Wall clock time and date at job start Sun Mar 7 2021 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35720 * 117.00081 * 2 1 4 4 C 1.38676 * 119.86408 * 359.97438 * 3 2 1 5 5 C 1.38449 * 120.03322 * 179.72234 * 4 3 2 6 6 O 1.35656 * 120.12157 * 180.29474 * 5 4 3 7 7 C 1.42903 * 117.00012 * 0.26196 * 6 5 4 8 8 C 1.40291 * 119.75694 * 0.55527 * 5 4 3 9 9 C 1.47300 * 120.13736 * 179.74793 * 8 5 4 10 10 O 1.21623 * 119.99780 * 359.71838 * 9 8 5 11 11 N 1.34777 * 120.00251 * 179.72296 * 9 8 5 12 12 C 1.46498 * 119.99828 * 180.27604 * 11 9 8 13 13 H 1.08995 * 109.47013 * 324.72129 * 12 11 9 14 14 C 1.52999 * 109.47257 * 84.72116 * 12 11 9 15 15 C 1.53003 * 109.47010 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 300.00125 * 15 14 12 17 17 H 1.08995 * 109.47275 * 299.99879 * 16 15 14 18 18 C 1.53003 * 109.47127 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47010 * 59.99875 * 18 16 15 20 20 C 1.52997 * 109.47127 * 179.97438 * 18 16 15 21 21 C 1.52999 * 109.47278 * 60.00039 * 16 15 14 22 22 C 1.52994 * 109.47024 * 299.99839 * 21 16 15 23 23 C 1.39860 * 119.72793 * 359.46444 * 8 5 4 24 24 C 1.37540 * 119.96450 * 0.26101 * 23 8 5 25 25 C 1.50708 * 119.87569 * 179.97438 * 24 23 8 26 26 O 1.42899 * 109.46783 * 254.99332 * 25 24 23 27 27 Si 1.86291 * 109.47360 * 14.99810 * 25 24 23 28 28 H 1.09001 * 109.46935 * 59.99746 * 1 2 3 29 29 H 1.08997 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46711 * 300.00129 * 1 2 3 31 31 H 1.08002 * 119.98651 * 359.97438 * 4 3 2 32 32 H 1.08995 * 109.46984 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.46799 * 299.99450 * 7 6 5 34 34 H 1.08997 * 109.47405 * 59.99563 * 7 6 5 35 35 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 36 36 H 1.08996 * 109.47245 * 299.99926 * 14 12 11 37 37 H 1.08995 * 109.47098 * 60.00065 * 14 12 11 38 38 H 1.08996 * 109.47077 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.47062 * 60.00488 * 15 14 12 40 40 H 1.09003 * 109.47062 * 300.00363 * 18 16 15 41 41 H 1.09003 * 109.47054 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47269 * 299.99709 * 19 18 16 43 43 H 1.09000 * 109.47519 * 60.00162 * 19 18 16 44 44 H 1.08996 * 109.47253 * 59.99972 * 20 18 16 45 45 H 1.09003 * 109.47146 * 180.02562 * 20 18 16 46 46 H 1.09000 * 109.46951 * 299.99562 * 20 18 16 47 47 H 1.08996 * 109.47245 * 179.97438 * 21 16 15 48 48 H 1.09003 * 109.46809 * 59.99699 * 21 16 15 49 49 H 1.08994 * 109.47599 * 300.00048 * 22 21 16 50 50 H 1.08998 * 109.47530 * 179.97438 * 22 21 16 51 51 H 1.08005 * 120.01765 * 180.23312 * 23 8 5 52 52 H 1.09003 * 109.46870 * 135.00146 * 25 24 23 53 53 H 0.96694 * 114.00751 * 300.00450 * 26 25 24 54 54 H 1.48497 * 110.00089 * 298.68092 * 27 25 24 55 55 H 1.48503 * 110.00056 * 60.00103 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2871 2.3705 -0.0005 5 6 1.9120 3.6059 0.0053 6 8 1.1723 4.7430 0.0108 7 6 -0.2488 4.5925 0.0161 8 6 3.3131 3.6776 -0.0001 9 6 3.9866 4.9876 0.0004 10 8 3.3280 6.0100 0.0003 11 7 5.3328 5.0532 0.0009 12 6 6.0026 6.3561 0.0075 13 1 5.4227 7.0657 -0.5825 14 6 6.1176 6.8632 1.4464 15 6 6.8177 8.2236 1.4533 16 6 8.2162 8.0805 0.8496 17 1 8.7958 7.3707 1.4397 18 6 8.9166 9.4409 0.8571 19 6 9.0316 9.9473 2.2963 20 6 10.3154 9.2977 0.2540 21 6 8.1012 7.5735 -0.5893 22 6 7.4012 6.2131 -0.5962 23 6 4.0678 2.5001 0.0000 24 6 3.4352 1.2787 0.0000 25 6 4.2504 0.0111 -0.0004 26 8 4.2142 -0.5779 -1.3018 27 14 6.0134 0.4064 0.4537 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2087 2.3112 -0.0014 32 1 -0.7183 5.5761 0.0206 33 1 -0.5595 4.0453 -0.8740 34 1 -0.5525 4.0411 0.9059 35 1 5.8581 4.2378 0.0012 36 1 5.1213 6.9647 1.8766 37 1 6.6975 6.1535 2.0364 38 1 6.8992 8.5851 2.4784 39 1 6.2381 8.9335 0.8632 40 1 8.3371 10.1511 0.2673 41 1 9.5310 10.9162 2.3017 42 1 8.0352 10.0493 2.7263 43 1 9.6111 9.2371 2.8862 44 1 10.2338 8.9366 -0.7711 45 1 10.8145 10.2667 0.2598 46 1 10.8946 8.5876 0.8444 47 1 9.0975 7.4720 -1.0195 48 1 7.5216 8.2834 -1.1794 49 1 7.9807 5.5032 -0.0061 50 1 7.3188 5.8520 -1.6213 51 1 5.1467 2.5498 -0.0003 52 1 3.8359 -0.6876 0.7263 53 1 3.3255 -0.8101 -1.6040 54 1 6.6001 1.3333 -0.5471 55 1 6.0645 1.0196 1.8053 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12297780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:04:07 Heat of formation + Delta-G solvation = -129.690828 kcal Electronic energy + Delta-G solvation = -34487.220740 eV Core-core repulsion = 30069.889633 eV Total energy + Delta-G solvation = -4417.331107 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26169 -41.08381 -40.23860 -39.58982 -38.45149 -37.05090 -36.71100 -34.25165 -32.34419 -31.97615 -31.95182 -29.48552 -29.05636 -28.13091 -28.02662 -26.14141 -25.05215 -23.81065 -23.52943 -22.76648 -21.58839 -21.21173 -20.62930 -20.13789 -18.78858 -18.64481 -17.95751 -17.46458 -17.26405 -16.99685 -16.68030 -16.55070 -16.36719 -15.93939 -15.84897 -15.57550 -15.39161 -15.22045 -15.19199 -14.60866 -14.57547 -14.37814 -14.26202 -14.21317 -13.97068 -13.66842 -13.45766 -13.39980 -13.08918 -12.82363 -12.71443 -12.70422 -12.61073 -12.60210 -12.33981 -12.22702 -12.14046 -12.08681 -11.79031 -11.65901 -11.42596 -11.35719 -11.26935 -11.07686 -10.99741 -10.83696 -10.20226 -10.05286 -9.32089 -4.82028 -0.43025 -0.06520 1.35351 1.56863 1.67815 1.90174 1.96148 1.96930 2.06192 2.45815 3.28046 3.39965 3.50920 3.60861 3.63252 3.65317 3.75401 3.92810 3.94786 4.00003 4.03808 4.08180 4.13360 4.20480 4.22246 4.24211 4.26833 4.28868 4.32926 4.37658 4.46175 4.48117 4.55611 4.60789 4.62394 4.64456 4.65138 4.75246 4.78530 4.81620 4.89506 4.96812 4.98976 5.00209 5.04569 5.11084 5.13224 5.13880 5.16256 5.25054 5.33039 5.34089 5.44979 5.52633 5.60026 5.89526 6.15925 6.36493 6.63570 7.08745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.211 3.789 4 C -0.303 4.303 5 C 0.216 3.784 6 O -0.305 6.305 7 C 0.009 3.991 8 C -0.230 4.230 9 C 0.561 3.439 10 O -0.559 6.559 11 N -0.721 5.721 12 C 0.148 3.852 13 H 0.066 0.934 14 C -0.123 4.123 15 C -0.109 4.109 16 C -0.078 4.078 17 H 0.076 0.924 18 C -0.091 4.091 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.013 4.013 24 C -0.199 4.199 25 C -0.077 4.077 26 O -0.545 6.545 27 Si 0.794 3.206 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.171 0.829 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.143 0.857 52 H 0.086 0.914 53 H 0.373 0.627 54 H -0.271 1.271 55 H -0.262 1.262 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -5.757 0.931 5.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.222 6.222 3 C 0.163 3.837 4 C -0.323 4.323 5 C 0.167 3.833 6 O -0.215 6.215 7 C -0.085 4.085 8 C -0.234 4.234 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.373 5.373 12 C 0.044 3.956 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.147 4.147 16 C -0.096 4.096 17 H 0.094 0.906 18 C -0.110 4.110 19 C -0.208 4.208 20 C -0.206 4.206 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.032 4.032 24 C -0.200 4.200 25 C -0.185 4.185 26 O -0.352 6.352 27 Si 0.694 3.306 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.188 0.812 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.240 0.760 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.160 0.840 52 H 0.104 0.896 53 H 0.222 0.778 54 H -0.198 1.198 55 H -0.187 1.187 Dipole moment (debyes) X Y Z Total from point charges 0.384 -4.304 1.176 4.478 hybrid contribution -2.296 0.358 -0.178 2.330 sum -1.912 -3.946 0.997 4.497 Atomic orbital electron populations 1.23536 0.75478 1.06520 1.02712 1.86047 1.24128 1.25366 1.86667 1.18795 0.91088 0.84623 0.89164 1.21475 1.02351 0.90411 1.18032 1.18941 0.89933 0.85915 0.88505 1.86371 1.20950 1.28249 1.85964 1.23512 0.76383 1.05771 1.02824 1.19207 0.91404 0.93598 1.19231 1.18092 0.82551 0.88492 0.75883 1.90803 1.65478 1.36764 1.50803 1.45992 1.05656 1.10143 1.75493 1.21039 0.93794 0.83836 0.96952 0.91573 1.21851 1.00056 0.98167 0.96090 1.21571 0.95799 0.95712 1.01596 1.21198 0.95208 0.96908 0.96277 0.90586 1.21118 0.96685 0.96340 0.96810 1.21906 1.01731 1.00995 0.96153 1.21894 0.95871 1.01757 1.01087 1.21587 1.01160 0.95280 0.96718 1.21798 0.93288 0.99319 1.01495 1.20850 0.99187 0.90161 0.92973 1.19697 0.91660 0.96530 1.12131 1.25321 1.12945 0.91579 0.88663 1.86673 1.34240 1.81997 1.32272 0.92336 0.75889 0.85367 0.77014 0.91142 0.85426 0.91341 0.81190 0.86814 0.90798 0.90798 0.76020 0.93956 0.90966 0.90982 0.92666 0.91775 0.92780 0.92626 0.92533 0.91983 0.92892 0.92487 0.89768 0.92214 0.90028 0.90915 0.83999 0.89650 0.77791 1.19774 1.18701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 2 O -0.31 0.36 9.36 -90.42 -0.85 -0.49 16 3 C 0.21 0.56 6.62 22.60 0.15 0.71 16 4 C -0.30 -0.80 8.01 22.42 0.18 -0.62 16 5 C 0.22 1.91 6.70 22.82 0.15 2.07 16 6 O -0.30 -3.20 8.56 -68.75 -0.59 -3.78 16 7 C 0.01 0.00 9.81 113.37 1.11 1.11 16 8 C -0.23 -2.31 5.89 -20.00 -0.12 -2.43 16 9 C 0.56 7.31 7.72 86.63 0.67 7.98 16 10 O -0.56 -11.39 14.81 16.86 0.25 -11.14 16 11 N -0.72 -4.78 5.03 -445.92 -2.24 -7.02 16 12 C 0.15 0.78 2.45 44.99 0.11 0.89 16 13 H 0.07 0.68 7.58 -2.39 -0.02 0.67 16 14 C -0.12 -0.60 5.49 30.60 0.17 -0.43 16 15 C -0.11 -0.25 4.85 30.59 0.15 -0.11 16 16 C -0.08 0.04 1.77 -10.79 -0.02 0.02 16 17 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 18 C -0.09 0.04 2.51 -10.79 -0.03 0.01 16 19 C -0.15 0.04 8.84 71.98 0.64 0.67 16 20 C -0.15 0.22 8.84 71.98 0.64 0.86 16 21 C -0.11 0.10 4.85 30.59 0.15 0.25 16 22 C -0.12 0.02 5.39 30.59 0.16 0.19 16 23 C -0.01 -0.08 8.14 22.50 0.18 0.10 16 24 C -0.20 -0.84 5.28 -19.80 -0.10 -0.94 16 25 C -0.08 -0.09 2.32 71.24 0.17 0.08 16 26 O -0.55 -1.29 12.65 -148.98 -1.89 -3.18 16 27 Si 0.79 -1.10 30.39 68.60 2.09 0.98 16 28 H 0.07 -0.66 7.65 -2.39 -0.02 -0.68 16 29 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 30 H 0.07 -0.63 7.65 -2.38 -0.02 -0.64 16 31 H 0.17 -0.61 4.50 -2.91 -0.01 -0.62 16 32 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 -0.29 7.65 -2.39 -0.02 -0.31 16 34 H 0.07 -0.30 7.67 -2.39 -0.02 -0.31 16 35 H 0.40 0.82 6.62 -92.71 -0.61 0.20 16 36 H 0.04 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.13 6.43 -2.39 -0.02 0.11 16 39 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 41 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.05 0.02 6.43 -2.39 -0.02 0.00 16 43 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.06 -0.14 6.43 -2.39 -0.02 -0.15 16 45 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.08 -0.24 6.43 -2.39 -0.02 -0.26 16 48 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.14 0.41 3.24 -2.91 -0.01 0.40 16 52 H 0.09 -0.08 7.82 -2.39 -0.02 -0.10 16 53 H 0.37 -0.57 8.59 -74.06 -0.64 -1.20 16 54 H -0.27 -0.54 6.80 99.48 0.68 0.14 16 55 H -0.26 -0.29 7.11 99.48 0.71 0.41 16 Total: 0.00 -18.94 418.65 1.91 -17.03 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -0.33 Total: -3.84 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.47 Total: 11.43 kcal Atomic # 7 Polarization: -4.78 SS G_CDS: -2.24 Total: -7.02 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -3.07 Total: -18.59 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.09 Total: 0.98 kcal Total: -18.94 1.91 -17.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12297780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.657 kcal (2) G-P(sol) polarization free energy of solvation -18.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds