Wall clock time and date at job start Sun Mar 7 2021 02:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00332 * 2 1 3 5 5 H 1.09000 * 109.46497 * 300.00109 * 4 2 1 6 6 C 1.52996 * 109.46969 * 59.99949 * 4 2 1 7 7 C 1.53002 * 109.46972 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46817 * 299.99733 * 7 6 4 9 9 H 1.09001 * 109.47502 * 300.00518 * 8 7 6 10 10 N 1.46500 * 109.47007 * 180.02562 * 8 7 6 11 11 C 1.34773 * 120.00050 * 85.00124 * 10 8 7 12 12 O 1.21584 * 120.00245 * 359.97438 * 11 10 8 13 13 C 1.47585 * 119.99877 * 179.97438 * 11 10 8 14 14 C 1.40195 * 119.83028 * 0.02562 * 13 11 10 15 15 C 1.36233 * 120.37592 * 180.02562 * 14 13 11 16 16 C 1.39876 * 119.95982 * 359.97438 * 15 14 13 17 17 C 1.46254 * 133.84164 * 179.97438 * 16 15 14 18 18 C 1.50704 * 126.48283 * 359.97438 * 17 16 15 19 19 O 1.42894 * 109.47229 * 74.99182 * 18 17 16 20 20 Si 1.86301 * 109.47300 * 194.99625 * 18 17 16 21 21 C 1.34452 * 107.03815 * 180.02562 * 17 16 15 22 22 N 1.36563 * 109.98224 * 0.02562 * 21 17 16 23 23 C 1.37829 * 109.86147 * 359.97438 * 22 21 17 24 24 C 1.38648 * 133.37933 * 180.30348 * 23 22 21 25 25 C 1.53006 * 109.47127 * 60.00361 * 8 7 6 26 26 C 1.52997 * 109.47143 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47142 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47006 * 299.99770 * 1 2 3 30 30 H 1.09004 * 109.47006 * 240.00230 * 2 1 3 31 31 H 1.09004 * 109.47368 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47372 * 300.00036 * 3 2 1 33 33 H 1.08996 * 109.47261 * 60.00575 * 3 2 1 34 34 H 1.08996 * 109.47452 * 59.99938 * 6 4 2 35 35 H 1.09000 * 109.47054 * 300.00097 * 6 4 2 36 36 H 1.09002 * 109.47070 * 179.97438 * 7 6 4 37 37 H 1.08996 * 109.47407 * 59.99513 * 7 6 4 38 38 H 0.97002 * 120.00030 * 265.00025 * 10 8 7 39 39 H 1.07999 * 119.81447 * 0.02562 * 14 13 11 40 40 H 1.08007 * 120.02208 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.46643 * 314.99590 * 18 17 16 42 42 H 0.96708 * 114.00107 * 179.97438 * 19 18 17 43 43 H 1.48493 * 110.00044 * 178.67534 * 20 18 17 44 44 H 1.48502 * 109.99865 * 299.99652 * 20 18 17 45 45 H 1.08001 * 125.00908 * 180.02562 * 21 17 16 46 46 H 0.97005 * 125.06448 * 180.02562 * 22 21 17 47 47 H 1.08004 * 120.17007 * 359.91910 * 24 23 22 48 48 H 1.08993 * 109.46955 * 60.00011 * 25 8 7 49 49 H 1.09000 * 109.47050 * 179.97438 * 25 8 7 50 50 H 1.09002 * 109.47153 * 60.00035 * 26 4 2 51 51 H 1.08993 * 109.47194 * 300.00323 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 6 2.0397 -2.8849 2.4986 8 6 3.5697 -2.8849 2.4991 9 1 3.9334 -3.3987 1.6092 10 7 4.0576 -3.5759 3.6952 11 6 4.1864 -4.9175 3.6930 12 8 3.8971 -5.5544 2.6985 13 6 4.6785 -5.6135 4.8977 14 6 5.0105 -4.8757 6.0427 15 6 5.4663 -5.5067 7.1607 16 6 5.6045 -6.8986 7.1699 17 6 6.0523 -7.8656 8.1716 18 6 6.5175 -7.5556 9.5712 19 8 5.3896 -7.2357 10.3881 20 14 7.3947 -9.0398 10.2771 21 6 5.9715 -9.0833 7.6074 22 7 5.5094 -8.9747 6.3270 23 6 5.2737 -7.6507 6.0250 24 6 4.8056 -7.0009 4.8932 25 6 4.0797 -1.4423 2.4992 26 6 3.5701 -0.7218 1.2488 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.8934 -2.6776 0.3591 35 1 0.4401 -2.1638 1.2491 36 1 1.6760 -3.9125 2.4988 37 1 1.6761 -2.3710 3.3884 38 1 4.2881 -3.0679 4.4887 39 1 4.9043 -3.8010 6.0384 40 1 5.7208 -4.9327 8.0395 41 1 7.2011 -6.7069 9.5471 42 1 5.6149 -7.0252 11.3048 43 1 7.8863 -8.7362 11.6450 44 1 6.4733 -10.2038 10.3152 45 1 6.2335 -10.0107 8.0950 46 1 5.3675 -9.7185 5.7207 47 1 4.5453 -7.5669 4.0109 48 1 3.7161 -0.9285 3.3890 49 1 5.1697 -1.4423 2.4999 50 1 3.9338 0.3057 1.2486 51 1 3.9330 -1.2358 0.3588 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:04:20 Heat of formation + Delta-G solvation = -27.730075 kcal Electronic energy + Delta-G solvation = -29515.442652 eV Core-core repulsion = 25573.556706 eV Total energy + Delta-G solvation = -3941.885946 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.46126 -41.22567 -39.82570 -37.92620 -37.55140 -36.69978 -34.16762 -33.36126 -31.90667 -30.96926 -30.75988 -29.14556 -28.00279 -26.45466 -25.07787 -23.67501 -23.43950 -23.39254 -21.46246 -21.14230 -20.62679 -20.53074 -19.23386 -18.44226 -18.28016 -17.60883 -17.07858 -16.55615 -16.13600 -15.89723 -15.66412 -15.39323 -15.23002 -15.12408 -15.02144 -14.85099 -14.77955 -14.56669 -14.49166 -14.31551 -14.17509 -13.84287 -13.37413 -13.16823 -13.07333 -12.79183 -12.71192 -12.61950 -12.59028 -12.27845 -12.18838 -12.08597 -12.03184 -11.86631 -11.61633 -11.32063 -11.26583 -10.97565 -10.86716 -10.77491 -10.32999 -10.10641 -9.36869 -8.80284 -4.85031 -0.32542 0.37350 1.35108 1.39396 1.65623 1.87618 1.91888 2.01422 2.25262 2.86320 3.55827 3.56438 3.66849 3.70314 3.72343 3.78533 3.85549 4.02276 4.04951 4.10540 4.13270 4.28369 4.30485 4.33497 4.37818 4.39172 4.48993 4.54129 4.55708 4.58855 4.66362 4.68524 4.78238 4.81183 4.83523 4.97486 5.02265 5.02516 5.04590 5.09717 5.14767 5.19828 5.20984 5.22429 5.30192 5.37480 5.38008 5.41115 5.47114 5.54366 5.56097 5.60829 5.64098 5.97588 6.48783 6.51294 6.70926 7.15610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.076 0.924 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.064 0.936 10 N -0.708 5.708 11 C 0.561 3.439 12 O -0.583 6.583 13 C -0.136 4.136 14 C -0.107 4.107 15 C -0.081 4.081 16 C -0.081 4.081 17 C -0.189 4.189 18 C -0.050 4.050 19 O -0.562 6.562 20 Si 0.769 3.231 21 C 0.088 3.912 22 N -0.577 5.577 23 C 0.067 3.933 24 C -0.068 4.068 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.414 0.586 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.391 0.609 43 H -0.290 1.290 44 H -0.287 1.287 45 H 0.203 0.797 46 H 0.434 0.566 47 H 0.128 0.872 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 2.120 3.150 5.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.094 0.906 6 C -0.149 4.149 7 C -0.162 4.162 8 C 0.042 3.958 9 H 0.082 0.918 10 N -0.360 5.360 11 C 0.350 3.650 12 O -0.464 6.464 13 C -0.140 4.140 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.087 4.087 17 C -0.196 4.196 18 C -0.159 4.159 19 O -0.372 6.372 20 Si 0.673 3.327 21 C -0.042 4.042 22 N -0.181 5.181 23 C -0.040 4.040 24 C -0.089 4.089 25 C -0.156 4.156 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.241 0.759 43 H -0.217 1.217 44 H -0.214 1.214 45 H 0.220 0.780 46 H 0.275 0.725 47 H 0.145 0.855 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.726 0.886 2.429 4.536 hybrid contribution -0.883 0.214 0.714 1.156 sum 2.844 1.101 3.144 4.379 Atomic orbital electron populations 1.21908 0.95409 1.01732 1.01760 1.21130 0.95657 0.96420 0.97859 1.21892 1.01452 0.95492 1.01755 1.21189 0.95287 0.94740 0.98302 0.90573 1.21579 1.00801 0.95520 0.96955 1.21855 0.95008 0.99903 0.99469 1.21026 0.93832 0.93462 0.87435 0.91767 1.45899 1.66443 1.05992 1.17626 1.18390 0.76778 0.82758 0.87083 1.90757 1.52440 1.67086 1.36159 1.19490 1.06517 0.93210 0.94795 1.20910 0.99649 1.00686 0.91390 1.20413 0.98734 0.92057 0.98777 1.19563 1.01752 0.94145 0.93206 1.19801 1.12789 0.91950 0.95101 1.24316 0.92086 1.10123 0.89371 1.86594 1.33768 1.90887 1.25917 0.94209 0.82790 0.74504 0.81190 1.22200 0.97953 0.99622 0.84383 1.41765 1.56408 1.06347 1.13550 1.18132 1.04757 0.85109 0.95990 1.20124 0.99059 0.93560 0.96206 1.21780 1.01311 0.92452 1.00070 1.21605 0.94961 1.01169 0.97198 0.92913 0.92648 0.92546 0.91842 0.91896 0.93044 0.92498 0.92771 0.91245 0.94030 0.90750 0.74792 0.82848 0.83907 0.89731 0.75914 1.21660 1.21438 0.78011 0.72542 0.85456 0.89718 0.90581 0.89902 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.12 8.84 71.98 0.64 0.75 16 2 C -0.09 0.12 2.51 -10.79 -0.03 0.09 16 3 C -0.15 0.34 8.84 71.98 0.64 0.97 16 4 C -0.08 0.15 1.78 -10.79 -0.02 0.13 16 5 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 6 C -0.11 -0.10 4.85 30.59 0.15 0.05 16 7 C -0.12 -0.32 5.49 30.59 0.17 -0.15 16 8 C 0.15 0.29 2.45 44.99 0.11 0.40 16 9 H 0.06 0.47 7.58 -2.39 -0.02 0.46 16 10 N -0.71 -1.21 5.03 -445.65 -2.24 -3.45 16 11 C 0.56 4.85 7.72 86.71 0.67 5.52 16 12 O -0.58 -9.80 15.97 -3.98 -0.06 -9.87 16 13 C -0.14 -0.85 5.87 -20.07 -0.12 -0.97 16 14 C -0.11 -0.15 9.46 22.28 0.21 0.06 16 15 C -0.08 -0.23 10.03 22.20 0.22 0.00 16 16 C -0.08 -0.44 6.35 -20.14 -0.13 -0.57 16 17 C -0.19 -0.46 5.61 -18.64 -0.10 -0.57 16 18 C -0.05 0.05 3.05 71.24 0.22 0.26 16 19 O -0.56 -1.30 12.86 -148.98 -1.92 -3.22 16 20 Si 0.77 -3.19 30.79 68.60 2.11 -1.07 16 21 C 0.09 -0.10 10.43 83.09 0.87 0.76 16 22 N -0.58 0.18 6.07 -187.71 -1.14 -0.96 16 23 C 0.07 0.35 7.26 38.96 0.28 0.64 16 24 C -0.07 -0.50 9.61 22.63 0.22 -0.28 16 25 C -0.12 0.41 5.40 30.61 0.17 0.57 16 26 C -0.11 0.32 4.85 30.61 0.15 0.47 16 27 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 28 H 0.05 -0.01 6.43 -2.39 -0.02 -0.03 16 29 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.06 -0.20 6.43 -2.39 -0.02 -0.21 16 32 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.07 0.06 6.43 -2.39 -0.02 0.04 16 36 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.41 -1.86 6.59 -92.71 -0.61 -2.47 16 39 H 0.15 -0.86 6.36 -2.91 -0.02 -0.88 16 40 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.08 -0.33 7.96 -2.39 -0.02 -0.34 16 42 H 0.39 -2.27 8.74 -74.05 -0.65 -2.92 16 43 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 44 H -0.29 -0.35 7.04 99.48 0.70 0.35 16 45 H 0.20 -1.52 6.30 -2.91 -0.02 -1.53 16 46 H 0.43 -2.63 8.96 -92.70 -0.83 -3.46 16 47 H 0.13 1.01 7.62 -2.91 -0.02 0.99 16 48 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.08 -0.38 6.43 -2.39 -0.02 -0.39 16 51 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -21.50 396.86 -0.04 -21.54 By element: Atomic # 1 Polarization: -10.02 SS G_CDS: -1.10 Total: -11.12 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.30 Total: 8.15 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -3.38 Total: -4.41 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.98 Total: -13.09 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.11 Total: -1.07 kcal Total: -21.50 -0.04 -21.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.192 kcal (2) G-P(sol) polarization free energy of solvation -21.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds