Wall clock time and date at job start Sun Mar 7 2021 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 4 2 1 7 7 C 1.53000 * 109.47233 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46886 * 299.99330 * 7 6 4 9 9 H 1.08992 * 109.47514 * 300.00434 * 8 7 6 10 10 N 1.46500 * 109.47299 * 180.02562 * 8 7 6 11 11 C 1.34777 * 120.00270 * 155.00124 * 10 8 7 12 12 O 1.21721 * 119.99574 * 0.02562 * 11 10 8 13 13 C 1.46570 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.40854 * 126.57588 * 179.71504 * 13 11 10 15 15 C 1.40098 * 132.86236 * 0.69302 * 14 13 11 16 16 C 1.36455 * 119.24937 * 179.64625 * 15 14 13 17 17 C 1.50693 * 120.29201 * 179.77656 * 16 15 14 18 18 O 1.42900 * 109.47037 * 239.97502 * 17 16 15 19 19 Si 1.86304 * 109.47383 * 119.97558 * 17 16 15 20 20 C 1.40154 * 119.41050 * 359.74722 * 16 15 14 21 21 C 1.35192 * 120.31852 * 359.97438 * 20 16 15 22 22 N 1.36233 * 120.70666 * 0.02562 * 21 20 16 23 23 N 1.40020 * 132.00949 * 179.97438 * 22 21 20 24 24 C 1.30747 * 109.60436 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.46963 * 60.00501 * 8 7 6 26 26 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 1.09000 * 109.46986 * 300.00235 * 6 4 2 35 35 H 1.09002 * 109.47596 * 60.00070 * 6 4 2 36 36 H 1.08992 * 109.47399 * 59.99834 * 7 6 4 37 37 H 1.09001 * 109.47194 * 180.02562 * 7 6 4 38 38 H 0.97006 * 119.99630 * 335.00962 * 10 8 7 39 39 H 1.07992 * 120.37444 * 359.39547 * 15 14 13 40 40 H 1.09001 * 109.47222 * 359.97335 * 17 16 15 41 41 H 0.96700 * 113.99908 * 299.99806 * 18 17 16 42 42 H 1.48492 * 109.99981 * 58.67648 * 19 17 16 43 43 H 1.48497 * 109.99928 * 179.97438 * 19 17 16 44 44 H 1.07998 * 119.84226 * 180.02562 * 20 16 15 45 45 H 1.08000 * 119.64150 * 180.02562 * 21 20 16 46 46 H 1.07993 * 125.63054 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47067 * 59.99659 * 25 8 7 48 48 H 1.09000 * 109.47312 * 179.97438 * 25 8 7 49 49 H 1.09002 * 109.47153 * 300.00216 * 26 4 2 50 50 H 1.09001 * 109.47289 * 60.00300 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0397 -2.8849 2.4986 8 6 3.5697 -2.8849 2.4991 9 1 3.9333 -3.3988 1.6093 10 7 4.0577 -3.5759 3.6951 11 6 5.2796 -4.1445 3.6936 12 8 5.9779 -4.0834 2.6985 13 6 5.7675 -4.8363 4.8901 14 6 7.0115 -5.4800 5.0388 15 6 8.1054 -5.6497 4.1801 16 6 9.2007 -6.3327 4.6226 17 6 10.3884 -6.5334 3.7171 18 8 10.6154 -7.9321 3.5322 19 14 11.8958 -5.7562 4.4883 20 6 9.2115 -6.8453 5.9270 21 6 8.1467 -6.6646 6.7401 22 7 7.0486 -5.9841 6.3075 23 7 5.8381 -5.6633 6.9338 24 6 5.0816 -4.9895 6.1073 25 6 4.0797 -1.4424 2.4991 26 6 3.5700 -0.7218 1.2488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.4401 -2.1638 1.2491 35 1 1.8934 -2.6776 0.3591 36 1 1.6760 -2.3710 3.3884 37 1 1.6767 -3.9127 2.4983 38 1 3.5012 -3.6243 4.4882 39 1 8.0805 -5.2480 3.1780 40 1 10.1924 -6.0664 2.7519 41 1 10.7968 -8.4127 4.3514 42 1 12.1550 -6.3621 5.8190 43 1 13.0741 -5.9478 3.6052 44 1 10.0749 -7.3866 6.2846 45 1 8.1668 -7.0639 7.7434 46 1 4.0927 -4.6133 6.3238 47 1 3.7160 -0.9285 3.3890 48 1 5.1697 -1.4424 2.4999 49 1 3.9330 -1.2358 0.3588 50 1 3.9338 0.3057 1.2487 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_11618758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:59 Heat of formation + Delta-G solvation = 15.771991 kcal Electronic energy + Delta-G solvation = -30035.013048 eV Core-core repulsion = 26029.587582 eV Total energy + Delta-G solvation = -4005.425466 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.32401 -40.95721 -39.66907 -39.26863 -37.32419 -36.59461 -34.33819 -33.92899 -32.12589 -31.86271 -30.68666 -29.13702 -27.98278 -27.22622 -25.14899 -24.27775 -23.42382 -23.26876 -22.86233 -21.33652 -21.00068 -20.54899 -19.07845 -18.62906 -17.97451 -17.61663 -17.08837 -16.99317 -16.56067 -16.24543 -15.88696 -15.68952 -15.47693 -15.33254 -15.07729 -14.97029 -14.68383 -14.48230 -14.34658 -14.26427 -14.08283 -13.82492 -13.50002 -13.33084 -13.24811 -13.04880 -12.72965 -12.63422 -12.47367 -12.24420 -12.13145 -12.05363 -11.99535 -11.90689 -11.61968 -11.57443 -11.28900 -11.15982 -10.92022 -10.89558 -10.78177 -10.33416 -10.00622 -8.80337 -4.89657 -0.57272 -0.15012 1.01552 1.02922 1.20524 1.59187 1.88342 2.07677 2.25561 2.50413 3.07657 3.22512 3.36040 3.53292 3.70013 3.70271 3.74203 3.82031 3.85973 3.98582 4.07137 4.16109 4.19527 4.34411 4.34908 4.37341 4.39524 4.43228 4.56259 4.58498 4.59482 4.69504 4.71338 4.76942 4.84627 4.85311 5.04694 5.05793 5.08881 5.09479 5.13580 5.15064 5.18361 5.23755 5.24814 5.27551 5.34026 5.40648 5.42928 5.58392 5.60626 5.64387 5.67160 6.27749 6.45555 6.64783 7.33558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.076 0.924 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.151 3.849 9 H 0.061 0.939 10 N -0.713 5.713 11 C 0.598 3.402 12 O -0.590 6.590 13 C -0.340 4.340 14 C 0.152 3.848 15 C -0.116 4.116 16 C -0.051 4.051 17 C -0.085 4.085 18 O -0.542 6.542 19 Si 0.769 3.231 20 C -0.157 4.157 21 C 0.117 3.883 22 N -0.274 5.274 23 N -0.340 5.340 24 C 0.131 3.869 25 C -0.122 4.122 26 C -0.110 4.110 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.412 0.588 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.390 0.610 42 H -0.253 1.253 43 H -0.293 1.293 44 H 0.191 0.809 45 H 0.206 0.794 46 H 0.234 0.766 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 1.389 4.490 4.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.047 3.953 9 H 0.080 0.920 10 N -0.363 5.363 11 C 0.388 3.612 12 O -0.473 6.473 13 C -0.355 4.355 14 C 0.030 3.970 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.192 4.192 18 O -0.350 6.350 19 Si 0.669 3.331 20 C -0.178 4.178 21 C -0.008 4.008 22 N -0.038 5.038 23 N -0.160 5.160 24 C -0.050 4.050 25 C -0.160 4.160 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.168 0.832 40 H 0.140 0.860 41 H 0.241 0.759 42 H -0.177 1.177 43 H -0.220 1.220 44 H 0.208 0.792 45 H 0.222 0.778 46 H 0.250 0.750 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.049 0.984 4.752 4.853 hybrid contribution -0.426 -0.824 -0.530 1.068 sum -0.475 0.160 4.222 4.252 Atomic orbital electron populations 1.21896 0.94894 1.02089 1.01740 1.21126 0.95981 0.96067 0.97893 1.21905 1.01135 0.96003 1.01742 1.21187 0.94351 0.95724 0.98243 0.90549 1.21597 1.01303 0.94818 0.97245 1.21764 0.92105 1.01761 0.99988 1.20939 0.94846 0.92088 0.87462 0.92040 1.45680 1.16854 1.56300 1.17476 1.17035 0.81410 0.77115 0.85673 1.90751 1.57739 1.62796 1.35973 1.19733 0.97419 1.19895 0.98442 1.19551 0.96003 0.95231 0.86175 1.20650 0.90494 1.01866 1.00558 1.20566 0.95512 0.94396 0.95201 1.25303 1.02759 0.86832 1.04345 1.86681 1.92515 1.18505 1.37327 0.93420 0.72425 0.90010 0.77288 1.21095 0.99907 1.04033 0.92740 1.22192 0.82683 0.93479 1.02478 1.46301 1.13018 1.34918 1.09532 1.77569 0.91533 1.25824 1.21072 1.24598 0.99872 0.91640 0.88852 1.21849 0.99753 0.95185 0.99253 1.21585 0.95747 1.00433 0.97071 0.92477 0.91995 0.93082 0.91919 0.92519 0.92545 0.92975 0.90100 0.92502 0.89683 0.90888 0.75155 0.83220 0.86015 0.75935 1.17695 1.22028 0.79224 0.77756 0.75004 0.90779 0.93833 0.92861 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.33 8.84 71.98 0.64 0.97 16 2 C -0.09 0.13 2.51 -10.80 -0.03 0.10 16 3 C -0.15 0.16 8.84 71.98 0.64 0.80 16 4 C -0.08 0.17 1.78 -10.80 -0.02 0.15 16 5 H 0.08 -0.21 8.14 -2.39 -0.02 -0.22 16 6 C -0.11 0.32 4.85 30.60 0.15 0.46 16 7 C -0.12 0.42 5.39 30.59 0.16 0.58 16 8 C 0.15 0.23 2.45 44.99 0.11 0.34 16 9 H 0.06 0.45 7.57 -2.39 -0.02 0.43 16 10 N -0.71 -0.77 5.07 -446.59 -2.26 -3.03 16 11 C 0.60 4.96 7.75 86.42 0.67 5.63 16 12 O -0.59 -9.32 15.37 -4.42 -0.07 -9.39 16 13 C -0.34 -2.20 6.17 -19.90 -0.12 -2.32 16 14 C 0.15 1.08 6.76 39.50 0.27 1.35 16 15 C -0.12 -0.58 9.35 22.30 0.21 -0.38 16 16 C -0.05 0.04 4.53 -19.82 -0.09 -0.05 16 17 C -0.09 0.17 2.84 71.23 0.20 0.37 16 18 O -0.54 -0.06 12.88 -148.98 -1.92 -1.98 16 19 Si 0.77 -3.56 31.97 68.60 2.19 -1.36 16 20 C -0.16 0.82 8.38 22.03 0.18 1.00 16 21 C 0.12 -0.32 11.17 83.31 0.93 0.61 16 22 N -0.27 -1.19 3.86 -187.28 -0.72 -1.91 16 23 N -0.34 -1.78 12.57 -56.62 -0.71 -2.49 16 24 C 0.13 0.21 11.44 85.42 0.98 1.18 16 25 C -0.12 -0.21 5.50 30.61 0.17 -0.04 16 26 C -0.11 -0.04 4.85 30.61 0.15 0.11 16 27 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 -0.18 6.43 -2.39 -0.02 -0.20 16 29 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.06 -0.04 6.43 -2.39 -0.02 -0.05 16 33 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.08 -0.35 6.43 -2.39 -0.02 -0.36 16 35 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.41 -2.30 7.52 -92.70 -0.70 -3.00 16 39 H 0.15 1.10 7.01 -2.91 -0.02 1.08 16 40 H 0.12 -0.17 7.71 -2.39 -0.02 -0.19 16 41 H 0.39 -3.17 8.08 -74.06 -0.60 -3.76 16 42 H -0.25 1.11 7.05 99.48 0.70 1.81 16 43 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 44 H 0.19 -2.36 7.26 -2.91 -0.02 -2.38 16 45 H 0.21 -1.90 8.06 -2.91 -0.02 -1.92 16 46 H 0.23 -1.88 7.46 -2.91 -0.02 -1.90 16 47 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.07 0.01 6.43 -2.39 -0.02 0.00 16 Total: 0.00 -22.60 393.37 1.40 -21.20 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: -0.31 Total: -11.89 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.19 Total: 10.86 kcal Atomic # 7 Polarization: -3.74 SS G_CDS: -3.70 Total: -7.44 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.99 Total: -11.37 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.19 Total: -1.36 kcal Total: -22.60 1.40 -21.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_11618758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.973 kcal (2) G-P(sol) polarization free energy of solvation -22.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds