Wall clock time and date at job start Sun Mar 7 2021 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.52998 * 109.47101 * 120.00107 * 2 1 3 5 5 H 1.08997 * 109.47254 * 300.00501 * 4 2 1 6 6 C 1.53008 * 109.47251 * 60.00179 * 4 2 1 7 7 C 1.52998 * 109.47251 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47101 * 299.99821 * 7 6 4 9 9 H 1.08997 * 109.47476 * 300.00365 * 8 7 6 10 10 N 1.46498 * 109.47316 * 179.97438 * 8 7 6 11 11 C 1.34779 * 119.99295 * 84.99673 * 10 8 7 12 12 O 1.21621 * 120.00337 * 0.02562 * 11 10 8 13 13 C 1.47295 * 119.99524 * 180.02562 * 11 10 8 14 14 C 1.40369 * 120.04705 * 179.97438 * 13 11 10 15 15 O 1.35679 * 120.13698 * 0.02562 * 14 13 11 16 16 C 1.38319 * 119.72937 * 179.74502 * 14 13 11 17 17 C 1.39563 * 119.80772 * 0.50681 * 16 14 13 18 18 C 1.47570 * 119.95445 * 179.78599 * 17 16 14 19 19 C 1.36109 * 125.94726 * 179.72568 * 18 17 16 20 20 C 1.40795 * 106.73337 * 180.28004 * 19 18 17 21 21 C 1.34832 * 107.04964 * 359.60553 * 20 19 18 22 22 C 1.50703 * 125.65080 * 180.14040 * 21 20 19 23 23 O 1.42907 * 109.46811 * 65.27742 * 22 21 20 24 24 Si 1.86303 * 109.47105 * 185.27311 * 22 21 20 25 25 O 1.34226 * 108.69723 * 0.39803 * 21 20 19 26 26 C 1.39963 * 120.09099 * 359.51248 * 17 16 14 27 27 C 1.36386 * 120.28014 * 0.23455 * 26 17 16 28 28 C 1.53008 * 109.46922 * 59.99978 * 8 7 6 29 29 C 1.52998 * 109.47251 * 299.99931 * 28 8 7 30 30 H 1.08991 * 109.47055 * 299.99670 * 1 2 3 31 31 H 1.08999 * 109.47148 * 59.99829 * 1 2 3 32 32 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46949 * 239.99918 * 2 1 3 34 34 H 1.08995 * 109.46920 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47283 * 300.00088 * 3 2 1 36 36 H 1.09003 * 109.46984 * 59.99824 * 3 2 1 37 37 H 1.09004 * 109.46841 * 299.99996 * 6 4 2 38 38 H 1.09002 * 109.46594 * 59.99554 * 6 4 2 39 39 H 1.09000 * 109.47013 * 180.02562 * 7 6 4 40 40 H 1.08998 * 109.47065 * 59.99561 * 7 6 4 41 41 H 0.96996 * 120.00351 * 265.00516 * 10 8 7 42 42 H 0.96702 * 114.00307 * 89.99420 * 15 14 13 43 43 H 1.08001 * 120.09665 * 180.29863 * 16 14 13 44 44 H 1.08002 * 126.62860 * 0.02562 * 19 18 17 45 45 H 1.07995 * 126.47362 * 179.73657 * 20 19 18 46 46 H 1.08995 * 109.47549 * 305.27249 * 22 21 20 47 47 H 0.96694 * 113.99895 * 59.99647 * 23 22 21 48 48 H 1.48501 * 110.00021 * 58.68369 * 24 22 21 49 49 H 1.48500 * 110.00223 * 180.02562 * 24 22 21 50 50 H 1.08003 * 119.85664 * 180.25257 * 26 17 16 51 51 H 1.07995 * 119.90943 * 180.02562 * 27 26 17 52 52 H 1.08997 * 109.46729 * 59.99930 * 28 8 7 53 53 H 1.09004 * 109.46841 * 179.97438 * 28 8 7 54 54 H 1.09000 * 109.47013 * 179.97438 * 29 28 8 55 55 H 1.08998 * 109.47065 * 300.00439 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1639 1.2492 7 6 2.0395 -2.8849 2.4987 8 6 3.5695 -2.8849 2.4994 9 1 3.9333 -3.3988 1.6096 10 7 4.0574 -3.5748 3.6961 11 6 4.1860 -4.9165 3.6950 12 8 3.8975 -5.5543 2.7004 13 6 4.6760 -5.6102 4.8984 14 6 4.8099 -7.0075 4.8987 15 8 4.4891 -7.7227 3.7912 16 6 5.2756 -7.6518 6.0306 17 6 5.5991 -6.9098 7.1675 18 6 6.0918 -7.5943 8.3785 19 6 6.4462 -6.9938 9.5474 20 6 6.8594 -8.0182 10.4204 21 6 6.7304 -9.1826 9.7528 22 6 7.0554 -10.5490 10.2991 23 8 6.1640 -10.8570 11.3728 24 14 6.8640 -11.8189 8.9494 25 8 6.2698 -8.9224 8.5191 26 6 5.4622 -5.5169 7.1589 27 6 5.0082 -4.8774 6.0431 28 6 4.0795 -1.4423 2.4994 29 6 3.5700 -0.7213 1.2499 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4400 -2.1638 1.2492 38 1 1.8934 -2.6776 0.3591 39 1 1.6766 -3.9127 2.4984 40 1 1.6758 -2.3710 3.3885 41 1 4.2877 -3.0661 4.4892 42 1 5.2262 -7.8506 3.1784 43 1 5.3855 -8.7262 6.0356 44 1 6.4199 -5.9357 9.7621 45 1 7.2111 -7.8949 11.4340 46 1 8.0821 -10.5594 10.6648 47 1 5.2310 -10.8656 11.1192 48 1 7.7626 -11.4920 7.8133 49 1 7.1811 -13.1709 9.4755 50 1 5.7175 -4.9461 8.0395 51 1 4.9053 -3.8024 6.0429 52 1 3.7157 -0.9285 3.3891 53 1 5.1695 -1.4424 2.5003 54 1 3.9330 0.3065 1.2501 55 1 3.9337 -1.2352 0.3601 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12807986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:23 Heat of formation + Delta-G solvation = -81.169620 kcal Electronic energy + Delta-G solvation = -35134.579620 eV Core-core repulsion = 30490.211748 eV Total energy + Delta-G solvation = -4644.367872 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.74891 -41.67940 -40.46340 -39.31362 -38.10347 -37.83396 -36.61304 -34.51008 -34.13161 -33.16978 -31.90180 -31.32920 -30.61836 -29.30293 -28.00109 -26.99242 -24.77197 -24.07944 -23.63058 -23.45434 -22.39995 -21.85197 -21.31891 -21.20921 -20.59225 -19.72219 -18.76537 -18.52360 -17.70314 -17.58102 -17.41735 -16.64009 -16.59432 -16.36591 -16.10461 -15.78063 -15.73569 -15.50613 -15.21391 -15.11384 -14.80525 -14.51571 -14.47163 -14.38967 -14.24107 -14.16355 -13.99111 -13.87931 -13.60508 -13.50776 -13.36431 -13.06504 -12.83731 -12.76855 -12.71278 -12.63802 -12.28679 -12.26781 -12.08896 -12.02749 -11.89122 -11.60779 -11.31085 -11.17496 -11.13533 -10.95230 -10.78304 -10.73408 -10.58710 -10.06934 -9.95232 -9.01970 -5.05390 -0.79518 0.14319 0.64059 1.12636 1.39343 1.45353 1.73440 1.85825 1.92864 2.06488 2.64329 3.01643 3.28489 3.40997 3.59861 3.60848 3.68933 3.72785 3.82746 3.87011 3.98239 4.00319 4.03850 4.13539 4.21756 4.30602 4.30840 4.33893 4.39669 4.40192 4.52008 4.55636 4.63342 4.66790 4.68644 4.69907 4.78684 4.81752 4.83684 4.88379 5.01949 5.02698 5.04738 5.06619 5.10209 5.10469 5.15872 5.20487 5.21610 5.21844 5.30745 5.38284 5.38725 5.42003 5.50851 5.54258 5.56419 5.64441 5.96121 6.50036 6.58669 6.68866 7.18958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.111 4.111 7 C -0.123 4.123 8 C 0.148 3.852 9 H 0.063 0.937 10 N -0.710 5.710 11 C 0.555 3.445 12 O -0.564 6.564 13 C -0.179 4.179 14 C 0.159 3.841 15 O -0.495 6.495 16 C -0.152 4.152 17 C 0.025 3.975 18 C 0.005 3.995 19 C -0.172 4.172 20 C -0.184 4.184 21 C -0.053 4.053 22 C -0.024 4.024 23 O -0.540 6.540 24 Si 0.766 3.234 25 O -0.174 6.174 26 C -0.110 4.110 27 C -0.052 4.052 28 C -0.118 4.118 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.414 0.586 42 H 0.408 0.592 43 H 0.140 0.860 44 H 0.182 0.818 45 H 0.166 0.834 46 H 0.139 0.861 47 H 0.399 0.601 48 H -0.295 1.295 49 H -0.277 1.277 50 H 0.169 0.831 51 H 0.172 0.828 52 H 0.086 0.914 53 H 0.076 0.924 54 H 0.082 0.918 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 6.493 3.735 7.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.149 4.149 7 C -0.162 4.162 8 C 0.044 3.956 9 H 0.081 0.919 10 N -0.362 5.362 11 C 0.343 3.657 12 O -0.444 6.444 13 C -0.183 4.183 14 C 0.113 3.887 15 O -0.308 6.308 16 C -0.171 4.171 17 C 0.024 3.976 18 C -0.044 4.044 19 C -0.191 4.191 20 C -0.203 4.203 21 C -0.103 4.103 22 C -0.134 4.134 23 O -0.349 6.349 24 Si 0.671 3.329 25 O -0.072 6.072 26 C -0.127 4.127 27 C -0.070 4.070 28 C -0.155 4.155 29 C -0.150 4.150 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.252 0.748 42 H 0.267 0.733 43 H 0.158 0.842 44 H 0.199 0.801 45 H 0.183 0.817 46 H 0.156 0.844 47 H 0.250 0.750 48 H -0.222 1.222 49 H -0.203 1.203 50 H 0.187 0.813 51 H 0.189 0.811 52 H 0.104 0.896 53 H 0.095 0.905 54 H 0.101 0.899 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.984 5.162 2.883 5.994 hybrid contribution 0.831 0.139 0.146 0.855 sum 1.815 5.301 3.028 6.369 Atomic orbital electron populations 1.21906 0.95433 1.01716 1.01765 1.21128 0.95641 0.96425 0.97888 1.21891 1.01444 0.95486 1.01758 1.21188 0.95317 0.94695 0.98276 0.90483 1.21581 1.00776 0.95543 0.96998 1.21850 0.95147 0.99788 0.99421 1.20986 0.93706 0.93433 0.87461 0.91892 1.45898 1.66815 1.05926 1.17598 1.18263 0.77491 0.82729 0.87215 1.90817 1.51061 1.66710 1.35782 1.20559 1.07979 0.93550 0.96225 1.18506 0.93711 0.88515 0.87967 1.84730 1.40649 1.73361 1.32055 1.21586 1.01360 1.01418 0.92698 1.17948 0.97270 0.93327 0.89036 1.20576 1.06984 0.80471 0.96357 1.22240 1.03007 1.02134 0.91735 1.21834 1.05145 0.91073 1.02217 1.23232 1.04537 0.99147 0.83431 1.24409 0.97150 0.93945 0.97932 1.86531 1.21861 1.91727 1.34732 0.93339 0.90070 0.75187 0.74307 1.83923 1.65702 1.25328 1.32248 1.21052 0.99898 0.91512 1.00272 1.21162 0.94297 1.01433 0.90099 1.21769 1.01306 0.92434 1.00034 1.21600 0.94932 1.01174 0.97288 0.92486 0.92973 0.92681 0.91947 0.91889 0.93108 0.92446 0.91338 0.92920 0.94208 0.90622 0.74814 0.73254 0.84204 0.80073 0.81673 0.84397 0.75014 1.22203 1.20296 0.81311 0.81105 0.89574 0.90523 0.89917 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 8.84 71.98 0.64 0.84 16 2 C -0.09 0.18 2.51 -10.79 -0.03 0.16 16 3 C -0.15 0.44 8.84 71.98 0.64 1.08 16 4 C -0.08 0.23 1.77 -10.79 -0.02 0.21 16 5 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.11 -0.01 4.85 30.60 0.15 0.14 16 7 C -0.12 -0.15 5.49 30.59 0.17 0.01 16 8 C 0.15 0.01 2.45 45.00 0.11 0.12 16 9 H 0.06 0.36 7.58 -2.39 -0.02 0.35 16 10 N -0.71 0.84 5.03 -445.91 -2.24 -1.40 16 11 C 0.55 3.31 7.72 86.62 0.67 3.98 16 12 O -0.56 -8.35 14.80 16.90 0.25 -8.10 16 13 C -0.18 -0.47 5.89 -19.97 -0.12 -0.58 16 14 C 0.16 0.86 6.71 22.81 0.15 1.02 16 15 O -0.49 -4.01 11.56 -68.97 -0.80 -4.81 16 16 C -0.15 -0.49 9.65 22.61 0.22 -0.27 16 17 C 0.02 0.01 5.87 -20.08 -0.12 -0.11 16 18 C 0.01 0.01 7.02 24.24 0.17 0.18 16 19 C -0.17 0.27 10.26 22.40 0.23 0.50 16 20 C -0.18 0.02 10.78 22.11 0.24 0.26 16 21 C -0.05 -0.05 6.21 24.90 0.15 0.10 16 22 C -0.02 0.03 2.98 71.24 0.21 0.24 16 23 O -0.54 0.84 12.88 -148.98 -1.92 -1.08 16 24 Si 0.77 -0.53 32.11 68.60 2.20 1.67 16 25 O -0.17 -0.52 8.79 -6.02 -0.05 -0.58 16 26 C -0.11 0.54 9.48 22.26 0.21 0.75 16 27 C -0.05 0.26 9.47 22.24 0.21 0.47 16 28 C -0.12 0.63 5.39 30.60 0.16 0.80 16 29 C -0.11 0.46 4.85 30.59 0.15 0.61 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.05 -0.04 6.43 -2.39 -0.02 -0.05 16 33 H 0.06 -0.03 8.14 -2.39 -0.02 -0.04 16 34 H 0.06 -0.25 6.43 -2.39 -0.02 -0.26 16 35 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.07 0.01 6.43 -2.38 -0.02 0.00 16 38 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.41 -3.45 6.61 -92.71 -0.61 -4.06 16 42 H 0.41 0.48 9.06 -74.06 -0.67 -0.19 16 43 H 0.14 0.39 7.90 -2.91 -0.02 0.37 16 44 H 0.18 -1.40 7.24 -2.91 -0.02 -1.42 16 45 H 0.17 -0.45 8.06 -2.91 -0.02 -0.48 16 46 H 0.14 -0.34 7.96 -2.39 -0.02 -0.36 16 47 H 0.40 -3.55 8.70 -74.06 -0.64 -4.19 16 48 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 49 H -0.28 -1.22 7.11 99.48 0.71 -0.51 16 50 H 0.17 -1.91 6.95 -2.91 -0.02 -1.93 16 51 H 0.17 -2.19 6.38 -2.91 -0.02 -2.21 16 52 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 54 H 0.08 -0.47 6.43 -2.39 -0.02 -0.49 16 55 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -22.99 436.27 0.69 -22.31 By element: Atomic # 1 Polarization: -17.57 SS G_CDS: -0.95 Total: -18.52 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 4.20 Total: 10.50 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -2.24 Total: -1.40 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -2.52 Total: -14.56 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: 2.20 Total: 1.67 kcal Total: -22.99 0.69 -22.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12807986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.864 kcal (2) G-P(sol) polarization free energy of solvation -22.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds