Wall clock time and date at job start Sun Mar 7 2021 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46895 * 120.00012 * 2 1 3 5 5 H 1.09001 * 109.47239 * 299.99444 * 4 2 1 6 6 C 1.52995 * 109.47648 * 60.00125 * 4 2 1 7 7 C 1.52994 * 109.47434 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47007 * 299.99806 * 7 6 4 9 9 H 1.09001 * 109.46727 * 299.99958 * 8 7 6 10 10 N 1.46503 * 109.46870 * 179.97438 * 8 7 6 11 11 C 1.34776 * 120.00006 * 85.00209 * 10 8 7 12 12 O 1.21696 * 119.99780 * 354.95907 * 11 10 8 13 13 C 1.46670 * 120.00318 * 174.95855 * 11 10 8 14 14 C 1.37876 * 126.22990 * 4.97984 * 13 11 10 15 15 C 1.39838 * 107.08220 * 179.84750 * 14 13 11 16 16 C 1.35453 * 107.86935 * 0.41766 * 15 14 13 17 17 C 1.50699 * 125.56693 * 179.77551 * 16 15 14 18 18 O 1.42900 * 109.46757 * 149.95996 * 17 16 15 19 19 Si 1.86301 * 109.47122 * 29.95671 * 17 16 15 20 20 N 1.35535 * 108.86968 * 359.74033 * 16 15 14 21 21 C 1.46502 * 125.67925 * 180.02562 * 20 16 15 22 22 C 1.53000 * 109.46806 * 60.00187 * 8 7 6 23 23 C 1.52998 * 109.46930 * 299.99478 * 22 8 7 24 24 H 1.08995 * 109.47398 * 300.00225 * 1 2 3 25 25 H 1.09002 * 109.47265 * 60.00318 * 1 2 3 26 26 H 1.09004 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47217 * 239.99769 * 2 1 3 28 28 H 1.09000 * 109.47277 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46769 * 299.99985 * 3 2 1 30 30 H 1.08995 * 109.47146 * 59.99621 * 3 2 1 31 31 H 1.09000 * 109.46530 * 300.00313 * 6 4 2 32 32 H 1.09004 * 109.46657 * 59.99569 * 6 4 2 33 33 H 1.08995 * 109.47007 * 60.00008 * 7 6 4 34 34 H 1.09004 * 109.46990 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00282 * 265.00484 * 10 8 7 36 36 H 1.07995 * 126.46100 * 359.96765 * 14 13 11 37 37 H 1.08006 * 126.06329 * 180.13770 * 15 14 13 38 38 H 1.08997 * 109.47093 * 269.95971 * 17 16 15 39 39 H 0.96709 * 113.99169 * 179.97438 * 18 17 16 40 40 H 1.48491 * 109.99923 * 298.68422 * 19 17 16 41 41 H 1.48498 * 109.99580 * 60.00019 * 19 17 16 42 42 H 1.09002 * 109.47094 * 275.76075 * 21 20 16 43 43 H 1.08997 * 109.46724 * 35.76216 * 21 20 16 44 44 H 1.08996 * 109.46681 * 155.76170 * 21 20 16 45 45 H 1.09000 * 109.46470 * 179.97438 * 22 8 7 46 46 H 1.08995 * 109.46870 * 60.00003 * 22 8 7 47 47 H 1.08995 * 109.47319 * 300.00252 * 23 22 8 48 48 H 1.09004 * 109.46736 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 2.0404 -2.8851 2.4983 8 6 3.5705 -2.8851 2.4976 9 1 3.9334 -3.3989 1.6074 10 7 4.0593 -3.5754 3.6938 11 6 4.1880 -4.9169 3.6924 12 8 3.8126 -5.5632 2.7320 13 6 4.7805 -5.5981 4.8483 14 6 5.1585 -5.0085 6.0360 15 6 5.6688 -6.0218 6.8535 16 6 5.6039 -7.1852 6.1629 17 6 6.0553 -8.5311 6.6686 18 8 5.2629 -9.5565 6.0663 19 14 5.8550 -8.5981 8.5196 20 7 5.0661 -6.9414 4.9429 21 6 4.8277 -7.9411 3.8989 22 6 4.0804 -1.4426 2.4976 23 6 3.5699 -0.7213 1.2486 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.4400 -2.1637 1.2493 32 1 1.8933 -2.6775 0.3593 33 1 1.6774 -2.3714 3.3884 34 1 1.6767 -3.9127 2.4985 35 1 4.2902 -3.0668 4.4869 36 1 5.0743 -3.9618 6.2882 37 1 6.0514 -5.8979 7.8559 38 1 7.1034 -8.6833 6.4109 39 1 5.4990 -10.4515 6.3464 40 1 6.6987 -7.5572 9.1597 41 1 4.4303 -8.3920 8.8840 42 1 5.7415 -8.0908 3.3238 43 1 4.5296 -8.8831 4.3592 44 1 4.0347 -7.5932 3.2370 45 1 5.1704 -1.4427 2.4976 46 1 3.7174 -0.9290 3.3878 47 1 3.9329 -1.2350 0.3585 48 1 3.9336 0.3063 1.2484 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_10803936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:55 Heat of formation + Delta-G solvation = -38.390988 kcal Electronic energy + Delta-G solvation = -26010.683703 eV Core-core repulsion = 22453.013887 eV Total energy + Delta-G solvation = -3557.669816 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70793 -40.97462 -39.60326 -37.71477 -36.77180 -34.53857 -33.70609 -31.95407 -31.71144 -29.52628 -28.02845 -27.58887 -26.71612 -24.10353 -23.50736 -22.96713 -21.49425 -21.34661 -20.65477 -20.31077 -18.84510 -18.39361 -17.42917 -17.06198 -16.86675 -16.22006 -15.96848 -15.58680 -15.45898 -15.17320 -15.14244 -14.96878 -14.64381 -14.52951 -14.45968 -14.19046 -13.94855 -13.70968 -13.41811 -13.26963 -13.17647 -13.09221 -12.79359 -12.69913 -12.67621 -12.33503 -12.13253 -12.07204 -11.93584 -11.65302 -11.35525 -11.32367 -11.03513 -10.93018 -10.59673 -10.20343 -9.91775 -9.20985 -4.93980 0.24192 1.13302 1.43069 1.66243 1.72791 2.08607 2.19170 2.26634 3.16425 3.52848 3.61352 3.65345 3.67968 3.78712 3.89347 3.99627 4.08210 4.19348 4.25128 4.27276 4.29579 4.34954 4.38140 4.46360 4.47748 4.50423 4.61954 4.64910 4.75053 4.78342 4.81226 4.85810 4.93258 4.98732 5.00023 5.01560 5.06172 5.11545 5.15695 5.17431 5.26193 5.32951 5.34929 5.43640 5.53005 5.58447 5.61143 5.83927 6.00772 6.39230 6.81310 7.03487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.076 0.924 6 C -0.110 4.110 7 C -0.123 4.123 8 C 0.151 3.849 9 H 0.065 0.935 10 N -0.702 5.702 11 C 0.587 3.413 12 O -0.583 6.583 13 C -0.082 4.082 14 C -0.126 4.126 15 C -0.232 4.232 16 C 0.047 3.953 17 C -0.064 4.064 18 O -0.566 6.566 19 Si 0.822 3.178 20 N -0.400 5.400 21 C 0.061 3.939 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.415 0.585 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.102 0.898 39 H 0.409 0.591 40 H -0.279 1.279 41 H -0.310 1.310 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 -0.028 3.642 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.094 0.906 6 C -0.148 4.148 7 C -0.162 4.162 8 C 0.047 3.953 9 H 0.083 0.917 10 N -0.352 5.352 11 C 0.376 3.624 12 O -0.465 6.465 13 C -0.196 4.196 14 C -0.152 4.152 15 C -0.256 4.256 16 C -0.072 4.072 17 C -0.172 4.172 18 O -0.378 6.378 19 Si 0.725 3.275 20 N -0.073 5.073 21 C -0.080 4.080 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.174 0.826 38 H 0.120 0.880 39 H 0.263 0.737 40 H -0.206 1.206 41 H -0.239 1.239 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.498 0.203 3.038 3.938 hybrid contribution -0.084 0.390 -0.424 0.583 sum 2.414 0.593 2.614 3.607 Atomic orbital electron populations 1.21909 0.95396 1.01741 1.01790 1.21124 0.95665 0.96416 0.97803 1.21896 1.01451 0.95488 1.01784 1.21198 0.95261 0.94749 0.98373 0.90582 1.21573 1.00831 0.95493 0.96868 1.21850 0.94912 0.99911 0.99525 1.21043 0.93912 0.93406 0.86890 0.91691 1.45654 1.66527 1.05180 1.17866 1.17145 0.77442 0.82996 0.84795 1.90755 1.52236 1.66075 1.37397 1.20284 1.15511 0.84916 0.98868 1.21632 1.01494 1.00574 0.91541 1.20818 1.11265 0.91919 1.01581 1.20813 1.03654 0.96853 0.85856 1.24830 0.97615 0.83326 1.11440 1.86313 1.60879 1.19519 1.71057 0.94368 0.76950 0.86612 0.69555 1.43985 1.43950 1.06651 1.12697 1.22540 1.03262 0.92158 0.89997 1.21774 1.01306 0.92318 1.00201 1.21596 0.94977 1.01189 0.97104 0.92562 0.92852 0.92648 0.91793 0.91897 0.92985 0.92513 0.91198 0.92707 0.90852 0.94059 0.74762 0.80707 0.82631 0.87991 0.73732 1.20557 1.23873 0.90663 0.86465 0.89790 0.90602 0.89728 0.92271 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 8.84 71.98 0.64 0.74 16 2 C -0.09 0.11 2.51 -10.79 -0.03 0.08 16 3 C -0.15 0.32 8.84 71.98 0.64 0.96 16 4 C -0.08 0.13 1.78 -10.79 -0.02 0.12 16 5 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 6 C -0.11 -0.12 4.85 30.59 0.15 0.02 16 7 C -0.12 -0.38 5.49 30.59 0.17 -0.21 16 8 C 0.15 0.37 2.42 44.99 0.11 0.48 16 9 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 10 N -0.70 -2.09 5.06 -446.49 -2.26 -4.35 16 11 C 0.59 6.10 7.73 86.44 0.67 6.76 16 12 O -0.58 -9.95 14.21 -4.34 -0.06 -10.01 16 13 C -0.08 -0.79 6.89 40.35 0.28 -0.51 16 14 C -0.13 -0.62 10.36 22.57 0.23 -0.39 16 15 C -0.23 -1.34 9.37 22.01 0.21 -1.13 16 16 C 0.05 0.31 6.18 41.34 0.26 0.57 16 17 C -0.06 0.08 2.98 71.24 0.21 0.30 16 18 O -0.57 1.35 9.81 -148.98 -1.46 -0.12 16 19 Si 0.82 -3.03 31.22 68.60 2.14 -0.89 16 20 N -0.40 -3.96 3.16 -519.71 -1.64 -5.60 16 21 C 0.06 0.48 10.32 127.77 1.32 1.80 16 22 C -0.12 0.36 5.39 30.59 0.16 0.52 16 23 C -0.11 0.30 4.85 30.59 0.15 0.45 16 24 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.05 -0.01 6.43 -2.39 -0.02 -0.02 16 27 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.06 -0.19 6.43 -2.39 -0.02 -0.21 16 29 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.07 0.08 6.43 -2.39 -0.02 0.06 16 32 H 0.05 0.17 8.14 -2.38 -0.02 0.16 16 33 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.04 0.37 8.10 -2.39 -0.02 0.35 16 35 H 0.42 -1.17 7.50 -92.71 -0.70 -1.87 16 36 H 0.18 -0.42 7.45 -2.91 -0.02 -0.45 16 37 H 0.16 0.40 6.69 -2.91 -0.02 0.38 16 38 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 39 H 0.41 -5.50 8.74 -74.05 -0.65 -6.15 16 40 H -0.28 -0.11 6.87 99.48 0.68 0.57 16 41 H -0.31 -1.86 7.11 99.48 0.71 -1.16 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.12 0.64 5.48 -2.39 -0.01 0.63 16 44 H 0.08 1.00 5.92 -2.39 -0.01 0.99 16 45 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 46 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.08 -0.37 6.43 -2.39 -0.02 -0.38 16 Total: 0.00 -19.98 365.14 1.48 -18.50 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -0.37 Total: -8.08 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.14 Total: 10.55 kcal Atomic # 7 Polarization: -6.05 SS G_CDS: -3.90 Total: -9.95 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.52 Total: -10.13 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.14 Total: -0.89 kcal Total: -19.98 1.48 -18.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_10803936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.892 kcal (2) G-P(sol) polarization free energy of solvation -19.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds