Wall clock time and date at job start Sun Mar 7 2021 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47327 * 119.99800 * 2 1 3 5 5 H 1.09003 * 109.47334 * 300.00549 * 4 2 1 6 6 C 1.53002 * 109.46920 * 60.00154 * 4 2 1 7 7 C 1.52995 * 109.47266 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47278 * 300.00028 * 7 6 4 9 9 H 1.08997 * 109.46925 * 300.00057 * 8 7 6 10 10 N 1.46497 * 109.47321 * 179.97438 * 8 7 6 11 11 C 1.34776 * 120.00202 * 84.99853 * 10 8 7 12 12 O 1.21703 * 119.99883 * 5.10211 * 11 10 8 13 13 C 1.46670 * 120.00508 * 185.10110 * 11 10 8 14 14 C 1.37880 * 126.23328 * 355.01519 * 13 11 10 15 15 C 1.39833 * 107.08704 * 179.97438 * 14 13 11 16 16 C 1.50696 * 126.06706 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47314 * 65.02491 * 16 15 14 18 18 Si 1.86296 * 109.47098 * 185.02539 * 16 15 14 19 19 C 1.35457 * 107.86305 * 0.02562 * 15 14 13 20 20 N 1.35528 * 108.87408 * 359.97438 * 19 15 14 21 21 C 1.46505 * 125.67819 * 180.02562 * 20 19 15 22 22 C 1.53002 * 109.46995 * 59.99806 * 8 7 6 23 23 C 1.52995 * 109.47266 * 300.00201 * 22 8 7 24 24 H 1.09000 * 109.47093 * 60.00009 * 1 2 3 25 25 H 1.09001 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46925 * 299.99750 * 1 2 3 27 27 H 1.08997 * 109.46925 * 240.00250 * 2 1 3 28 28 H 1.09001 * 109.47394 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46990 * 300.00442 * 3 2 1 30 30 H 1.09003 * 109.46795 * 59.99985 * 3 2 1 31 31 H 1.09001 * 109.47394 * 299.99946 * 6 4 2 32 32 H 1.08997 * 109.47080 * 59.99705 * 6 4 2 33 33 H 1.09001 * 109.47240 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47189 * 59.99923 * 7 6 4 35 35 H 0.96999 * 120.00193 * 265.00324 * 10 8 7 36 36 H 1.07999 * 126.45072 * 359.97438 * 14 13 11 37 37 H 1.09002 * 109.46953 * 305.02396 * 16 15 14 38 38 H 0.96700 * 113.99959 * 180.02562 * 17 16 15 39 39 H 1.48498 * 110.00400 * 300.00102 * 18 16 15 40 40 H 1.48507 * 110.00150 * 61.31729 * 18 16 15 41 41 H 1.08007 * 125.55925 * 179.73910 * 19 15 14 42 42 H 1.08996 * 109.46988 * 95.53218 * 21 20 19 43 43 H 1.08997 * 109.46634 * 215.52881 * 21 20 19 44 44 H 1.09000 * 109.46974 * 335.52756 * 21 20 19 45 45 H 1.09003 * 109.46795 * 59.99985 * 22 8 7 46 46 H 1.08991 * 109.47388 * 179.97438 * 22 8 7 47 47 H 1.09001 * 109.47240 * 179.97438 * 23 22 8 48 48 H 1.08997 * 109.47189 * 300.00077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 2.0406 -2.8851 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9336 -3.3988 1.6072 10 7 4.0595 -3.5754 3.6936 11 6 4.1882 -4.9170 3.6922 12 8 3.9877 -5.5464 2.6700 13 6 4.5699 -5.6185 4.9224 14 6 4.9195 -5.0318 6.1201 15 6 5.2060 -6.0663 7.0162 16 6 5.6337 -5.9034 8.4520 17 8 4.5726 -5.3065 9.2003 18 14 6.0391 -7.5728 9.1725 19 6 5.0309 -7.2409 6.3646 20 7 4.6442 -6.9826 5.0916 21 6 4.3533 -7.9878 4.0663 22 6 4.0806 -1.4426 2.4975 23 6 3.5701 -0.7212 1.2486 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.4401 -2.1638 1.2492 32 1 1.8934 -2.6775 0.3592 33 1 1.6777 -3.9129 2.4978 34 1 1.6777 -2.3715 3.3883 35 1 4.2905 -3.0669 4.4867 36 1 4.9638 -3.9727 6.3270 37 1 6.5153 -5.2639 8.4982 38 1 4.7786 -5.1711 10.1354 39 1 4.8454 -8.4542 9.1154 40 1 7.1626 -8.1904 8.4228 41 1 5.1793 -8.2228 6.7891 42 1 3.2810 -8.1817 4.0415 43 1 4.6785 -7.6191 3.0935 44 1 4.8841 -8.9104 4.3012 45 1 3.7176 -0.9289 3.3877 46 1 5.1705 -1.4425 2.4975 47 1 3.9330 0.3066 1.2488 48 1 3.9330 -1.2348 0.3584 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_10803934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:51 Heat of formation + Delta-G solvation = -38.056742 kcal Electronic energy + Delta-G solvation = -25915.398652 eV Core-core repulsion = 22357.743330 eV Total energy + Delta-G solvation = -3557.655322 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70401 -40.95211 -39.58486 -37.61981 -36.74656 -34.58785 -33.83941 -31.94749 -31.34198 -29.28509 -28.40639 -28.01952 -25.76904 -24.65368 -23.50476 -23.04209 -21.40889 -21.14783 -20.64974 -20.36185 -18.75111 -18.22895 -17.44268 -17.27141 -16.82820 -16.30200 -15.85244 -15.45782 -15.38038 -15.16510 -15.13180 -14.99887 -14.62469 -14.50705 -14.39200 -14.20469 -14.15584 -13.74316 -13.41057 -13.35616 -13.24751 -13.08463 -12.80322 -12.68556 -12.47048 -12.32630 -12.11899 -12.06152 -11.96736 -11.64518 -11.36412 -11.32325 -11.01622 -10.94112 -10.22123 -10.20160 -9.81041 -9.42577 -4.92034 0.24697 1.29490 1.40822 1.46692 1.72604 2.03980 2.15507 2.22108 3.50288 3.58603 3.63897 3.68433 3.69715 3.78557 3.91717 4.00069 4.02403 4.09698 4.17942 4.26880 4.29748 4.31057 4.35949 4.46865 4.51421 4.52842 4.58060 4.62986 4.65940 4.69782 4.78010 4.82103 4.97774 5.00187 5.01270 5.05024 5.06523 5.12682 5.16723 5.18414 5.26699 5.32965 5.35883 5.43221 5.53252 5.54661 5.61946 5.74482 5.94765 6.38411 7.02626 7.04244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.110 4.110 7 C -0.123 4.123 8 C 0.150 3.850 9 H 0.067 0.933 10 N -0.702 5.702 11 C 0.589 3.411 12 O -0.582 6.582 13 C -0.074 4.074 14 C -0.108 4.108 15 C -0.181 4.181 16 C -0.041 4.041 17 O -0.567 6.567 18 Si 0.776 3.224 19 C 0.008 3.992 20 N -0.414 5.414 21 C 0.064 3.936 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.401 0.599 39 H -0.299 1.299 40 H -0.290 1.290 41 H 0.174 0.826 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 3.286 4.792 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.094 0.906 6 C -0.148 4.148 7 C -0.162 4.162 8 C 0.046 3.954 9 H 0.086 0.914 10 N -0.352 5.352 11 C 0.377 3.623 12 O -0.464 6.464 13 C -0.187 4.187 14 C -0.134 4.134 15 C -0.187 4.187 16 C -0.152 4.152 17 O -0.376 6.376 18 Si 0.682 3.318 19 C -0.128 4.128 20 N -0.086 5.086 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.186 0.814 37 H 0.108 0.892 38 H 0.252 0.748 39 H -0.226 1.226 40 H -0.218 1.218 41 H 0.191 0.809 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.867 1.740 3.033 3.965 hybrid contribution -0.166 -0.017 -0.388 0.422 sum 1.701 1.723 2.646 3.586 Atomic orbital electron populations 1.21910 0.95392 1.01747 1.01785 1.21122 0.95663 0.96409 0.97811 1.21898 1.01449 0.95508 1.01778 1.21199 0.95259 0.94774 0.98369 0.90566 1.21573 1.00847 0.95494 0.96849 1.21857 0.94829 0.99872 0.99600 1.21050 0.93831 0.93437 0.87111 0.91447 1.45661 1.66347 1.05236 1.17979 1.17107 0.76295 0.83008 0.85864 1.90776 1.53558 1.67370 1.34720 1.20233 1.17804 0.83729 0.96915 1.21489 1.01685 1.00176 0.90044 1.19185 1.10925 0.92445 0.96194 1.24112 0.92566 1.09687 0.88828 1.86453 1.40374 1.84191 1.26616 0.94301 0.76351 0.73380 0.87790 1.22004 1.06018 1.00031 0.84770 1.43984 1.48299 1.05805 1.10519 1.22393 1.03317 0.90933 0.90949 1.21771 1.01299 0.92381 1.00181 1.21596 0.94979 1.01179 0.97111 0.92888 0.92625 0.92545 0.91803 0.91904 0.93016 0.92495 0.91152 0.92665 0.94091 0.90787 0.74787 0.81401 0.89197 0.74850 1.22635 1.21769 0.80917 0.90132 0.89181 0.87297 0.89752 0.90635 0.89855 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.15 8.84 71.98 0.64 0.78 16 2 C -0.09 0.14 2.51 -10.79 -0.03 0.11 16 3 C -0.15 0.35 8.84 71.98 0.64 0.99 16 4 C -0.08 0.16 1.78 -10.79 -0.02 0.14 16 5 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 6 C -0.11 -0.06 4.85 30.59 0.15 0.09 16 7 C -0.12 -0.29 5.49 30.59 0.17 -0.12 16 8 C 0.15 0.28 2.50 44.99 0.11 0.40 16 9 H 0.07 0.47 7.51 -2.39 -0.02 0.45 16 10 N -0.70 -1.72 5.06 -446.50 -2.26 -3.98 16 11 C 0.59 5.42 7.74 86.44 0.67 6.09 16 12 O -0.58 -9.01 14.40 -4.36 -0.06 -9.07 16 13 C -0.07 -0.61 6.89 40.35 0.28 -0.33 16 14 C -0.11 -0.55 10.29 22.57 0.23 -0.31 16 15 C -0.18 -1.01 5.46 -20.12 -0.11 -1.12 16 16 C -0.04 0.02 3.01 71.23 0.21 0.24 16 17 O -0.57 0.16 12.86 -148.98 -1.92 -1.76 16 18 Si 0.78 -1.99 30.60 68.60 2.10 0.11 16 19 C 0.01 0.05 9.93 83.48 0.83 0.88 16 20 N -0.41 -3.26 3.16 -534.30 -1.69 -4.95 16 21 C 0.06 0.26 10.49 127.77 1.34 1.60 16 22 C -0.12 0.39 5.39 30.59 0.16 0.55 16 23 C -0.11 0.33 4.85 30.59 0.15 0.48 16 24 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.05 -0.03 6.43 -2.39 -0.02 -0.04 16 26 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 -0.20 6.43 -2.39 -0.02 -0.22 16 29 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.07 0.03 6.43 -2.39 -0.02 0.02 16 32 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.41 -1.19 7.50 -92.71 -0.70 -1.88 16 36 H 0.17 -0.10 7.45 -2.91 -0.02 -0.13 16 37 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 38 H 0.40 -4.39 8.74 -74.06 -0.65 -5.04 16 39 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 40 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 41 H 0.17 0.55 6.21 -2.91 -0.02 0.53 16 42 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.09 0.64 6.54 -2.39 -0.02 0.62 16 44 H 0.11 -0.18 8.12 -2.39 -0.02 -0.20 16 45 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.08 -0.38 6.43 -2.39 -0.02 -0.40 16 48 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -18.82 370.74 1.24 -17.59 By element: Atomic # 1 Polarization: -8.05 SS G_CDS: -0.35 Total: -8.40 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.42 Total: 10.46 kcal Atomic # 7 Polarization: -4.98 SS G_CDS: -3.95 Total: -8.93 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.98 Total: -10.83 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.10 Total: 0.11 kcal Total: -18.82 1.24 -17.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_10803934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.471 kcal (2) G-P(sol) polarization free energy of solvation -18.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds