Wall clock time and date at job start Sun Mar 7 2021 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 5 5 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 6 6 C 1.53006 * 109.47127 * 59.99878 * 4 2 1 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 4 9 9 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 11 11 C 1.34782 * 120.00074 * 155.00031 * 10 8 7 12 12 O 1.21689 * 119.99621 * 359.97438 * 11 10 8 13 13 C 1.46684 * 119.99915 * 180.02562 * 11 10 8 14 14 C 1.37873 * 126.22750 * 179.97438 * 13 11 10 15 15 C 1.39833 * 107.07969 * 179.97438 * 14 13 11 16 16 C 1.50698 * 126.06947 * 179.97438 * 15 14 13 17 17 O 1.42909 * 109.46948 * 64.99693 * 16 15 14 18 18 Si 1.86295 * 109.47677 * 184.99950 * 16 15 14 19 19 C 1.35457 * 107.86707 * 359.97438 * 15 14 13 20 20 N 1.35529 * 108.87154 * 359.76806 * 19 15 14 21 21 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 22 22 C 1.52997 * 109.47232 * 179.97438 * 4 2 1 23 23 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 24 24 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 25 25 H 1.09002 * 109.46668 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46812 * 240.00389 * 2 1 3 27 27 H 1.09000 * 109.47054 * 300.00209 * 3 2 1 28 28 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 29 29 H 1.08996 * 109.47452 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46505 * 59.99871 * 6 4 2 31 31 H 1.08996 * 109.46884 * 300.00752 * 6 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 7 6 4 34 34 H 0.97002 * 120.00427 * 334.99530 * 10 8 7 35 35 H 1.07992 * 126.45936 * 359.97438 * 14 13 11 36 36 H 1.08998 * 109.46967 * 305.00681 * 16 15 14 37 37 H 0.96706 * 113.99669 * 60.00378 * 17 16 15 38 38 H 1.48495 * 109.99950 * 58.67901 * 18 16 15 39 39 H 1.48499 * 110.00301 * 180.02562 * 18 16 15 40 40 H 1.08006 * 125.56095 * 179.97438 * 19 15 14 41 41 H 0.96995 * 125.68085 * 180.26290 * 20 19 15 42 42 H 1.08992 * 109.47554 * 59.99639 * 21 8 7 43 43 H 1.09004 * 109.47108 * 179.97438 * 21 8 7 44 44 H 1.09002 * 109.47045 * 59.99942 * 22 4 2 45 45 H 1.09001 * 109.47375 * 299.99867 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0407 -2.8853 2.4980 8 6 3.5707 -2.8851 2.4973 9 1 3.9337 -3.3988 1.6071 10 7 4.0596 -3.5765 3.6928 11 6 5.2816 -4.1450 3.6902 12 8 5.9787 -4.0844 2.6946 13 6 5.7708 -4.8377 4.8870 14 6 6.9927 -5.4614 5.0253 15 6 7.0417 -5.9862 6.3205 16 6 8.1887 -6.7556 6.9232 17 8 9.3299 -5.9023 7.0316 18 14 7.7062 -7.3652 8.6162 19 6 5.8751 -5.6802 6.9373 20 7 5.0965 -4.9777 6.0788 21 6 4.0806 -1.4427 2.4974 22 6 3.5701 -0.7218 1.2488 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.8934 -2.6775 0.3591 31 1 0.4402 -2.1638 1.2491 32 1 1.6778 -3.9131 2.4978 33 1 1.6777 -2.3716 3.3882 34 1 3.5038 -3.6251 4.4864 35 1 7.7660 -5.5314 4.2748 36 1 8.4303 -7.6062 6.2859 37 1 9.1869 -5.1227 7.5856 38 1 6.5014 -8.2281 8.5210 39 1 8.8292 -8.1252 9.2216 40 1 5.6103 -5.9491 7.9493 41 1 4.2106 -4.6329 6.2714 42 1 3.7177 -0.9290 3.3875 43 1 5.1707 -1.4426 2.4974 44 1 3.9338 0.3058 1.2486 45 1 3.9331 -1.2359 0.3588 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_10543058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:47 Heat of formation + Delta-G solvation = -48.331069 kcal Electronic energy + Delta-G solvation = -23675.776446 eV Core-core repulsion = 20273.213215 eV Total energy + Delta-G solvation = -3402.563232 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49590 -40.92372 -39.58412 -37.63716 -36.75202 -34.28449 -32.52707 -31.94365 -30.93817 -29.35508 -28.01953 -26.49970 -24.73518 -23.50622 -23.12310 -21.44302 -21.13604 -20.79270 -20.54627 -19.84779 -17.67928 -17.32817 -17.01181 -16.53207 -16.17611 -15.88135 -15.60305 -15.29735 -15.20050 -14.91422 -14.76784 -14.55039 -14.40685 -14.31071 -14.16336 -13.93277 -13.49468 -13.40544 -13.08362 -12.81512 -12.69032 -12.32795 -12.26696 -12.12105 -12.06206 -11.97388 -11.64507 -11.45232 -11.33545 -11.03664 -10.93662 -10.33384 -10.22861 -9.96290 -9.29365 -4.93240 0.34889 1.41833 1.52092 1.74180 1.92215 2.09672 2.14235 2.24411 3.59814 3.65907 3.68780 3.72609 3.84776 3.97838 4.00872 4.09724 4.17128 4.26847 4.30432 4.35840 4.36521 4.48134 4.51687 4.63070 4.65171 4.66485 4.77673 4.82072 4.87180 4.99078 4.99961 5.01804 5.02597 5.07001 5.12597 5.17149 5.18246 5.27212 5.32393 5.35992 5.44571 5.53911 5.58018 5.61824 5.72146 6.35308 6.52607 6.90699 7.05448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.147 3.853 9 H 0.062 0.938 10 N -0.711 5.711 11 C 0.587 3.413 12 O -0.577 6.577 13 C -0.070 4.070 14 C -0.107 4.107 15 C -0.229 4.229 16 C -0.054 4.054 17 O -0.566 6.566 18 Si 0.805 3.195 19 C 0.062 3.938 20 N -0.514 5.514 21 C -0.123 4.123 22 C -0.112 4.112 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.393 0.607 38 H -0.274 1.274 39 H -0.310 1.310 40 H 0.219 0.781 41 H 0.438 0.562 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 2.930 6.904 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.155 4.155 8 C 0.043 3.957 9 H 0.080 0.920 10 N -0.362 5.362 11 C 0.376 3.624 12 O -0.457 6.457 13 C -0.183 4.183 14 C -0.135 4.135 15 C -0.235 4.235 16 C -0.163 4.163 17 O -0.374 6.374 18 Si 0.710 3.290 19 C -0.076 4.076 20 N -0.111 5.111 21 C -0.161 4.161 22 C -0.150 4.150 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.243 0.757 38 H -0.200 1.200 39 H -0.239 1.239 40 H 0.235 0.765 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.755 1.950 6.272 10.163 hybrid contribution 0.102 -0.110 -0.833 0.846 sum -7.653 1.840 5.439 9.568 Atomic orbital electron populations 1.21894 0.94773 1.02126 1.01802 1.21130 0.96071 0.96053 0.97858 1.21907 1.01081 0.96026 1.01808 1.21187 0.94134 0.95771 0.98356 0.90330 1.21605 1.01456 0.94778 0.97209 1.21763 0.91604 1.01917 1.00176 1.21030 0.95245 0.92172 0.87268 0.92001 1.45815 1.16656 1.56020 1.17663 1.17304 0.81630 0.77608 0.85904 1.90845 1.57836 1.61902 1.35122 1.20111 0.96511 1.13099 0.88556 1.21222 0.95425 0.99301 0.97506 1.19956 0.98472 1.09574 0.95498 1.24770 0.85644 0.94822 1.11064 1.86461 1.35852 1.40268 1.74831 0.93915 0.76646 0.83367 0.75064 1.22408 0.90660 0.97207 0.97318 1.41850 1.17360 1.42403 1.09527 1.21834 0.99659 0.95068 0.99553 1.21577 0.95938 1.00481 0.96969 0.92369 0.93101 0.91948 0.92010 0.92976 0.92408 0.92647 0.92562 0.89850 0.90706 0.89407 0.75226 0.86153 0.89287 0.75693 1.20042 1.23890 0.76467 0.72082 0.90413 0.94059 0.91136 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 8.84 71.98 0.64 1.10 16 2 C -0.09 0.20 2.51 -10.79 -0.03 0.17 16 3 C -0.15 0.25 8.84 71.98 0.64 0.88 16 4 C -0.08 0.25 1.78 -10.79 -0.02 0.23 16 5 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 6 C -0.11 0.47 4.85 30.60 0.15 0.62 16 7 C -0.12 0.64 5.39 30.59 0.16 0.81 16 8 C 0.15 0.01 2.45 44.99 0.11 0.12 16 9 H 0.06 0.40 7.57 -2.39 -0.02 0.38 16 10 N -0.71 0.96 5.07 -446.50 -2.27 -1.31 16 11 C 0.59 4.09 7.75 86.45 0.67 4.76 16 12 O -0.58 -9.92 16.54 -4.31 -0.07 -9.99 16 13 C -0.07 -0.24 7.06 40.35 0.28 0.05 16 14 C -0.11 -0.79 10.59 22.57 0.24 -0.56 16 15 C -0.23 -0.22 5.43 -20.12 -0.11 -0.33 16 16 C -0.05 -0.06 3.02 71.24 0.22 0.16 16 17 O -0.57 -1.89 12.88 -148.98 -1.92 -3.81 16 18 Si 0.81 -3.59 30.60 68.60 2.10 -1.49 16 19 C 0.06 -0.41 10.45 83.48 0.87 0.47 16 20 N -0.51 3.33 5.99 -183.61 -1.10 2.23 16 21 C -0.12 -0.09 5.50 30.58 0.17 0.08 16 22 C -0.11 0.03 4.85 30.58 0.15 0.18 16 23 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.06 -0.25 6.43 -2.39 -0.02 -0.26 16 26 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 -0.13 8.14 -2.39 -0.02 -0.14 16 29 H 0.05 -0.06 6.43 -2.39 -0.02 -0.07 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.08 -0.49 6.43 -2.39 -0.02 -0.50 16 32 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.41 -3.79 7.73 -92.71 -0.72 -4.50 16 35 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.09 0.40 7.96 -2.39 -0.02 0.38 16 37 H 0.39 -2.22 8.70 -74.05 -0.64 -2.86 16 38 H -0.27 0.42 7.11 99.48 0.71 1.13 16 39 H -0.31 -1.45 7.11 99.48 0.71 -0.75 16 40 H 0.22 -3.33 6.21 -2.91 -0.02 -3.34 16 41 H 0.44 -6.36 8.19 -92.71 -0.76 -7.12 16 42 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.07 -0.02 6.43 -2.39 -0.02 -0.04 16 45 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -23.73 352.45 -0.20 -23.93 By element: Atomic # 1 Polarization: -17.22 SS G_CDS: -1.08 Total: -18.30 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.14 Total: 8.74 kcal Atomic # 7 Polarization: 4.28 SS G_CDS: -3.37 Total: 0.92 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.99 Total: -13.80 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.10 Total: -1.49 kcal Total: -23.73 -0.20 -23.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_10543058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.403 kcal (2) G-P(sol) polarization free energy of solvation -23.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds