Wall clock time and date at job start Sun Mar 7 2021 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 5 5 H 1.09000 * 109.47486 * 300.00335 * 4 2 1 6 6 C 1.53006 * 109.46623 * 60.00164 * 4 2 1 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 10 10 N 1.46500 * 109.47204 * 180.02562 * 8 7 6 11 11 C 1.34773 * 119.99955 * 85.00142 * 10 8 7 12 12 O 1.21568 * 120.00193 * 359.97438 * 11 10 8 13 13 C 1.47706 * 120.00032 * 180.02562 * 11 10 8 14 14 C 1.39800 * 120.15321 * 179.72091 * 13 11 10 15 15 F 1.35097 * 120.08831 * 359.97438 * 14 13 11 16 16 C 1.38314 * 119.82709 * 179.78456 * 14 13 11 17 17 C 1.38186 * 120.14792 * 0.47390 * 16 14 13 18 18 C 1.50702 * 119.84405 * 179.76038 * 17 16 14 19 19 O 1.42896 * 109.47015 * 255.01733 * 18 17 16 20 20 Si 1.86292 * 109.47176 * 15.02109 * 18 17 16 21 21 C 1.38662 * 120.31057 * 359.77927 * 17 16 14 22 22 F 1.35106 * 119.91214 * 179.97438 * 21 17 16 23 23 C 1.38061 * 120.16592 * 359.97438 * 21 17 16 24 24 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 25 25 C 1.52997 * 109.47269 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 28 28 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 29 29 H 1.09000 * 109.47140 * 240.00393 * 2 1 3 30 30 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 32 32 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00075 * 6 4 2 34 34 H 1.09000 * 109.47050 * 59.99904 * 6 4 2 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 36 36 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 37 37 H 0.97001 * 119.99882 * 265.00024 * 10 8 7 38 38 H 1.08002 * 119.92847 * 180.22644 * 16 14 13 39 39 H 1.08998 * 109.47045 * 135.02203 * 18 17 16 40 40 H 0.96704 * 113.99907 * 60.00260 * 19 18 17 41 41 H 1.48497 * 110.00285 * 180.02562 * 20 18 17 42 42 H 1.48507 * 110.00128 * 301.31858 * 20 18 17 43 43 H 1.08002 * 120.06987 * 180.02562 * 23 21 17 44 44 H 1.08992 * 109.47534 * 180.02562 * 24 8 7 45 45 H 1.08996 * 109.47134 * 59.99508 * 24 8 7 46 46 H 1.09000 * 109.47140 * 300.00547 * 25 4 2 47 47 H 1.09001 * 109.47230 * 59.99691 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4981 8 6 3.5705 -2.8851 2.4975 9 1 3.9335 -3.3988 1.6073 10 7 4.0593 -3.5764 3.6931 11 6 4.1880 -4.9180 3.6905 12 8 3.8981 -5.5545 2.6962 13 6 4.6803 -5.6151 4.8961 14 6 4.8095 -7.0071 4.8988 15 9 4.4839 -7.7197 3.7982 16 6 5.2754 -7.6525 6.0300 17 6 5.6033 -6.9254 7.1584 18 6 6.1051 -7.6362 8.3889 19 8 5.0700 -7.6726 9.3733 20 14 6.5995 -9.3761 7.9428 21 6 5.4724 -5.5450 7.1640 22 9 5.7948 -4.8422 8.2719 23 6 5.0134 -4.8871 6.0404 24 6 4.0805 -1.4427 2.4976 25 6 3.5700 -0.7206 1.2496 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.4400 -2.1637 1.2491 34 1 1.8933 -2.6775 0.3591 35 1 1.6775 -2.3715 3.3883 36 1 1.6776 -3.9130 2.4978 37 1 4.2903 -3.0686 4.4866 38 1 5.3794 -8.7275 6.0326 39 1 6.9684 -7.1044 8.7890 40 1 4.2692 -8.1318 9.0852 41 1 7.0957 -10.0879 9.1479 42 1 5.4391 -10.1019 7.3666 43 1 4.9125 -3.8118 6.0463 44 1 5.1704 -1.4426 2.4968 45 1 3.7174 -0.9290 3.3877 46 1 3.9337 -1.2341 0.3595 47 1 3.9330 0.3072 1.2497 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12360598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:00 Heat of formation + Delta-G solvation = -143.798473 kcal Electronic energy + Delta-G solvation = -29981.694980 eV Core-core repulsion = 25573.283790 eV Total energy + Delta-G solvation = -4408.411190 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12564 -50.10449 -41.56686 -40.37271 -39.56947 -37.79336 -36.75642 -34.49425 -33.12341 -31.92287 -31.39407 -29.65533 -28.01017 -27.66517 -24.54039 -24.41749 -23.48102 -23.24047 -21.78029 -21.28293 -20.62218 -19.66790 -18.86261 -18.66516 -17.97450 -17.36403 -17.22665 -17.01826 -16.59878 -16.35487 -16.21575 -15.98209 -15.85841 -15.62673 -15.37643 -15.15463 -15.14973 -14.76697 -14.54834 -14.38969 -14.22522 -14.13390 -13.82959 -13.38914 -13.20765 -13.08047 -13.01017 -12.79887 -12.66888 -12.42721 -12.29399 -12.10042 -12.03917 -11.93793 -11.62600 -11.37708 -11.31323 -11.01511 -10.92209 -10.78573 -10.60918 -10.16403 -9.83582 -4.96705 -0.82656 -0.32429 1.15082 1.37698 1.53393 1.84276 1.90599 2.22880 2.77391 2.83323 3.09438 3.23330 3.42601 3.49609 3.64604 3.69529 3.75348 3.80800 4.01693 4.10423 4.16308 4.29050 4.30926 4.32302 4.37309 4.37996 4.47525 4.53666 4.56184 4.65405 4.67413 4.67699 4.71868 4.79977 4.82904 5.00111 5.01908 5.03346 5.08754 5.13980 5.19245 5.20251 5.28818 5.32659 5.36679 5.37812 5.46251 5.55493 5.63449 6.31814 6.37686 6.99366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.076 0.924 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.067 0.933 10 N -0.704 5.704 11 C 0.556 3.444 12 O -0.561 6.561 13 C -0.147 4.147 14 C 0.139 3.861 15 F -0.125 7.125 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.087 4.087 19 O -0.540 6.540 20 Si 0.773 3.227 21 C 0.105 3.895 22 F -0.127 7.127 23 C -0.077 4.077 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.415 0.585 38 H 0.171 0.829 39 H 0.133 0.867 40 H 0.390 0.610 41 H -0.294 1.294 42 H -0.271 1.271 43 H 0.181 0.819 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 4.076 1.338 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.095 0.905 6 C -0.149 4.149 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.085 0.915 10 N -0.356 5.356 11 C 0.343 3.657 12 O -0.441 6.441 13 C -0.152 4.152 14 C 0.118 3.882 15 F -0.103 7.103 16 C -0.148 4.148 17 C -0.092 4.092 18 C -0.195 4.195 19 O -0.348 6.348 20 Si 0.676 3.324 21 C 0.085 3.915 22 F -0.105 7.105 23 C -0.096 4.096 24 C -0.156 4.156 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.253 0.747 38 H 0.188 0.812 39 H 0.151 0.849 40 H 0.240 0.760 41 H -0.221 1.221 42 H -0.197 1.197 43 H 0.198 0.802 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.275 3.150 1.097 4.038 hybrid contribution -1.235 0.083 0.548 1.354 sum 1.040 3.233 1.645 3.774 Atomic orbital electron populations 1.21909 0.95443 1.01740 1.01745 1.21128 0.95627 0.96399 0.97913 1.21897 1.01459 0.95531 1.01737 1.21194 0.95317 0.94772 0.98273 0.90530 1.21580 1.00833 0.95478 0.97018 1.21859 0.94857 1.00016 0.99545 1.21066 0.93915 0.93490 0.87256 0.91463 1.45884 1.66171 1.05620 1.17915 1.18102 0.77754 0.83110 0.86691 1.90867 1.51038 1.66821 1.35327 1.19842 1.07060 0.92452 0.95797 1.17810 0.97910 0.88511 0.83946 1.91601 1.89477 1.77724 1.51512 1.21101 1.00825 1.02372 0.90544 1.20447 0.99419 0.92620 0.96716 1.25305 0.94038 1.12461 0.87701 1.86655 1.28044 1.79636 1.40466 0.93827 0.84948 0.71299 0.82332 1.17340 1.01249 0.89115 0.83806 1.91576 1.90080 1.78326 1.50552 1.21341 0.96536 1.02344 0.89372 1.21769 1.01427 0.92324 1.00127 1.21593 0.94926 1.01193 0.97288 0.92617 0.92538 0.92985 0.91865 0.91875 0.93106 0.92504 0.91243 0.92772 0.90548 0.93876 0.74664 0.81187 0.84905 0.76034 1.22098 1.19747 0.80219 0.90392 0.89595 0.92338 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 8.84 71.98 0.64 0.88 16 2 C -0.09 0.21 2.51 -10.79 -0.03 0.18 16 3 C -0.15 0.46 8.84 71.98 0.64 1.10 16 4 C -0.08 0.26 1.78 -10.79 -0.02 0.24 16 5 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 6 C -0.11 0.08 4.85 30.60 0.15 0.23 16 7 C -0.12 -0.02 5.49 30.59 0.17 0.15 16 8 C 0.15 -0.12 2.45 44.99 0.11 -0.01 16 9 H 0.07 0.32 7.58 -2.39 -0.02 0.30 16 10 N -0.70 1.40 5.03 -445.56 -2.24 -0.84 16 11 C 0.56 2.75 7.73 86.75 0.67 3.42 16 12 O -0.56 -8.00 15.00 -3.93 -0.06 -8.06 16 13 C -0.15 -0.17 5.88 -20.06 -0.12 -0.29 16 14 C 0.14 0.43 7.28 22.67 0.17 0.59 16 15 F -0.12 -1.16 15.55 44.97 0.70 -0.46 16 16 C -0.13 0.28 8.62 22.28 0.19 0.47 16 17 C -0.09 0.26 5.27 -19.77 -0.10 0.15 16 18 C -0.09 0.29 2.44 71.24 0.17 0.47 16 19 O -0.54 0.03 12.88 -148.98 -1.92 -1.89 16 20 Si 0.77 -3.75 30.24 68.60 2.07 -1.68 16 21 C 0.10 -0.22 7.23 22.33 0.16 -0.06 16 22 F -0.13 -0.06 16.73 44.97 0.75 0.69 16 23 C -0.08 0.33 9.51 22.57 0.21 0.54 16 24 C -0.12 0.69 5.39 30.58 0.16 0.85 16 25 C -0.11 0.51 4.85 30.58 0.15 0.66 16 26 H 0.05 -0.06 6.43 -2.39 -0.02 -0.08 16 27 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 -0.26 6.43 -2.39 -0.02 -0.27 16 31 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 -0.04 6.43 -2.39 -0.02 -0.06 16 34 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.41 -3.67 6.64 -92.71 -0.62 -4.29 16 38 H 0.17 -0.88 4.83 -2.91 -0.01 -0.90 16 39 H 0.13 -0.60 7.89 -2.39 -0.02 -0.62 16 40 H 0.39 -2.46 8.70 -74.05 -0.64 -3.10 16 41 H -0.29 -0.82 7.11 99.48 0.71 -0.11 16 42 H -0.27 0.55 6.68 99.48 0.66 1.22 16 43 H 0.18 -1.97 6.41 -2.91 -0.02 -1.99 16 44 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.08 -0.49 6.43 -2.39 -0.02 -0.51 16 Total: 0.00 -17.71 373.64 2.38 -15.34 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: -0.25 Total: -12.70 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 3.32 Total: 9.60 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -2.24 Total: -0.84 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.98 Total: -9.95 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 1.45 Total: 0.23 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.07 Total: -1.68 kcal Total: -17.71 2.38 -15.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12360598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.463 kcal (2) G-P(sol) polarization free energy of solvation -17.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds