14 -0.73 3.80 -52.48 -0.20 -0.93 16 35 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 36 H 0.12 -0.74 4.85 -51.93 -0.25 -1.00 16 37 H 0.15 -1.01 8.14 -51.92 -0.42 -1.44 16 38 H 0.14 -0.76 8.14 -51.92 -0.42 -1.18 16 39 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.08 -0.08 7.73 -51.93 -0.40 -0.48 16 41 H 0.06 -0.06 8.07 -51.93 -0.42 -0.48 16 42 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 43 H 0.12 0.21 7.44 -51.93 -0.39 -0.17 16 44 H 0.11 0.22 5.39 -55.84 -0.30 -0.08 16 45 H 0.09 0.08 8.12 -51.93 -0.42 -0.35 16 46 H 0.13 -0.63 6.17 -52.49 -0.32 -0.96 16 47 H 0.12 -0.40 4.84 -52.49 -0.25 -0.66 16 LS Contribution 376.14 15.07 5.67 5.67 Total: 0.00 -10.94 376.14 -11.25 -22.19 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: -5.13 Total: -11.66 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.19 Total: 0.88 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -0.94 Total: -0.60 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -2.77 Total: -10.47 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: -4.27 Total: -6.35 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -0.61 Total: 0.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -10.94 -11.25 -22.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14482368_12360594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -10.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds