Wall clock time and date at job start Sun Mar 7 2021 02:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00332 * 2 1 3 5 5 H 1.09000 * 109.46497 * 300.00109 * 4 2 1 6 6 C 1.52996 * 109.46969 * 59.99949 * 4 2 1 7 7 C 1.53002 * 109.46972 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46817 * 299.99733 * 7 6 4 9 9 H 1.09001 * 109.47502 * 300.00518 * 8 7 6 10 10 N 1.46500 * 109.47007 * 180.02562 * 8 7 6 11 11 C 1.34773 * 120.00050 * 85.00124 * 10 8 7 12 12 O 1.21584 * 120.00245 * 359.97438 * 11 10 8 13 13 C 1.47585 * 119.99877 * 179.97438 * 11 10 8 14 14 C 1.40195 * 119.83028 * 0.02562 * 13 11 10 15 15 C 1.36233 * 120.37592 * 180.02562 * 14 13 11 16 16 C 1.39876 * 119.95982 * 359.97438 * 15 14 13 17 17 C 1.46254 * 133.84164 * 179.97438 * 16 15 14 18 18 C 1.50704 * 126.48283 * 359.97438 * 17 16 15 19 19 O 1.42894 * 109.47229 * 74.99182 * 18 17 16 20 20 Si 1.86301 * 109.47300 * 194.99625 * 18 17 16 21 21 C 1.34452 * 107.03815 * 180.02562 * 17 16 15 22 22 N 1.36563 * 109.98224 * 0.02562 * 21 17 16 23 23 C 1.37829 * 109.86147 * 359.97438 * 22 21 17 24 24 C 1.38648 * 133.37933 * 180.30348 * 23 22 21 25 25 C 1.53006 * 109.47127 * 60.00361 * 8 7 6 26 26 C 1.52997 * 109.47143 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47142 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47006 * 299.99770 * 1 2 3 30 30 H 1.09004 * 109.47006 * 240.00230 * 2 1 3 31 31 H 1.09004 * 109.47368 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00036 * 3 2 1 33 33 H 1.08996 * 109.47261 * 60.00575 * 3 2 1 34 34 H 1.08996 * 109.47452 * 59.99938 * 6 4 2 35 35 H 1.09000 * 109.47054 * 300.00097 * 6 4 2 36 36 H 1.09002 * 109.47070 * 179.97438 * 7 6 4 37 37 H 1.08996 * 109.47407 * 59.99513 * 7 6 4 38 38 H 0.97002 * 120.00030 * 265.00025 * 10 8 7 39 39 H 1.07999 * 119.81447 * 0.02562 * 14 13 11 40 40 H 1.08007 * 120.02208 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.46643 * 314.99590 * 18 17 16 42 42 H 0.96708 * 114.00107 * 179.97438 * 19 18 17 43 43 H 1.48493 * 110.00044 * 178.67534 * 20 18 17 44 44 H 1.48502 * 109.99865 * 299.99652 * 20 18 17 45 45 H 1.08001 * 125.00908 * 180.02562 * 21 17 16 46 46 H 0.97005 * 125.06448 * 180.02562 * 22 21 17 47 47 H 1.08004 * 120.17007 * 359.91910 * 24 23 22 48 48 H 1.08993 * 109.46955 * 60.00011 * 25 8 7 49 49 H 1.09000 * 109.47050 * 179.97438 * 25 8 7 50 50 H 1.09002 * 109.47153 * 60.00035 * 26 4 2 51 51 H 1.08993 * 109.47194 * 300.00323 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 6 2.0397 -2.8849 2.4986 8 6 3.5697 -2.8849 2.4991 9 1 3.9334 -3.3987 1.6092 10 7 4.0576 -3.5759 3.6952 11 6 4.1864 -4.9175 3.6930 12 8 3.8971 -5.5544 2.6985 13 6 4.6785 -5.6135 4.8977 14 6 5.0105 -4.8757 6.0427 15 6 5.4663 -5.5067 7.1607 16 6 5.6045 -6.8986 7.1699 17 6 6.0523 -7.8656 8.1716 18 6 6.5175 -7.5556 9.5712 19 8 5.3896 -7.2357 10.3881 20 14 7.3947 -9.0398 10.2771 21 6 5.9715 -9.0833 7.6074 22 7 5.5094 -8.9747 6.3270 23 6 5.2737 -7.6507 6.0250 24 6 4.8056 -7.0009 4.8932 25 6 4.0797 -1.4423 2.4992 26 6 3.5701 -0.7218 1.2488 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.8934 -2.6776 0.3591 35 1 0.4401 -2.1638 1.2491 36 1 1.6760 -3.9125 2.4988 37 1 1.6761 -2.3710 3.3884 38 1 4.2881 -3.0679 4.4887 39 1 4.9043 -3.8010 6.0384 40 1 5.7208 -4.9327 8.0395 41 1 7.2011 -6.7069 9.5471 42 1 5.6149 -7.0252 11.3048 43 1 7.8863 -8.7362 11.6450 44 1 6.4733 -10.2038 10.3152 45 1 6.2335 -10.0107 8.0950 46 1 5.3675 -9.7185 5.7207 47 1 4.5453 -7.5669 4.0109 48 1 3.7161 -0.9285 3.3890 49 1 5.1697 -1.4423 2.4999 50 1 3.9338 0.3057 1.2486 51 1 3.9330 -1.2358 0.3588 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589126_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:04:21 Heat of formation + Delta-G solvation = -30.921164 kcal Electronic energy + Delta-G solvation = -29515.581028 eV Core-core repulsion = 25573.556706 eV Total energy + Delta-G solvation = -3942.024322 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.41714 -41.07851 -39.74953 -37.89914 -37.50053 -36.58330 -34.06549 -33.31281 -31.90807 -30.89640 -30.70018 -29.10713 -28.04763 -26.47087 -24.99907 -23.60943 -23.42562 -23.35256 -21.30267 -21.10583 -20.62690 -20.52077 -19.17763 -18.45542 -18.22419 -17.53953 -16.93527 -16.51512 -15.95879 -15.89938 -15.59400 -15.34595 -15.25100 -15.10947 -14.99758 -14.78365 -14.71158 -14.53588 -14.43214 -14.25464 -14.15401 -13.82719 -13.37831 -13.16230 -13.11762 -12.76969 -12.72753 -12.61187 -12.51633 -12.24727 -12.14181 -12.08834 -12.04531 -11.82973 -11.62515 -11.33764 -11.16371 -10.93797 -10.71579 -10.68252 -10.38345 -9.94351 -9.28926 -8.75712 -4.99033 -0.19257 0.45199 1.27292 1.40427 1.55303 1.90675 1.95171 2.09060 2.30958 2.99263 3.48123 3.60626 3.67616 3.69239 3.75894 3.76437 3.88640 3.99097 4.01786 4.12112 4.14577 4.27576 4.30913 4.32619 4.40113 4.42677 4.50344 4.54789 4.56492 4.62562 4.64174 4.67746 4.76963 4.78838 4.80630 4.97221 4.99354 5.03402 5.04163 5.09093 5.14650 5.18945 5.20723 5.27887 5.30827 5.36952 5.39079 5.48764 5.50479 5.53625 5.59700 5.64696 5.65854 6.04229 6.41922 6.51540 6.59729 7.33888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.083 4.083 5 H 0.071 0.929 6 C -0.114 4.114 7 C -0.129 4.129 8 C 0.146 3.854 9 H 0.089 0.911 10 N -0.723 5.723 11 C 0.564 3.436 12 O -0.538 6.538 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.072 4.072 16 C -0.063 4.063 17 C -0.164 4.164 18 C -0.038 4.038 19 O -0.537 6.537 20 Si 0.680 3.320 21 C 0.079 3.921 22 N -0.583 5.583 23 C 0.082 3.918 24 C -0.056 4.056 25 C -0.126 4.126 26 C -0.113 4.113 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.376 0.624 43 H -0.260 1.260 44 H -0.255 1.255 45 H 0.176 0.824 46 H 0.423 0.577 47 H 0.136 0.864 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 1.165 1.934 4.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.152 4.152 7 C -0.168 4.168 8 C 0.042 3.958 9 H 0.107 0.893 10 N -0.375 5.375 11 C 0.352 3.648 12 O -0.416 6.416 13 C -0.126 4.126 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.172 4.172 18 C -0.148 4.148 19 O -0.344 6.344 20 Si 0.581 3.419 21 C -0.049 4.049 22 N -0.186 5.186 23 C -0.024 4.024 24 C -0.077 4.077 25 C -0.164 4.164 26 C -0.151 4.151 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.224 0.776 43 H -0.185 1.185 44 H -0.179 1.179 45 H 0.193 0.807 46 H 0.260 0.740 47 H 0.154 0.846 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.926 -0.111 1.213 3.170 hybrid contribution -0.609 0.538 1.062 1.337 sum 2.318 0.427 2.274 3.275 Atomic orbital electron populations 1.21909 0.95247 1.01911 1.01732 1.21145 0.95789 0.96147 0.98045 1.21907 1.01156 0.95936 1.01762 1.21252 0.95011 0.95712 0.98216 0.91074 1.21614 1.00812 0.94902 0.97830 1.21921 0.94909 1.01288 0.98637 1.21033 0.93970 0.92418 0.88393 0.89293 1.45992 1.67628 1.06786 1.17048 1.18152 0.77269 0.82056 0.87342 1.90786 1.50237 1.66040 1.34565 1.19444 1.05578 0.93090 0.94503 1.20671 1.00800 0.99396 0.92449 1.20160 0.98729 0.92116 0.98094 1.19161 1.01637 0.93288 0.92707 1.19494 1.11662 0.91651 0.94358 1.24014 0.92269 1.08472 0.90046 1.86644 1.32560 1.90584 1.24585 0.95232 0.85107 0.77696 0.83833 1.21740 0.99503 0.98969 0.84728 1.41691 1.57028 1.06674 1.13174 1.18063 1.04228 0.84005 0.96130 1.20075 0.98441 0.93114 0.96085 1.21822 1.00982 0.94192 0.99446 1.21605 0.95349 1.00668 0.97429 0.92792 0.92347 0.92741 0.91210 0.92382 0.92791 0.92735 0.91687 0.91275 0.91388 0.91802 0.76487 0.85688 0.85375 0.90931 0.77597 1.18455 1.17940 0.80662 0.73953 0.84611 0.91331 0.91195 0.91007 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.07 8.84 37.16 0.33 0.40 16 2 C -0.09 0.06 2.51 -90.62 -0.23 -0.17 16 3 C -0.15 0.13 8.84 37.16 0.33 0.45 16 4 C -0.08 0.07 1.78 -90.62 -0.16 -0.09 16 5 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 6 C -0.11 0.00 4.85 -26.73 -0.13 -0.13 16 7 C -0.13 -0.10 5.49 -26.73 -0.15 -0.25 16 8 C 0.15 0.09 2.45 -67.93 -0.17 -0.08 16 9 H 0.09 0.23 7.58 -51.93 -0.39 -0.16 16 10 N -0.72 -0.45 5.03 -54.83 -0.28 -0.73 16 11 C 0.56 1.97 7.72 -12.45 -0.10 1.88 16 12 O -0.54 -3.75 15.97 5.29 0.08 -3.67 16 13 C -0.12 -0.31 5.87 -104.95 -0.62 -0.92 16 14 C -0.11 -0.09 9.46 -39.57 -0.37 -0.46 16 15 C -0.07 -0.11 10.03 -39.69 -0.40 -0.50 16 16 C -0.06 -0.16 6.35 -105.05 -0.67 -0.83 16 17 C -0.16 -0.22 5.61 -102.74 -0.58 -0.80 16 18 C -0.04 0.01 3.05 36.01 0.11 0.12 16 19 O -0.54 -0.69 12.86 -35.23 -0.45 -1.14 16 20 Si 0.68 -1.13 30.79 -169.99 -5.23 -6.37 16 21 C 0.08 -0.03 10.43 -16.78 -0.17 -0.20 16 22 N -0.58 0.17 6.07 -10.68 -0.06 0.11 16 23 C 0.08 0.18 7.26 -84.00 -0.61 -0.43 16 24 C -0.06 -0.15 9.61 -39.03 -0.37 -0.53 16 25 C -0.13 0.17 5.40 -26.71 -0.14 0.02 16 26 C -0.11 0.13 4.85 -26.71 -0.13 0.00 16 27 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.06 -0.02 6.43 -51.93 -0.33 -0.36 16 29 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.06 6.43 -51.93 -0.33 -0.40 16 32 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 33 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.07 0.00 6.43 -51.93 -0.33 -0.33 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.40 -0.73 6.59 -40.82 -0.27 -1.00 16 39 H 0.13 -0.26 6.36 -52.49 -0.33 -0.60 16 40 H 0.13 -0.01 8.06 -52.48 -0.42 -0.43 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 42 H 0.38 -1.05 8.74 45.56 0.40 -0.65 16 43 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 44 H -0.25 -0.22 7.04 56.52 0.40 0.17 16 45 H 0.18 -0.54 6.30 -52.49 -0.33 -0.87 16 46 H 0.42 -1.35 8.96 -40.82 -0.37 -1.71 16 47 H 0.14 0.34 7.62 -52.48 -0.40 -0.06 16 48 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 49 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 50 H 0.07 -0.11 6.43 -51.93 -0.33 -0.45 16 51 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 LS Contribution 396.86 15.07 5.98 5.98 Total: 0.00 -8.38 396.86 -12.33 -20.71 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: -8.14 Total: -12.38 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.23 Total: -2.52 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -0.34 Total: -0.62 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.37 Total: -4.81 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.23 Total: -6.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -8.38 -12.33 -20.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.209 kcal (2) G-P(sol) polarization free energy of solvation -8.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds