Wall clock time and date at job start Sun Mar 7 2021 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39284 * 121.03268 * 2 1 4 4 C 1.46498 * 134.19766 * 359.90599 * 3 2 1 5 5 C 1.50709 * 126.59496 * 0.31538 * 4 3 2 6 6 O 1.42904 * 109.46713 * 75.00058 * 5 4 3 7 7 Si 1.86299 * 109.46933 * 194.99710 * 5 4 3 8 8 C 1.34173 * 106.80414 * 180.33512 * 4 3 2 9 9 N 1.36942 * 109.95339 * 0.02562 * 8 4 3 10 10 C 1.37157 * 110.11292 * 359.97438 * 9 8 4 11 11 N 1.32826 * 132.96897 * 180.02562 * 10 9 8 12 12 C 1.31305 * 121.88843 * 179.97438 * 11 10 9 13 13 C 1.39753 * 121.03008 * 179.73574 * 2 1 3 14 14 C 1.47664 * 120.45434 * 359.97438 * 13 2 1 15 15 O 1.21575 * 119.99923 * 353.76926 * 14 13 2 16 16 N 1.34775 * 119.99787 * 173.76685 * 14 13 2 17 17 C 1.46495 * 119.99904 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.47445 * 34.99819 * 17 16 14 19 19 C 1.53004 * 109.47223 * 155.00213 * 17 16 14 20 20 C 1.52997 * 109.46914 * 179.97438 * 19 17 16 21 21 C 1.52993 * 109.47761 * 299.99702 * 20 19 17 22 22 H 1.08996 * 109.47455 * 300.00586 * 21 20 19 23 23 C 1.52997 * 109.47761 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.46951 * 59.99971 * 23 21 20 25 25 C 1.53002 * 109.47702 * 180.02562 * 23 21 20 26 26 C 1.53004 * 109.46664 * 60.00144 * 21 20 19 27 27 C 1.53004 * 109.46756 * 274.99575 * 17 16 14 28 28 H 1.08996 * 109.47339 * 263.98472 * 1 2 3 29 29 H 1.09002 * 109.46927 * 23.98201 * 1 2 3 30 30 H 1.09000 * 109.47380 * 143.98040 * 1 2 3 31 31 H 1.08996 * 109.47321 * 314.99895 * 5 4 3 32 32 H 0.96702 * 113.99576 * 59.99912 * 6 5 4 33 33 H 1.48507 * 109.99903 * 58.68522 * 7 5 4 34 34 H 1.48497 * 110.00073 * 180.02562 * 7 5 4 35 35 H 1.08003 * 125.02576 * 179.97438 * 8 4 3 36 36 H 0.97003 * 124.94590 * 179.97438 * 9 8 4 37 37 H 1.08001 * 119.30967 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00311 * 359.97438 * 16 14 13 39 39 H 1.08996 * 109.47232 * 59.99475 * 19 17 16 40 40 H 1.08994 * 109.46557 * 299.99644 * 19 17 16 41 41 H 1.08998 * 109.46937 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.46895 * 60.00454 * 20 19 17 43 43 H 1.09005 * 109.46895 * 300.00752 * 23 21 20 44 44 H 1.09003 * 109.47636 * 180.02562 * 24 23 21 45 45 H 1.08996 * 109.46946 * 60.00118 * 24 23 21 46 46 H 1.09003 * 109.47046 * 300.00357 * 24 23 21 47 47 H 1.08996 * 109.46850 * 300.00282 * 25 23 21 48 48 H 1.08996 * 109.46503 * 60.00049 * 25 23 21 49 49 H 1.08992 * 109.46918 * 179.97438 * 25 23 21 50 50 H 1.08996 * 109.47232 * 60.00408 * 26 21 20 51 51 H 1.09003 * 109.46798 * 180.02562 * 26 21 20 52 52 H 1.08991 * 109.47514 * 299.99835 * 27 17 16 53 53 H 1.09000 * 109.46923 * 60.00840 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 -0.0017 5 6 0.4525 3.1704 0.0025 6 8 -0.1142 3.0267 1.3065 7 14 0.5051 4.9752 -0.4563 8 6 2.9947 3.3126 -0.0082 9 7 4.0668 2.4606 -0.0114 10 6 3.6348 1.1588 -0.0063 11 7 4.2720 -0.0066 -0.0062 12 6 3.6266 -1.1500 -0.0001 13 6 2.2274 -1.1975 0.0055 14 6 1.5224 -2.4950 0.0121 15 8 0.3126 -2.5289 0.1270 16 7 2.2203 -3.6416 -0.1094 17 6 1.5209 -4.9288 -0.1034 18 1 0.5559 -4.8204 -0.5984 19 6 2.3612 -5.9693 -0.8466 20 6 1.6310 -7.3138 -0.8398 21 6 1.4153 -7.7699 0.6046 22 1 2.3804 -7.8781 1.0994 23 6 0.6856 -9.1146 0.6113 24 6 1.5264 -10.1547 -0.1317 25 6 0.4694 -9.5704 2.0558 26 6 0.5750 -6.7294 1.3477 27 6 1.3048 -5.3851 1.3409 28 1 -0.3634 -0.1077 1.0220 29 1 -0.3633 0.9390 -0.4177 30 1 -0.3634 -0.8312 -0.6043 31 1 -0.1578 2.6293 -0.7205 32 1 0.3784 3.4837 2.0019 33 1 1.1216 5.1407 -1.7972 34 1 -0.8684 5.5398 -0.4551 35 1 3.0597 4.3906 -0.0114 36 1 4.9965 2.7374 -0.0164 37 1 4.1869 -2.0734 -0.0007 38 1 3.1855 -3.6146 -0.2015 39 1 3.3262 -6.0778 -0.3516 40 1 2.5151 -5.6442 -1.8755 41 1 2.2294 -8.0549 -1.3696 42 1 0.6658 -7.2055 -1.3347 43 1 -0.2795 -9.0068 0.1163 44 1 1.0065 -11.1128 -0.1273 45 1 2.4916 -10.2625 0.3632 46 1 1.6801 -9.8298 -1.1608 47 1 1.4343 -9.6781 2.5511 48 1 -0.1298 -8.8293 2.5846 49 1 -0.0508 -10.5282 2.0605 50 1 -0.3902 -6.6212 0.8529 51 1 0.4216 -7.0541 2.3769 52 1 2.2697 -5.4937 1.8359 53 1 0.7061 -4.6439 1.8703 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12890568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:28 Heat of formation + Delta-G solvation = -14.993463 kcal Electronic energy + Delta-G solvation = -32459.121326 eV Core-core repulsion = 28296.824152 eV Total energy + Delta-G solvation = -4162.297175 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.86308 -41.28206 -39.94023 -38.71686 -37.71322 -36.77712 -35.06325 -34.23539 -31.94625 -31.89858 -31.27814 -29.38446 -28.76225 -28.00486 -26.45774 -24.94275 -24.18352 -23.49002 -23.37547 -21.73958 -21.19021 -20.68331 -20.54749 -19.30527 -18.78348 -17.73791 -17.56227 -17.17076 -16.72234 -16.56816 -16.41274 -15.89771 -15.58569 -15.48358 -15.29541 -15.15072 -15.09807 -14.69345 -14.57616 -14.41595 -14.22798 -14.11437 -13.97078 -13.77858 -13.68044 -13.37482 -13.34292 -13.13051 -13.05805 -12.73640 -12.62725 -12.31306 -12.26519 -12.08386 -12.02815 -12.01586 -11.61056 -11.31352 -11.28945 -11.18240 -11.02515 -10.91378 -10.51670 -10.20091 -10.09402 -9.62964 -9.11564 -4.99098 -0.36495 -0.09396 1.34701 1.42718 1.65280 1.74718 1.79340 2.04795 2.06159 2.73820 3.29500 3.46492 3.60184 3.61147 3.65335 3.68264 3.73343 3.76024 3.83030 4.03658 4.13011 4.13764 4.25945 4.29462 4.32791 4.33770 4.34578 4.39953 4.52418 4.56044 4.58449 4.66260 4.67459 4.68835 4.77212 4.81312 4.83425 4.97416 5.02068 5.02567 5.04651 5.10651 5.14124 5.18278 5.20719 5.21468 5.22378 5.30714 5.34305 5.38417 5.40996 5.53366 5.56224 5.64345 5.72558 6.22776 6.47954 6.81601 6.88216 7.16699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.059 3.941 3 C -0.167 4.167 4 C -0.207 4.207 5 C -0.051 4.051 6 O -0.558 6.558 7 Si 0.805 3.195 8 C 0.097 3.903 9 N -0.559 5.559 10 C 0.287 3.713 11 N -0.515 5.515 12 C 0.179 3.821 13 C -0.241 4.241 14 C 0.569 3.431 15 O -0.567 6.567 16 N -0.710 5.710 17 C 0.149 3.851 18 H 0.065 0.935 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.077 4.077 22 H 0.076 0.924 23 C -0.092 4.092 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.394 0.606 33 H -0.280 1.280 34 H -0.306 1.306 35 H 0.232 0.768 36 H 0.439 0.561 37 H 0.194 0.806 38 H 0.412 0.588 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.053 0.947 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 2.686 0.550 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.050 3.950 3 C -0.174 4.174 4 C -0.215 4.215 5 C -0.159 4.159 6 O -0.365 6.365 7 Si 0.709 3.291 8 C -0.030 4.030 9 N -0.166 5.166 10 C 0.054 3.946 11 N -0.228 5.228 12 C 0.011 3.989 13 C -0.248 4.248 14 C 0.357 3.643 15 O -0.447 6.447 16 N -0.362 5.362 17 C 0.045 3.955 18 H 0.083 0.917 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.095 4.095 22 H 0.095 0.905 23 C -0.111 4.111 24 C -0.206 4.206 25 C -0.208 4.208 26 C -0.149 4.149 27 C -0.162 4.162 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.244 0.756 33 H -0.206 1.206 34 H -0.234 1.234 35 H 0.248 0.752 36 H 0.281 0.719 37 H 0.210 0.790 38 H 0.250 0.750 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.093 0.907 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.398 3.065 -0.263 7.099 hybrid contribution -0.535 -0.731 -0.165 0.920 sum 5.863 2.334 -0.428 6.325 Atomic orbital electron populations 1.20959 0.89603 1.02865 1.03096 1.20058 0.96900 0.90360 0.87675 1.19783 0.93387 0.94499 1.09750 1.20811 0.96397 0.90264 1.13979 1.24811 0.89940 1.12489 0.88697 1.86498 1.54506 1.78624 1.16921 0.94059 0.80673 0.72501 0.81867 1.22400 0.83605 0.97377 0.99596 1.41619 1.10729 1.01604 1.62666 1.18781 0.89436 0.86961 0.99464 1.66517 1.40790 0.96468 1.19018 1.22944 0.89602 0.95346 0.91025 1.20525 0.95527 0.93327 1.15443 1.18030 0.86474 0.84068 0.75688 1.90740 1.15199 1.87583 1.51202 1.45880 1.11381 1.04978 1.73952 1.20997 0.96331 0.81796 0.96376 0.91702 1.21774 0.99272 0.93914 1.00720 1.21593 1.00742 0.96049 0.96558 1.21185 0.99033 0.93450 0.95828 0.90532 1.21128 0.98984 0.94658 0.96302 1.21893 0.99891 0.98284 1.00533 1.21903 1.01744 1.00955 0.96192 1.21571 0.98512 0.93766 1.01007 1.21841 1.01181 0.96960 0.96177 0.90906 0.91155 0.90200 0.88793 0.75627 1.20646 1.23371 0.75162 0.71909 0.78979 0.75017 0.89636 0.90738 0.90016 0.92440 0.91915 0.93072 0.92472 0.91957 0.92512 0.92618 0.92953 0.92842 0.91254 0.90675 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.68 71.24 0.62 -0.53 16 2 C 0.06 0.55 5.98 -19.25 -0.12 0.44 16 3 C -0.17 -1.11 6.16 -20.19 -0.12 -1.23 16 4 C -0.21 -0.09 5.57 -18.63 -0.10 -0.19 16 5 C -0.05 0.00 2.08 71.24 0.15 0.15 16 6 O -0.56 -0.68 12.88 -148.98 -1.92 -2.60 16 7 Si 0.80 -4.01 30.76 68.60 2.11 -1.90 16 8 C 0.10 -0.61 10.44 82.97 0.87 0.25 16 9 N -0.56 1.91 6.04 -192.25 -1.16 0.75 16 10 C 0.29 1.34 8.42 134.02 1.13 2.47 16 11 N -0.51 -2.80 10.37 -191.74 -1.99 -4.79 16 12 C 0.18 0.52 10.67 85.20 0.91 1.43 16 13 C -0.24 -1.69 5.89 -19.99 -0.12 -1.81 16 14 C 0.57 4.54 7.68 86.73 0.67 5.20 16 15 O -0.57 -8.59 13.16 -3.95 -0.05 -8.64 16 16 N -0.71 -0.59 5.03 -445.58 -2.24 -2.83 16 17 C 0.15 0.18 2.45 45.00 0.11 0.29 16 18 H 0.06 0.43 7.58 -2.39 -0.02 0.41 16 19 C -0.12 0.45 5.39 30.59 0.16 0.61 16 20 C -0.11 0.33 4.85 30.59 0.15 0.48 16 21 C -0.08 0.16 1.77 -10.80 -0.02 0.14 16 22 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 23 C -0.09 0.12 2.51 -10.79 -0.03 0.09 16 24 C -0.15 0.32 8.84 71.98 0.64 0.96 16 25 C -0.15 0.12 8.84 71.98 0.64 0.76 16 26 C -0.11 -0.06 4.85 30.58 0.15 0.09 16 27 C -0.12 -0.22 5.49 30.58 0.17 -0.06 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.62 5.06 -2.39 -0.01 0.61 16 30 H 0.08 1.07 5.96 -2.39 -0.01 1.06 16 31 H 0.09 0.33 6.03 -2.39 -0.01 0.32 16 32 H 0.39 -3.01 8.70 -74.06 -0.64 -3.65 16 33 H -0.28 0.22 7.11 99.48 0.71 0.92 16 34 H -0.31 -1.19 7.11 99.48 0.71 -0.48 16 35 H 0.23 -3.80 6.35 -2.91 -0.02 -3.82 16 36 H 0.44 -4.04 8.96 -92.71 -0.83 -4.87 16 37 H 0.19 -1.02 6.43 -2.91 -0.02 -1.04 16 38 H 0.41 -2.27 6.68 -92.71 -0.62 -2.89 16 39 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.08 -0.36 6.43 -2.39 -0.02 -0.38 16 42 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.06 -0.19 6.43 -2.39 -0.02 -0.20 16 47 H 0.06 -0.07 8.14 -2.39 -0.02 -0.08 16 48 H 0.05 -0.02 6.43 -2.39 -0.02 -0.03 16 49 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.07 0.04 6.43 -2.39 -0.02 0.02 16 52 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 53 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 Total: 0.00 -24.28 402.34 -0.50 -24.78 By element: Atomic # 1 Polarization: -13.23 SS G_CDS: -1.09 Total: -14.32 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.84 Total: 9.54 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -5.39 Total: -6.86 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.97 Total: -11.24 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.11 Total: -1.90 kcal Total: -24.28 -0.50 -24.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12890568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.790 kcal (2) G-P(sol) polarization free energy of solvation -24.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds