Wall clock time and date at job start Sun Mar 7 2021 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35455 * 125.56416 * 2 1 4 4 C 1.50698 * 126.06560 * 0.03268 * 3 2 1 5 5 O 1.42899 * 109.47174 * 203.17992 * 4 3 2 6 6 Si 1.86304 * 109.47480 * 323.17769 * 4 3 2 7 7 C 1.39830 * 107.86729 * 180.14578 * 3 2 1 8 8 C 1.50703 * 126.46020 * 179.86549 * 7 3 2 9 9 C 1.37872 * 107.08344 * 359.60613 * 7 3 2 10 10 C 1.46677 * 126.23568 * 180.23757 * 9 7 3 11 11 O 1.21698 * 119.99819 * 0.02562 * 10 9 7 12 12 N 1.34781 * 120.00319 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00221 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46964 * 34.99337 * 13 12 10 15 15 C 1.52994 * 109.47350 * 154.99912 * 13 12 10 16 16 C 1.52997 * 109.47043 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47161 * 299.99912 * 16 15 13 18 18 H 1.09004 * 109.46806 * 299.99797 * 17 16 15 19 19 C 1.53000 * 109.47220 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47130 * 59.99616 * 19 17 16 21 21 C 1.52995 * 109.47233 * 179.97438 * 19 17 16 22 22 C 1.52994 * 109.47070 * 60.00104 * 17 16 15 23 23 C 1.53000 * 109.47318 * 300.00209 * 22 17 16 24 24 N 1.35534 * 125.56692 * 179.70585 * 2 1 3 25 25 H 1.08993 * 109.47205 * 276.23256 * 1 2 3 26 26 H 1.09003 * 109.47095 * 36.23115 * 1 2 3 27 27 H 1.09001 * 109.46878 * 156.23095 * 1 2 3 28 28 H 1.08997 * 109.47360 * 83.17919 * 4 3 2 29 29 H 0.96697 * 114.00058 * 59.99905 * 5 4 3 30 30 H 1.48497 * 110.00431 * 180.02562 * 6 4 3 31 31 H 1.48502 * 109.99633 * 301.32267 * 6 4 3 32 32 H 1.08995 * 109.46987 * 269.71937 * 8 7 3 33 33 H 1.08994 * 109.46684 * 149.71317 * 8 7 3 34 34 H 1.08994 * 109.46516 * 29.71460 * 8 7 3 35 35 H 0.96997 * 119.99426 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47106 * 299.99891 * 15 13 12 37 37 H 1.08997 * 109.47251 * 59.99597 * 15 13 12 38 38 H 1.08997 * 109.47403 * 59.99718 * 16 15 13 39 39 H 1.09007 * 109.47329 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.46882 * 300.00153 * 19 17 16 41 41 H 1.09005 * 109.47105 * 60.00677 * 20 19 17 42 42 H 1.09004 * 109.47021 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47418 * 300.00235 * 20 19 17 44 44 H 1.09004 * 109.47303 * 59.99583 * 21 19 17 45 45 H 1.08995 * 109.47333 * 179.97438 * 21 19 17 46 46 H 1.08998 * 109.47393 * 299.99940 * 21 19 17 47 47 H 1.08997 * 109.47251 * 60.00343 * 22 17 16 48 48 H 1.09001 * 109.47106 * 180.02562 * 22 17 16 49 49 H 1.09004 * 109.46761 * 300.00431 * 23 22 17 50 50 H 1.08998 * 109.47580 * 180.02562 * 23 22 17 51 51 H 0.97004 * 125.67398 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0007 5 8 2.8449 3.3746 -0.5298 6 14 0.2893 2.6788 -1.0512 7 6 3.6270 0.6768 -0.0034 8 6 4.8486 1.5593 -0.0075 9 6 3.6122 -0.7018 0.0037 10 6 4.7860 -1.5814 0.0081 11 8 5.9049 -1.1029 0.0062 12 7 4.6254 -2.9196 0.0145 13 6 5.7977 -3.7981 0.0195 14 1 6.5929 -3.3394 0.6072 15 6 5.4215 -5.1471 0.6354 16 6 6.6457 -6.0648 0.6400 17 6 7.1296 -6.2768 -0.7959 18 1 6.3340 -6.7353 -1.3834 19 6 8.3534 -7.1950 -0.7913 20 6 7.9767 -8.5440 -0.1756 21 6 8.8369 -7.4076 -2.2272 22 6 7.5058 -4.9278 -1.4118 23 6 6.2816 -4.0101 -1.4164 24 7 2.2953 -1.1025 0.0057 25 1 -0.3633 0.1116 1.0215 26 1 -0.3633 0.8290 -0.6074 27 1 -0.3633 -0.9405 -0.4142 28 1 1.5900 2.8381 1.0213 29 1 3.1006 3.1593 -1.4372 30 1 -0.1888 4.0847 -1.0593 31 1 0.5814 2.2342 -2.4377 32 1 5.1432 1.7672 -1.0360 33 1 5.6641 1.0531 0.5089 34 1 4.6218 2.4959 0.5019 35 1 3.7335 -3.3009 0.0164 36 1 5.0763 -4.9960 1.6582 37 1 4.6263 -5.6057 0.0477 38 1 7.4412 -5.6064 1.2275 39 1 6.3776 -7.0261 1.0784 40 1 9.1490 -6.7370 -0.2037 41 1 7.1810 -9.0021 -0.7633 42 1 8.8487 -9.1980 -0.1719 43 1 7.6319 -8.3929 0.8474 44 1 9.1052 -6.4466 -2.6663 45 1 9.7090 -8.0613 -2.2240 46 1 8.0412 -7.8658 -2.8145 47 1 8.3013 -4.4694 -0.8243 48 1 7.8501 -5.0788 -2.4349 49 1 5.4861 -4.4685 -2.0039 50 1 6.5495 -3.0491 -1.8556 51 1 1.9834 -2.0210 0.0100 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:04:03 Heat of formation + Delta-G solvation = -53.433191 kcal Electronic energy + Delta-G solvation = -28102.909217 eV Core-core repulsion = 24389.049503 eV Total energy + Delta-G solvation = -3713.859714 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69592 -40.94711 -39.58810 -37.91192 -36.75988 -34.36021 -33.66508 -32.94250 -31.94897 -29.76007 -29.31980 -28.02689 -27.27200 -26.29831 -23.96807 -23.51085 -22.27985 -21.37013 -20.81010 -20.59536 -20.31552 -19.28383 -17.82107 -17.27876 -16.82195 -16.58394 -16.32483 -15.94031 -15.67899 -15.33481 -15.23767 -15.03560 -14.81597 -14.54864 -14.46777 -14.34475 -14.27539 -14.10988 -13.79604 -13.68141 -13.41105 -13.27723 -13.12695 -13.08275 -12.80947 -12.69234 -12.56368 -12.39927 -12.32269 -12.12699 -12.06935 -11.88472 -11.65017 -11.35544 -11.32211 -11.02794 -10.94127 -10.62216 -10.19427 -9.50805 -8.99683 -4.75577 0.34366 1.20722 1.63485 1.68463 1.93069 2.06026 2.13432 2.25828 3.41058 3.60020 3.65873 3.71772 3.81746 3.86145 3.95565 3.99971 4.08850 4.19459 4.26675 4.29905 4.35018 4.44620 4.47734 4.50836 4.61025 4.62400 4.63713 4.65540 4.77007 4.79795 4.81272 4.82841 4.87254 4.98276 4.99293 5.01284 5.05824 5.10549 5.12036 5.16152 5.17249 5.21160 5.26622 5.29444 5.34851 5.35320 5.45902 5.53223 5.60879 5.68277 5.81762 6.38223 6.50504 6.58422 7.09545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.082 3.918 3 C -0.230 4.230 4 C -0.046 4.046 5 O -0.549 6.549 6 Si 0.741 3.259 7 C -0.074 4.074 8 C -0.084 4.084 9 C -0.080 4.080 10 C 0.587 3.413 11 O -0.568 6.568 12 N -0.714 5.714 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.076 4.076 18 H 0.077 0.923 19 C -0.092 4.092 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.111 4.111 23 C -0.122 4.122 24 N -0.516 5.516 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.379 0.621 30 H -0.302 1.302 31 H -0.298 1.298 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.040 0.960 51 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -7.792 0.946 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C -0.236 4.236 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.647 3.353 7 C -0.083 4.083 8 C -0.141 4.141 9 C -0.192 4.192 10 C 0.376 3.624 11 O -0.447 6.447 12 N -0.365 5.365 13 C 0.045 3.955 14 H 0.081 0.919 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.095 4.095 18 H 0.095 0.905 19 C -0.111 4.111 20 C -0.206 4.206 21 C -0.208 4.208 22 C -0.149 4.149 23 C -0.161 4.161 24 N -0.115 5.115 25 H 0.140 0.860 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.228 0.772 30 H -0.231 1.231 31 H -0.225 1.225 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.059 0.941 51 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -7.781 -7.065 0.860 10.545 hybrid contribution 1.279 0.065 -0.813 1.517 sum -6.502 -7.000 0.047 9.554 Atomic orbital electron populations 1.20791 0.84199 1.03382 1.05699 1.20697 0.95167 0.84829 1.03046 1.19701 0.92535 0.95813 1.15591 1.24540 0.99101 0.86176 1.05643 1.86514 1.56907 1.58141 1.34068 0.94410 0.82046 0.80575 0.78244 1.19923 0.95380 0.91519 1.01487 1.20277 0.93987 0.98217 1.01644 1.19922 0.83859 0.93659 1.21734 1.17236 0.87212 0.82231 0.75741 1.90818 1.25906 1.75861 1.52148 1.45824 1.10683 1.04741 1.75223 1.20998 0.87407 0.90439 0.96661 0.91879 1.21758 0.99338 0.92813 1.01553 1.21602 0.96961 0.99893 0.96537 1.21186 0.97477 0.94395 0.96403 0.90471 1.21127 0.97270 0.96014 0.96675 1.21895 1.01431 0.96194 1.01072 1.21906 1.01088 1.01547 0.96284 1.21579 0.96832 0.95084 1.01411 1.21840 0.98794 0.99110 0.96332 1.41685 1.03907 1.09284 1.56624 0.85991 0.89223 0.87154 0.86406 0.77225 1.23072 1.22530 0.92128 0.92734 0.90795 0.75490 0.90673 0.89603 0.92474 0.89851 0.91940 0.92419 0.93066 0.91907 0.92686 0.92931 0.92471 0.92889 0.91249 0.90709 0.94112 0.72474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 1.15 9.44 71.24 0.67 1.82 16 2 C 0.08 -0.34 6.81 41.34 0.28 -0.06 16 3 C -0.23 -0.59 5.30 -20.12 -0.11 -0.69 16 4 C -0.05 -0.09 3.05 71.24 0.22 0.13 16 5 O -0.55 -3.47 10.26 -148.98 -1.53 -5.00 16 6 Si 0.74 -0.73 27.78 68.60 1.91 1.18 16 7 C -0.07 -0.58 6.16 -19.56 -0.12 -0.70 16 8 C -0.08 -0.87 8.62 71.24 0.61 -0.25 16 9 C -0.08 -0.37 7.06 40.35 0.28 -0.08 16 10 C 0.59 4.30 7.75 86.45 0.67 4.97 16 11 O -0.57 -9.16 14.46 -4.34 -0.06 -9.23 16 12 N -0.71 0.47 5.07 -446.50 -2.26 -1.79 16 13 C 0.15 0.06 2.45 44.99 0.11 0.17 16 14 H 0.06 0.41 7.58 -2.38 -0.02 0.39 16 15 C -0.12 0.60 5.39 30.59 0.16 0.77 16 16 C -0.11 0.45 4.85 30.59 0.15 0.60 16 17 C -0.08 0.23 1.77 -10.79 -0.02 0.21 16 18 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 19 C -0.09 0.18 2.51 -10.80 -0.03 0.16 16 20 C -0.15 0.45 8.84 71.98 0.64 1.08 16 21 C -0.15 0.21 8.84 71.98 0.64 0.85 16 22 C -0.11 0.00 4.85 30.59 0.15 0.15 16 23 C -0.12 -0.14 5.49 30.59 0.17 0.02 16 24 N -0.52 2.32 5.99 -171.93 -1.03 1.29 16 25 H 0.12 -2.09 8.14 -2.39 -0.02 -2.11 16 26 H 0.09 -1.16 2.78 -2.39 -0.01 -1.17 16 27 H 0.11 -1.98 8.14 -2.39 -0.02 -2.00 16 28 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 29 H 0.38 0.97 8.56 -74.06 -0.63 0.34 16 30 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 31 H -0.30 -1.50 7.11 99.48 0.71 -0.79 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.78 6.48 -2.39 -0.02 0.77 16 34 H 0.07 0.75 6.76 -2.39 -0.02 0.74 16 35 H 0.41 -3.28 7.73 -92.71 -0.72 -4.00 16 36 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.08 -0.47 6.43 -2.38 -0.02 -0.49 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.06 -0.20 8.14 -2.38 -0.02 -0.21 16 42 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 -0.24 6.43 -2.39 -0.02 -0.26 16 44 H 0.05 -0.04 6.43 -2.38 -0.02 -0.06 16 45 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.07 0.01 6.43 -2.39 -0.02 -0.01 16 49 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 50 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.43 -5.39 8.19 -92.71 -0.76 -6.15 16 Total: 0.00 -22.32 380.87 0.37 -21.95 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: -1.12 Total: -17.52 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 4.48 Total: 9.12 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -3.30 Total: -0.50 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.59 Total: -14.22 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 1.91 Total: 1.18 kcal Total: -22.32 0.37 -21.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.485 kcal (2) G-P(sol) polarization free energy of solvation -22.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds