Wall clock time and date at job start Sun Mar 7 2021 02:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.53001 * 109.46965 * 119.99697 * 2 1 3 5 5 H 1.08998 * 109.47393 * 299.99909 * 4 2 1 6 6 C 1.52998 * 109.47035 * 60.00349 * 4 2 1 7 7 C 1.53001 * 109.47035 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47088 * 300.00022 * 7 6 4 9 9 H 1.09007 * 109.46847 * 299.99982 * 8 7 6 10 10 N 1.46500 * 109.46923 * 180.02562 * 8 7 6 11 11 C 1.34778 * 119.99923 * 85.00432 * 10 8 7 12 12 O 1.21279 * 120.00335 * 359.97438 * 11 10 8 13 13 C 1.50706 * 119.99561 * 179.97438 * 11 10 8 14 14 C 1.53003 * 109.47110 * 299.99408 * 13 11 10 15 15 O 1.42901 * 109.46777 * 179.97438 * 13 11 10 16 16 C 1.35901 * 117.00060 * 204.91544 * 15 13 11 17 17 C 1.38735 * 120.05363 * 174.25677 * 16 15 13 18 18 C 1.38153 * 119.93974 * 179.69726 * 17 16 15 19 19 C 1.38269 * 120.05081 * 0.59955 * 18 17 16 20 20 C 1.50703 * 119.94027 * 179.70136 * 19 18 17 21 21 O 1.42900 * 109.47389 * 119.97434 * 20 19 18 22 22 Si 1.86303 * 109.47045 * 359.97297 * 20 19 18 23 23 C 1.38265 * 120.11775 * 359.67223 * 19 18 17 24 24 C 1.38153 * 120.05090 * 0.02766 * 23 19 18 25 25 C 1.52998 * 109.47201 * 60.00079 * 8 7 6 26 26 C 1.53001 * 109.47035 * 299.99953 * 25 8 7 27 27 H 1.08992 * 109.47661 * 300.00046 * 1 2 3 28 28 H 1.09004 * 109.46917 * 60.00664 * 1 2 3 29 29 H 1.09008 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47882 * 239.99929 * 2 1 3 31 31 H 1.09006 * 109.47387 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47501 * 299.99832 * 3 2 1 33 33 H 1.09007 * 109.47300 * 59.99881 * 3 2 1 34 34 H 1.08994 * 109.47130 * 300.00132 * 6 4 2 35 35 H 1.09003 * 109.47391 * 60.00285 * 6 4 2 36 36 H 1.08996 * 109.47604 * 60.00055 * 7 6 4 37 37 H 1.08999 * 109.47076 * 180.02562 * 7 6 4 38 38 H 0.97002 * 119.99811 * 264.99494 * 10 8 7 39 39 H 1.08994 * 109.47615 * 59.99999 * 13 11 10 40 40 H 1.09002 * 109.47032 * 300.00198 * 14 13 11 41 41 H 1.08995 * 109.47097 * 59.99857 * 14 13 11 42 42 H 1.08997 * 109.46813 * 180.02562 * 14 13 11 43 43 H 1.07993 * 120.02863 * 359.97438 * 17 16 15 44 44 H 1.07998 * 119.97326 * 180.31709 * 18 17 16 45 45 H 1.08998 * 109.46815 * 239.97779 * 20 19 18 46 46 H 0.96697 * 113.99941 * 179.97438 * 21 20 19 47 47 H 1.48497 * 110.00012 * 298.68156 * 22 20 19 48 48 H 1.48502 * 110.00170 * 60.00438 * 22 20 19 49 49 H 1.07996 * 119.97303 * 180.02562 * 23 19 18 50 50 H 1.07994 * 120.02197 * 180.02562 * 24 23 19 51 51 H 1.09001 * 109.46922 * 180.02562 * 25 8 7 52 52 H 1.08992 * 109.46971 * 59.99830 * 25 8 7 53 53 H 1.08998 * 109.47393 * 300.00440 * 26 25 8 54 54 H 1.08999 * 109.47076 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 2.0404 -2.8851 2.4983 8 6 3.5705 -2.8850 2.4977 9 1 3.9335 -3.3988 1.6075 10 7 4.0593 -3.5763 3.6933 11 6 4.1881 -4.9179 3.6907 12 8 3.8990 -5.5529 2.6987 13 6 4.6914 -5.6289 4.9205 14 6 6.0943 -5.1235 5.2634 15 8 4.7389 -7.0352 4.6716 16 6 4.6565 -7.8560 5.7516 17 6 4.5762 -9.2298 5.5757 18 6 4.4989 -10.0624 6.6754 19 6 4.4890 -9.5268 7.9501 20 6 4.3978 -10.4370 9.1478 21 8 5.5515 -10.2572 9.9717 22 14 4.3126 -12.2082 8.5766 23 6 4.5634 -8.1576 8.1279 24 6 4.6471 -7.3212 7.0316 25 6 4.0804 -1.4425 2.4977 26 6 3.5700 -0.7211 1.2487 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 0.4400 -2.1637 1.2492 35 1 1.8934 -2.6776 0.3594 36 1 1.6775 -2.3714 3.3885 37 1 1.6775 -3.9129 2.4981 38 1 4.2903 -3.0684 4.4868 39 1 4.0196 -5.4305 5.7555 40 1 6.7662 -5.3220 4.4284 41 1 6.0578 -4.0509 5.4532 42 1 6.4585 -5.6381 6.1526 43 1 4.5786 -9.6482 4.5801 44 1 4.4415 -11.1323 6.5392 45 1 3.5017 -10.1962 9.7196 46 1 5.5599 -10.8126 10.7632 47 1 3.1000 -12.4159 7.7449 48 1 5.5288 -12.5491 7.7955 49 1 4.5559 -7.7418 9.1246 50 1 4.7055 -6.2519 7.1710 51 1 5.1705 -1.4425 2.4968 52 1 3.7174 -0.9289 3.3878 53 1 3.9329 -1.2348 0.3585 54 1 3.9329 0.3067 1.2490 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_10157680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:43 Heat of formation + Delta-G solvation = -95.388604 kcal Electronic energy + Delta-G solvation = -30818.061906 eV Core-core repulsion = 26720.900447 eV Total energy + Delta-G solvation = -4097.161459 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.213 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95067 -41.02908 -39.92018 -38.99095 -37.25302 -36.72648 -34.57979 -33.10813 -32.25454 -31.94521 -31.59743 -29.39455 -28.02726 -26.74443 -25.59409 -24.45629 -23.63202 -23.50774 -22.34199 -21.53245 -21.12596 -20.60544 -19.60322 -18.71194 -18.29029 -17.52580 -16.99494 -16.93560 -16.84740 -16.35553 -16.13151 -15.68782 -15.59774 -15.25384 -15.16329 -15.03589 -14.62733 -14.61694 -14.46716 -14.41234 -14.21176 -13.96714 -13.91059 -13.57682 -13.41132 -13.36522 -13.09296 -12.99008 -12.81512 -12.69357 -12.47026 -12.33535 -12.24958 -12.12765 -12.06389 -12.00113 -11.87575 -11.64776 -11.34573 -11.22848 -11.00087 -10.84418 -10.30568 -10.21559 -10.17730 -9.33386 -4.97117 0.06093 0.17285 1.30552 1.33625 1.42962 1.61864 1.96867 2.39563 2.47950 3.36417 3.40470 3.55910 3.62101 3.66196 3.67983 3.69848 3.76189 3.77827 3.89556 4.00260 4.08780 4.12303 4.16838 4.26373 4.29880 4.35578 4.41921 4.46524 4.48340 4.51487 4.56465 4.60722 4.63316 4.65243 4.77335 4.81289 4.81838 4.97469 4.99403 4.99892 5.01259 5.05206 5.06343 5.11847 5.13479 5.16505 5.17982 5.26683 5.32008 5.32988 5.35408 5.44052 5.52010 5.53382 5.61160 6.14815 6.39443 6.92926 7.05184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.112 4.112 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.060 0.940 10 N -0.703 5.703 11 C 0.516 3.484 12 O -0.571 6.571 13 C 0.063 3.937 14 C -0.172 4.172 15 O -0.313 6.313 16 C 0.122 3.878 17 C -0.163 4.163 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.067 4.067 21 O -0.563 6.563 22 Si 0.766 3.234 23 C -0.050 4.050 24 C -0.202 4.202 25 C -0.116 4.116 26 C -0.113 4.113 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.419 0.581 39 H 0.128 0.872 40 H 0.059 0.941 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.099 0.901 46 H 0.404 0.596 47 H -0.292 1.292 48 H -0.302 1.302 49 H 0.154 0.846 50 H 0.164 0.836 51 H 0.077 0.923 52 H 0.089 0.911 53 H 0.055 0.945 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 5.379 8.146 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.078 0.922 10 N -0.356 5.356 11 C 0.302 3.698 12 O -0.449 6.449 13 C 0.003 3.997 14 C -0.230 4.230 15 O -0.226 6.226 16 C 0.077 3.923 17 C -0.181 4.181 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.177 4.177 21 O -0.373 6.373 22 Si 0.674 3.326 23 C -0.068 4.068 24 C -0.220 4.220 25 C -0.154 4.154 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.117 0.883 46 H 0.255 0.745 47 H -0.220 1.220 48 H -0.230 1.230 49 H 0.171 0.829 50 H 0.181 0.819 51 H 0.096 0.904 52 H 0.107 0.893 53 H 0.074 0.926 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.379 4.771 6.103 7.755 hybrid contribution -0.068 0.244 -0.442 0.509 sum -0.447 5.015 5.661 7.576 Atomic orbital electron populations 1.21906 0.95388 1.01700 1.01815 1.21134 0.95684 0.96467 0.97866 1.21892 1.01436 0.95439 1.01801 1.21188 0.95277 0.94630 0.98352 0.90282 1.21586 1.00855 0.95605 0.96947 1.21860 0.94941 0.99828 0.99637 1.21029 0.93861 0.93525 0.87299 0.92190 1.45824 1.66589 1.05281 1.17953 1.20515 0.77239 0.83308 0.88778 1.90749 1.50762 1.67036 1.36350 1.22482 1.01232 0.79234 0.96718 1.22382 0.92854 1.04288 1.03427 1.86185 1.87811 1.17027 1.31580 1.19155 0.96270 0.90269 0.86642 1.20458 1.06679 0.91079 0.99921 1.20774 0.99801 0.98603 0.92492 1.19668 1.04637 0.95398 0.93245 1.24623 0.92018 1.07993 0.93114 1.86430 1.41756 1.68893 1.40176 0.94623 0.75895 0.77519 0.84583 1.21088 0.94265 0.91775 0.99650 1.21627 1.07482 1.02208 0.90693 1.21763 1.01383 0.92159 1.00127 1.21612 0.94975 1.01236 0.97268 0.92390 0.92978 0.92720 0.92057 0.91905 0.93111 0.92361 0.91206 0.93111 0.90200 0.94237 0.74241 0.85478 0.92216 0.86765 0.89710 0.85288 0.86242 0.88334 0.74502 1.21979 1.23008 0.82870 0.81903 0.90429 0.89286 0.92624 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 8.84 71.98 0.64 0.84 16 2 C -0.09 0.17 2.51 -10.80 -0.03 0.14 16 3 C -0.15 0.43 8.84 71.98 0.64 1.07 16 4 C -0.08 0.23 1.78 -10.79 -0.02 0.21 16 5 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 6 C -0.11 -0.01 4.85 30.59 0.15 0.14 16 7 C -0.12 -0.10 5.49 30.60 0.17 0.07 16 8 C 0.15 -0.02 2.45 44.99 0.11 0.09 16 9 H 0.06 0.39 7.58 -2.38 -0.02 0.37 16 10 N -0.70 1.53 4.97 -442.52 -2.20 -0.67 16 11 C 0.52 2.98 7.20 87.66 0.63 3.61 16 12 O -0.57 -9.92 16.16 16.01 0.26 -9.66 16 13 C 0.06 0.08 2.64 29.85 0.08 0.15 16 14 C -0.17 0.74 9.07 71.98 0.65 1.39 16 15 O -0.31 -3.12 9.33 -73.40 -0.69 -3.81 16 16 C 0.12 0.99 6.60 22.51 0.15 1.14 16 17 C -0.16 -1.64 9.99 22.37 0.22 -1.41 16 18 C -0.10 -0.85 8.66 22.26 0.19 -0.66 16 19 C -0.13 -0.70 5.42 -19.85 -0.11 -0.81 16 20 C -0.07 0.03 2.81 71.24 0.20 0.23 16 21 O -0.56 0.54 12.74 -148.98 -1.90 -1.36 16 22 Si 0.77 -0.42 29.78 68.60 2.04 1.63 16 23 C -0.05 -0.13 9.60 22.26 0.21 0.08 16 24 C -0.20 -0.46 8.24 22.37 0.18 -0.27 16 25 C -0.12 0.66 5.39 30.59 0.16 0.82 16 26 C -0.11 0.46 4.85 30.60 0.15 0.61 16 27 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.05 -0.03 6.43 -2.38 -0.02 -0.05 16 30 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.24 6.43 -2.38 -0.02 -0.25 16 32 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 34 H 0.07 0.01 6.43 -2.39 -0.02 -0.01 16 35 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.42 -4.23 8.02 -92.71 -0.74 -4.98 16 39 H 0.13 -0.61 6.31 -2.39 -0.02 -0.63 16 40 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.11 -1.30 7.56 -2.39 -0.02 -1.32 16 42 H 0.08 -0.41 6.90 -2.39 -0.02 -0.43 16 43 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.12 0.95 4.87 -2.91 -0.01 0.94 16 45 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 46 H 0.40 -4.63 8.74 -74.06 -0.65 -5.28 16 47 H -0.29 -1.58 7.11 99.48 0.71 -0.88 16 48 H -0.30 -2.37 7.11 99.48 0.71 -1.66 16 49 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 50 H 0.16 -0.78 5.43 -2.91 -0.02 -0.80 16 51 H 0.08 -0.50 8.14 -2.39 -0.02 -0.51 16 52 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 53 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 54 H 0.08 -0.48 6.43 -2.39 -0.02 -0.50 16 Total: 0.00 -25.10 413.51 1.45 -23.65 By element: Atomic # 1 Polarization: -16.78 SS G_CDS: -0.45 Total: -17.23 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.38 Total: 7.45 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -2.20 Total: -0.67 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -2.32 Total: -14.83 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.04 Total: 1.63 kcal Total: -25.10 1.45 -23.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_10157680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.735 kcal (2) G-P(sol) polarization free energy of solvation -25.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds