Wall clock time and date at job start Sun Mar 7 2021 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35650 * 117.00165 * 2 1 4 4 C 1.40145 * 120.14938 * 180.02562 * 3 2 1 5 5 C 1.47538 * 120.18909 * 359.75074 * 4 3 2 6 6 O 1.21588 * 120.00157 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99895 * 179.97438 * 5 4 3 8 8 C 1.46495 * 119.99995 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47203 * 35.00627 * 8 7 5 10 10 C 1.53007 * 109.46911 * 154.99906 * 8 7 5 11 11 C 1.53005 * 109.47111 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47020 * 300.00392 * 11 10 8 13 13 H 1.09001 * 109.47227 * 299.99691 * 12 11 10 14 14 C 1.53005 * 109.47020 * 179.97438 * 12 11 10 15 15 C 1.52994 * 109.47086 * 59.99820 * 14 12 11 16 16 C 1.52999 * 109.47020 * 179.97438 * 14 12 11 17 17 C 1.53003 * 109.47180 * 59.99979 * 12 11 10 18 18 C 1.53000 * 109.47436 * 274.99973 * 8 7 5 19 19 C 1.39707 * 119.61775 * 180.02562 * 4 3 2 20 20 C 1.37787 * 119.90550 * 0.04426 * 19 4 3 21 21 C 1.50695 * 119.84848 * 179.97438 * 20 19 4 22 22 O 1.42903 * 109.47170 * 65.00157 * 21 20 19 23 23 Si 1.86303 * 109.47224 * 184.99963 * 21 20 19 24 24 C 1.38549 * 120.30350 * 359.93287 * 20 19 4 25 25 C 1.38054 * 120.38764 * 0.04676 * 24 20 19 26 26 H 1.08998 * 109.47402 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46904 * 300.00213 * 1 2 3 28 28 H 1.09001 * 109.47531 * 59.99291 * 1 2 3 29 29 H 0.96998 * 120.00125 * 359.97438 * 7 5 4 30 30 H 1.08993 * 109.47131 * 300.00233 * 10 8 7 31 31 H 1.09001 * 109.47008 * 60.00551 * 10 8 7 32 32 H 1.09001 * 109.46868 * 60.00302 * 11 10 8 33 33 H 1.08992 * 109.46948 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46868 * 299.99910 * 14 12 11 35 35 H 1.09008 * 109.47142 * 59.99878 * 15 14 12 36 36 H 1.08994 * 109.47281 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47555 * 300.00301 * 15 14 12 38 38 H 1.09002 * 109.47070 * 179.97438 * 16 14 12 39 39 H 1.09001 * 109.47227 * 299.99691 * 16 14 12 40 40 H 1.09001 * 109.47270 * 60.00056 * 16 14 12 41 41 H 1.08991 * 109.47191 * 60.00261 * 17 12 11 42 42 H 1.09002 * 109.46862 * 180.02562 * 17 12 11 43 43 H 1.08991 * 109.47036 * 300.00358 * 18 8 7 44 44 H 1.09001 * 109.46897 * 60.00275 * 18 8 7 45 45 H 1.07993 * 120.04459 * 179.97438 * 19 4 3 46 46 H 1.08998 * 109.47465 * 304.99938 * 21 20 19 47 47 H 0.96699 * 113.99961 * 180.02562 * 22 21 20 48 48 H 1.48507 * 110.00138 * 178.67957 * 23 21 20 49 49 H 1.48494 * 110.00111 * 299.99755 * 23 21 20 50 50 H 1.08003 * 119.80707 * 180.02562 * 24 20 19 51 51 H 1.07999 * 119.95662 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4442 1.2856 -0.0005 5 6 4.2550 0.0530 0.0044 6 8 3.7094 -1.0336 0.0095 7 7 5.6005 0.1315 0.0034 8 6 6.4056 -1.0924 0.0089 9 1 5.9018 -1.8614 -0.5767 10 6 7.7778 -0.8029 -0.6029 11 6 8.6185 -2.0813 -0.5978 12 6 8.7945 -2.5701 0.8413 13 1 9.2986 -1.8015 1.4271 14 6 9.6346 -3.8489 0.8464 15 6 11.0068 -3.5600 0.2345 16 6 9.8111 -4.3374 2.2855 17 6 7.4223 -2.8597 1.4530 18 6 6.5816 -1.5807 1.4481 19 6 4.0669 2.5362 0.0000 20 6 3.3039 3.6835 0.0020 21 6 3.9769 5.0318 0.0032 22 8 4.6982 5.2053 -1.2182 23 14 2.6889 6.3688 0.1589 24 6 1.9207 3.6033 0.0021 25 6 1.2926 2.3739 0.0011 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 6.0358 0.9983 -0.0010 30 1 7.6524 -0.4551 -1.6282 31 1 8.2817 -0.0339 -0.0174 32 1 8.1144 -2.8500 -1.1836 33 1 9.5962 -1.8749 -1.0331 34 1 9.1301 -4.6174 0.2607 35 1 11.5113 -2.7914 0.8202 36 1 11.6055 -4.4708 0.2385 37 1 10.8815 -3.2116 -0.7908 38 1 10.4093 -5.2486 2.2891 39 1 10.3159 -3.5687 2.8708 40 1 8.8337 -4.5431 2.7219 41 1 6.9183 -3.6283 0.8673 42 1 7.5477 -3.2075 2.4784 43 1 7.0855 -0.8117 2.0336 44 1 5.6040 -1.7870 1.8839 45 1 5.1447 2.6035 0.0000 46 1 4.6672 5.0927 0.8445 47 1 5.1579 6.0533 -1.2865 48 1 3.3421 7.7020 0.1933 49 1 1.7415 6.2968 -0.9824 50 1 1.3305 4.5077 0.0032 51 1 0.2139 2.3195 0.0016 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12496546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:04 Heat of formation + Delta-G solvation = -92.276936 kcal Electronic energy + Delta-G solvation = -29592.140784 eV Core-core repulsion = 25650.651876 eV Total energy + Delta-G solvation = -3941.488908 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82776 -40.71952 -39.50186 -39.12410 -37.31088 -36.64632 -34.28235 -32.60456 -31.94407 -31.91639 -29.45393 -28.47089 -28.00445 -26.11649 -25.41575 -23.77725 -23.47543 -22.36517 -21.46346 -21.06258 -20.58570 -19.45712 -18.55227 -18.15534 -17.82748 -17.02517 -16.84523 -16.47787 -16.11927 -15.91614 -15.75610 -15.62648 -15.28729 -15.14297 -14.80329 -14.67268 -14.52610 -14.34584 -14.18310 -14.01822 -13.84375 -13.52234 -13.37694 -13.06789 -12.99937 -12.76935 -12.66163 -12.49719 -12.38888 -12.27946 -12.09724 -12.04299 -12.01843 -11.74377 -11.61910 -11.32447 -11.19622 -10.96419 -10.81702 -10.44847 -10.26680 -9.99666 -9.29528 -4.90368 -0.27407 0.20621 1.32016 1.61812 1.76445 1.97031 2.09122 2.26010 2.64867 3.37203 3.51950 3.62366 3.67779 3.70083 3.77923 3.83582 4.02122 4.04249 4.11995 4.15681 4.27718 4.30145 4.32461 4.33942 4.34944 4.38252 4.51437 4.53736 4.54274 4.65358 4.66508 4.68287 4.72260 4.80371 4.83361 4.90927 5.00965 5.02133 5.03982 5.08855 5.09124 5.15089 5.18895 5.20418 5.28898 5.29615 5.37170 5.38332 5.52276 5.54985 5.55432 5.63302 6.29225 6.52649 6.63053 7.22230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.170 3.830 4 C -0.197 4.197 5 C 0.557 3.443 6 O -0.564 6.564 7 N -0.714 5.714 8 C 0.148 3.852 9 H 0.060 0.940 10 C -0.118 4.118 11 C -0.111 4.111 12 C -0.077 4.077 13 H 0.077 0.923 14 C -0.092 4.092 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.017 4.017 20 C -0.129 4.129 21 C -0.076 4.076 22 O -0.557 6.557 23 Si 0.758 3.242 24 C -0.046 4.046 25 C -0.212 4.212 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.410 0.590 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.152 0.848 46 H 0.102 0.898 47 H 0.396 0.604 48 H -0.287 1.287 49 H -0.297 1.297 50 H 0.154 0.846 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 5.574 2.925 6.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.122 3.878 4 C -0.201 4.201 5 C 0.345 3.655 6 O -0.443 6.443 7 N -0.367 5.367 8 C 0.044 3.956 9 H 0.078 0.922 10 C -0.156 4.156 11 C -0.149 4.149 12 C -0.095 4.095 13 H 0.096 0.904 14 C -0.110 4.110 15 C -0.206 4.206 16 C -0.208 4.208 17 C -0.148 4.148 18 C -0.160 4.160 19 C -0.035 4.035 20 C -0.129 4.129 21 C -0.185 4.185 22 O -0.368 6.368 23 Si 0.663 3.337 24 C -0.064 4.064 25 C -0.230 4.230 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.170 0.830 46 H 0.120 0.880 47 H 0.246 0.754 48 H -0.214 1.214 49 H -0.224 1.224 50 H 0.171 0.829 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.480 4.695 2.460 5.323 hybrid contribution 0.632 0.524 -0.833 1.170 sum 1.112 5.219 1.627 5.579 Atomic orbital electron populations 1.23450 0.76547 1.05474 1.02855 1.86335 1.23197 1.26307 1.86582 1.19403 0.91363 0.85533 0.91535 1.19441 0.91208 0.94057 1.15410 1.18289 0.82744 0.88561 0.75872 1.90801 1.72498 1.30275 1.50764 1.45911 1.05086 1.10545 1.75127 1.20980 0.91611 0.86231 0.96754 0.92177 1.21768 0.93087 0.99320 1.01431 1.21595 1.00283 0.96353 0.96662 1.21193 0.94750 0.97283 0.96272 0.90426 1.21125 0.96208 0.96955 0.96757 1.21894 0.96077 1.01583 1.01048 1.21905 1.01657 1.01051 0.96161 1.21586 0.95277 0.96477 1.01460 1.21842 0.99463 0.98514 0.96177 1.21119 1.00756 0.89167 0.92486 1.19295 0.93402 0.94338 1.05906 1.24869 1.03357 1.00665 0.89628 1.86551 1.68661 1.42884 1.38665 0.94234 0.78209 0.74224 0.86994 1.21268 0.93839 0.97993 0.93289 1.21441 1.01778 0.90787 1.09033 0.87403 0.90554 0.91132 0.75230 0.91034 0.89677 0.92514 0.89920 0.91940 0.92423 0.92996 0.92023 0.92888 0.92444 0.92610 0.92945 0.91051 0.90607 0.94058 0.83040 0.88019 0.75359 1.21436 1.22450 0.82926 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.30 8.57 -68.73 -0.59 -3.88 16 3 C 0.17 1.31 6.70 22.84 0.15 1.47 16 4 C -0.20 -1.50 5.89 -20.01 -0.12 -1.61 16 5 C 0.56 6.17 7.73 86.70 0.67 6.84 16 6 O -0.56 -11.10 14.82 16.92 0.25 -10.85 16 7 N -0.71 -2.68 5.03 -445.70 -2.24 -4.92 16 8 C 0.15 0.54 2.45 44.99 0.11 0.65 16 9 H 0.06 0.58 7.58 -2.39 -0.02 0.56 16 10 C -0.12 0.22 5.39 30.60 0.16 0.38 16 11 C -0.11 0.19 4.85 30.60 0.15 0.34 16 12 C -0.08 0.10 1.78 -10.79 -0.02 0.08 16 13 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 14 C -0.09 0.07 2.51 -10.79 -0.03 0.05 16 15 C -0.15 0.27 8.84 71.98 0.64 0.91 16 16 C -0.15 0.09 8.84 71.98 0.64 0.73 16 17 C -0.11 -0.18 4.85 30.61 0.15 -0.03 16 18 C -0.12 -0.41 5.50 30.61 0.17 -0.25 16 19 C -0.02 -0.03 9.16 22.52 0.21 0.18 16 20 C -0.13 -0.02 5.38 -19.90 -0.11 -0.13 16 21 C -0.08 0.29 2.78 71.23 0.20 0.49 16 22 O -0.56 0.65 12.81 -148.98 -1.91 -1.26 16 23 Si 0.76 -3.47 29.84 68.60 2.05 -1.42 16 24 C -0.05 0.03 8.65 22.30 0.19 0.22 16 25 C -0.21 -0.27 9.03 22.34 0.20 -0.07 16 26 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16 28 H 0.07 -0.19 7.66 -2.39 -0.02 -0.21 16 29 H 0.41 -0.96 6.63 -92.71 -0.61 -1.58 16 30 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.08 -0.29 6.43 -2.39 -0.02 -0.30 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.06 -0.15 6.43 -2.38 -0.02 -0.17 16 38 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.05 0.00 6.43 -2.39 -0.02 -0.02 16 41 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.07 0.08 6.43 -2.39 -0.02 0.07 16 43 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.04 0.37 8.14 -2.39 -0.02 0.36 16 45 H 0.15 -0.50 6.40 -2.91 -0.02 -0.52 16 46 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 47 H 0.40 -3.53 8.74 -74.06 -0.65 -4.17 16 48 H -0.29 0.01 7.11 99.48 0.71 0.71 16 49 H -0.30 -0.75 7.04 99.48 0.70 -0.05 16 50 H 0.15 -0.80 4.84 -2.91 -0.01 -0.81 16 51 H 0.16 -0.68 6.30 -2.91 -0.02 -0.70 16 Total: 0.00 -21.68 390.69 1.74 -19.94 By element: Atomic # 1 Polarization: -8.67 SS G_CDS: -0.29 Total: -8.97 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.48 Total: 11.36 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -2.24 Total: -4.92 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -2.25 Total: -16.00 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.42 kcal Total: -21.68 1.74 -19.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12496546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.336 kcal (2) G-P(sol) polarization free energy of solvation -21.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds