Wall clock time and date at job start Sun Mar 7 2021 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.52997 * 109.47131 * 119.99938 * 2 1 3 5 5 H 1.08993 * 109.47194 * 299.99846 * 4 2 1 6 6 C 1.52999 * 109.46991 * 60.00689 * 4 2 1 7 7 C 1.52997 * 109.46991 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 4 9 9 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 10 10 N 1.46507 * 109.47258 * 179.97438 * 8 7 6 11 11 C 1.34778 * 119.99609 * 85.00044 * 10 8 7 12 12 O 1.21565 * 120.00118 * 0.02562 * 11 10 8 13 13 C 1.47690 * 119.99891 * 180.02562 * 11 10 8 14 14 C 1.39820 * 120.16709 * 180.02562 * 13 11 10 15 15 F 1.35100 * 120.10925 * 0.02562 * 14 13 11 16 16 C 1.38325 * 119.77882 * 180.02562 * 14 13 11 17 17 C 1.38207 * 120.11750 * 359.97438 * 16 14 13 18 18 C 1.38455 * 120.33812 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.88986 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47299 * 245.00362 * 19 18 17 21 21 Si 1.86305 * 109.47018 * 4.99855 * 19 18 17 22 22 C 1.37858 * 120.22186 * 359.72521 * 18 17 16 23 23 C 1.53002 * 109.46972 * 60.00459 * 8 7 6 24 24 C 1.52997 * 109.46817 * 299.99733 * 23 8 7 25 25 H 1.08992 * 109.47534 * 299.99582 * 1 2 3 26 26 H 1.08996 * 109.47134 * 60.00388 * 1 2 3 27 27 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47298 * 240.00221 * 2 1 3 29 29 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 30 30 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 32 32 H 1.09002 * 109.46719 * 299.99711 * 6 4 2 33 33 H 1.08993 * 109.47839 * 59.99553 * 6 4 2 34 34 H 1.09001 * 109.47289 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47611 * 59.99933 * 7 6 4 36 36 H 0.97001 * 120.00071 * 265.00501 * 10 8 7 37 37 H 1.08001 * 119.94219 * 179.97438 * 16 14 13 38 38 H 1.07998 * 119.82942 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47191 * 125.00006 * 19 18 17 40 40 H 0.96701 * 114.00548 * 180.02562 * 20 19 18 41 41 H 1.48503 * 109.99981 * 178.67781 * 21 19 18 42 42 H 1.48495 * 110.00251 * 300.00191 * 21 19 18 43 43 H 1.08000 * 120.06524 * 180.28060 * 22 18 17 44 44 H 1.09002 * 109.47070 * 179.97438 * 23 8 7 45 45 H 1.08996 * 109.47407 * 59.99513 * 23 8 7 46 46 H 1.09001 * 109.47502 * 300.00518 * 24 23 8 47 47 H 1.09001 * 109.47289 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8848 2.4987 8 6 3.5695 -2.8848 2.4993 9 1 3.9333 -3.3987 1.6096 10 7 4.0574 -3.5747 3.6962 11 6 4.1861 -4.9163 3.6951 12 8 3.8978 -5.5539 2.7010 13 6 4.6774 -5.6119 4.9018 14 6 4.8128 -7.0035 4.9044 15 9 4.4950 -7.7175 3.8024 16 6 5.2732 -7.6468 6.0392 17 6 5.5988 -6.9165 7.1664 18 6 5.4666 -5.5383 7.1692 19 6 5.8251 -4.7519 8.4037 20 8 4.6508 -4.1313 8.9309 21 14 6.5486 -5.8982 9.6818 22 6 5.0139 -4.8824 6.0443 23 6 4.0795 -1.4423 2.4994 24 6 3.5700 -0.7212 1.2499 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.4401 -2.1638 1.2491 33 1 1.8934 -2.6776 0.3592 34 1 1.6760 -3.9124 2.4989 35 1 1.6758 -2.3709 3.3885 36 1 4.2877 -3.0659 4.4893 37 1 5.3784 -8.7217 6.0443 38 1 5.9582 -7.4235 8.0497 39 1 6.5568 -3.9860 8.1468 40 1 4.8072 -3.6068 9.7282 41 1 6.9358 -5.1298 10.8922 42 1 5.5607 -6.9473 10.0406 43 1 4.9161 -3.8069 6.0477 44 1 5.1695 -1.4422 2.5003 45 1 3.7157 -0.9283 3.3891 46 1 3.9337 -1.2352 0.3601 47 1 3.9337 0.3063 1.2496 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12335834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:04:12 Heat of formation + Delta-G solvation = -102.751023 kcal Electronic energy + Delta-G solvation = -27617.866729 eV Core-core repulsion = 23680.689466 eV Total energy + Delta-G solvation = -3937.177263 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.03231 -41.54371 -40.37920 -39.51933 -37.61211 -36.74531 -34.40945 -32.69755 -32.36758 -31.94202 -29.42485 -28.01896 -26.60863 -25.62044 -24.02299 -23.50582 -22.70175 -21.58819 -21.10940 -20.60808 -19.17932 -18.60290 -18.25528 -17.92930 -17.09970 -16.92938 -16.57131 -16.23398 -15.92930 -15.71770 -15.63223 -15.27690 -15.16659 -14.77034 -14.56271 -14.48854 -14.38366 -14.20463 -14.06912 -13.82261 -13.41637 -13.34643 -13.08284 -12.83536 -12.75969 -12.68215 -12.43182 -12.31593 -12.11796 -12.05985 -11.81902 -11.63867 -11.34440 -11.31250 -11.01556 -10.91402 -10.51197 -10.40645 -10.10520 -9.83063 -4.89041 -0.51604 -0.04406 1.29975 1.58241 1.63543 1.93270 1.99049 2.43930 3.02991 3.26556 3.38306 3.53419 3.64077 3.68021 3.73174 3.77410 3.99704 4.02539 4.09728 4.11669 4.26588 4.30549 4.34513 4.35984 4.47980 4.51637 4.57383 4.63451 4.66040 4.75261 4.78587 4.80721 4.82423 4.91808 4.99329 5.00360 5.02099 5.06728 5.12562 5.15142 5.17023 5.18702 5.27297 5.33290 5.36021 5.45645 5.54121 5.57459 5.61924 6.35714 6.60993 7.04200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.064 0.936 10 N -0.706 5.706 11 C 0.554 3.446 12 O -0.571 6.571 13 C -0.189 4.189 14 C 0.132 3.868 15 F -0.136 7.136 16 C -0.152 4.152 17 C -0.055 4.055 18 C -0.095 4.095 19 C -0.079 4.079 20 O -0.556 6.556 21 Si 0.758 3.242 22 C -0.025 4.025 23 C -0.117 4.117 24 C -0.111 4.111 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.110 0.890 40 H 0.398 0.602 41 H -0.287 1.287 42 H -0.295 1.295 43 H 0.160 0.840 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 5.211 5.630 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.148 4.148 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.082 0.918 10 N -0.358 5.358 11 C 0.342 3.658 12 O -0.451 6.451 13 C -0.193 4.193 14 C 0.112 3.888 15 F -0.114 7.114 16 C -0.171 4.171 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.188 4.188 20 O -0.367 6.367 21 Si 0.663 3.337 22 C -0.043 4.043 23 C -0.155 4.155 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.127 0.873 40 H 0.249 0.751 41 H -0.214 1.214 42 H -0.223 1.223 43 H 0.178 0.822 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.293 4.155 5.163 7.897 hybrid contribution -0.955 0.563 0.331 1.157 sum 3.338 4.718 5.494 7.974 Atomic orbital electron populations 1.21907 0.95433 1.01707 1.01794 1.21125 0.95641 0.96462 0.97814 1.21894 1.01474 0.95425 1.01785 1.21195 0.95345 0.94638 0.98370 0.90501 1.21576 1.00820 0.95589 0.96854 1.21854 0.95015 0.99812 0.99577 1.21052 0.93842 0.93603 0.87253 0.91766 1.45877 1.66456 1.05672 1.17750 1.18322 0.77441 0.83079 0.86975 1.90832 1.51594 1.66883 1.35833 1.20080 1.09761 0.92806 0.96652 1.18195 0.97772 0.88761 0.84090 1.91556 1.89872 1.77891 1.52128 1.21358 1.01795 1.02817 0.91079 1.21369 0.94905 0.93021 0.97975 1.19495 1.01453 0.93665 0.94936 1.24900 0.91632 1.03272 0.98981 1.86540 1.32789 1.69233 1.48105 0.94201 0.84557 0.77846 0.77090 1.21211 0.92679 1.01021 0.89418 1.21770 1.01406 0.92186 1.00144 1.21600 0.94909 1.01237 0.97182 0.92509 0.92881 0.92719 0.91875 0.92464 0.91846 0.93025 0.91243 0.92827 0.94273 0.90682 0.74795 0.81440 0.81930 0.87254 0.75051 1.21422 1.22253 0.82207 0.90381 0.89642 0.92371 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 8.84 71.98 0.64 0.74 16 2 C -0.09 0.12 2.51 -10.79 -0.03 0.09 16 3 C -0.15 0.37 8.84 71.98 0.64 1.00 16 4 C -0.08 0.15 1.77 -10.79 -0.02 0.13 16 5 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 6 C -0.11 -0.14 4.85 30.59 0.15 0.01 16 7 C -0.12 -0.37 5.49 30.59 0.17 -0.20 16 8 C 0.15 0.30 2.45 44.99 0.11 0.41 16 9 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 10 N -0.71 -1.14 5.03 -445.55 -2.24 -3.38 16 11 C 0.55 5.16 7.73 86.74 0.67 5.84 16 12 O -0.57 -10.74 15.00 -3.92 -0.06 -10.80 16 13 C -0.19 -1.03 5.88 -20.05 -0.12 -1.15 16 14 C 0.13 0.98 7.29 22.67 0.17 1.14 16 15 F -0.14 -1.92 15.55 44.97 0.70 -1.22 16 16 C -0.15 -0.05 10.01 22.28 0.22 0.17 16 17 C -0.06 0.17 8.66 22.31 0.19 0.37 16 18 C -0.10 0.27 5.38 -19.90 -0.11 0.16 16 19 C -0.08 0.54 2.79 71.24 0.20 0.74 16 20 O -0.56 2.20 12.81 -148.98 -1.91 0.29 16 21 Si 0.76 -5.21 29.84 68.60 2.05 -3.16 16 22 C -0.02 0.03 9.17 22.53 0.21 0.24 16 23 C -0.12 0.46 5.39 30.59 0.16 0.62 16 24 C -0.11 0.35 4.85 30.60 0.15 0.50 16 25 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.05 0.00 6.43 -2.39 -0.02 -0.01 16 28 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.06 -0.22 6.43 -2.39 -0.02 -0.23 16 31 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.07 0.09 6.43 -2.39 -0.02 0.07 16 33 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.41 -2.12 6.63 -92.71 -0.62 -2.74 16 37 H 0.17 -0.69 8.06 -2.91 -0.02 -0.71 16 38 H 0.16 -1.29 4.84 -2.91 -0.01 -1.31 16 39 H 0.11 -1.31 7.96 -2.39 -0.02 -1.32 16 40 H 0.40 -4.57 8.74 -74.06 -0.65 -5.22 16 41 H -0.29 0.55 7.11 99.48 0.71 1.26 16 42 H -0.29 -0.10 7.04 99.48 0.70 0.60 16 43 H 0.16 -1.12 6.41 -2.91 -0.02 -1.14 16 44 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.08 -0.43 6.43 -2.39 -0.02 -0.44 16 Total: 0.00 -21.02 367.94 1.70 -19.33 By element: Atomic # 1 Polarization: -11.62 SS G_CDS: -0.24 Total: -11.86 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 3.40 Total: 10.81 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -2.24 Total: -3.38 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.97 Total: -10.51 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.70 Total: -1.22 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: 2.05 Total: -3.16 kcal Total: -21.02 1.70 -19.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12335834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.422 kcal (2) G-P(sol) polarization free energy of solvation -21.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds