Wall clock time and date at job start Sun Mar 7 2021 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.47628 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46806 * 300.00074 * 7 6 4 9 9 H 1.08992 * 109.47399 * 299.99952 * 8 7 6 10 10 N 1.46499 * 109.46840 * 179.97438 * 8 7 6 11 11 C 1.34781 * 119.99874 * 85.00543 * 10 8 7 12 12 O 1.21640 * 119.99805 * 359.97438 * 11 10 8 13 13 C 1.47057 * 119.99843 * 179.97438 * 11 10 8 14 14 C 1.35863 * 125.42673 * 179.69451 * 13 11 10 15 15 C 1.41588 * 107.73224 * 179.84726 * 14 13 11 16 16 C 1.40063 * 133.38626 * 180.11230 * 15 14 13 17 17 C 1.36473 * 119.83200 * 180.32586 * 16 15 14 18 18 C 1.38891 * 120.61533 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.67770 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.47425 * 120.00121 * 19 18 17 21 21 Si 1.86305 * 109.46960 * 359.97438 * 19 18 17 22 22 C 1.37709 * 120.65136 * 0.02562 * 18 17 16 23 23 C 1.39194 * 119.80726 * 359.97438 * 22 18 17 24 24 N 1.37487 * 133.18428 * 179.97438 * 23 22 18 25 25 C 1.53002 * 109.46911 * 59.99917 * 8 7 6 26 26 C 1.52992 * 109.47482 * 300.00014 * 4 2 1 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 6 4 2 35 35 H 1.09002 * 109.46716 * 60.00091 * 6 4 2 36 36 H 1.09001 * 109.47142 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.46838 * 59.99718 * 7 6 4 38 38 H 0.97002 * 120.00410 * 264.99761 * 10 8 7 39 39 H 1.08007 * 126.13549 * 359.97438 * 14 13 11 40 40 H 1.08003 * 120.08137 * 0.30292 * 16 15 14 41 41 H 1.08001 * 119.69314 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.47293 * 240.00516 * 19 18 17 43 43 H 0.96698 * 114.00169 * 299.99633 * 20 19 18 44 44 H 1.48499 * 110.00146 * 180.02562 * 21 19 18 45 45 H 1.48500 * 109.99991 * 301.32592 * 21 19 18 46 46 H 1.08004 * 120.09936 * 179.97438 * 22 18 17 47 47 H 0.96995 * 125.60651 * 359.97438 * 24 23 22 48 48 H 1.09004 * 109.46930 * 179.97438 * 25 8 7 49 49 H 1.09002 * 109.47067 * 59.99825 * 25 8 7 50 50 H 1.09002 * 109.47103 * 300.00247 * 26 4 2 51 51 H 1.09001 * 109.47066 * 60.00169 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 6 4.0799 -1.4414 -2.4993 8 6 3.5704 -2.8840 -2.4996 9 1 3.9341 -3.3980 -1.6100 10 7 4.0582 -3.5739 -3.6964 11 6 5.2804 -4.1421 -3.6956 12 8 5.9785 -4.0817 -2.7013 13 6 5.7698 -4.8351 -4.8968 14 6 6.9808 -5.4389 -5.0192 15 6 7.0595 -5.9872 -6.3222 16 6 8.0466 -6.7103 -7.0037 17 6 7.8296 -7.1081 -8.2911 18 6 6.6370 -6.8031 -8.9342 19 6 6.4200 -7.2524 -10.3563 20 8 5.2773 -8.1083 -10.4164 21 14 7.9228 -8.1792 -10.9508 22 6 5.6512 -6.0933 -8.2856 23 6 5.8488 -5.6765 -6.9723 24 7 5.0739 -4.9708 -6.0825 25 6 2.0404 -2.8845 -2.4993 26 6 1.5300 -2.1636 -1.2494 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 0.0005 34 1 3.9330 0.3071 -1.2498 35 1 3.9336 -1.2344 -0.3597 36 1 5.1699 -1.4414 -2.4993 37 1 3.7162 -0.9274 -3.3890 38 1 3.5016 -3.6218 -4.4894 39 1 7.7453 -5.4930 -4.2582 40 1 8.9771 -6.9522 -6.5118 41 1 8.5921 -7.6660 -8.8143 42 1 6.2558 -6.3818 -10.9913 43 1 5.3537 -8.9052 -9.8740 44 1 7.7218 -8.6272 -12.3523 45 1 9.1234 -7.3096 -10.8633 46 1 4.7273 -5.8607 -8.7944 47 1 4.1851 -4.6246 -6.2584 48 1 1.6774 -3.9123 -2.4999 49 1 1.6767 -2.3705 -3.3890 50 1 1.8933 -2.6775 -0.3594 51 1 0.4400 -2.1636 -1.2494 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13158378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:37 Heat of formation + Delta-G solvation = -28.658033 kcal Electronic energy + Delta-G solvation = -29392.296924 eV Core-core repulsion = 25450.370739 eV Total energy + Delta-G solvation = -3941.926185 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.73702 -41.11182 -39.80162 -38.92283 -36.88364 -36.80063 -34.27525 -33.27966 -31.94912 -31.29430 -30.41542 -29.54902 -28.02751 -26.87353 -24.78911 -23.67787 -23.51124 -22.89590 -21.99337 -21.45652 -21.06289 -20.61697 -19.52959 -18.40611 -17.88200 -17.42267 -16.84007 -16.61251 -16.29108 -16.14099 -15.65386 -15.51738 -15.34353 -15.26364 -15.07998 -14.86795 -14.71302 -14.59236 -14.49389 -14.40939 -14.20322 -14.10909 -13.41740 -13.15478 -13.09579 -12.83622 -12.71461 -12.59028 -12.52195 -12.33570 -12.13069 -12.07012 -12.02821 -11.65553 -11.64795 -11.52659 -11.34136 -11.05718 -10.98646 -10.94596 -10.43138 -10.24608 -9.34428 -8.85028 -4.94147 -0.39325 0.51342 0.92438 1.34785 1.68176 1.72653 1.93286 2.02327 2.15048 2.76092 3.45709 3.55621 3.62370 3.67116 3.69146 3.72263 3.77542 3.99335 4.02737 4.07970 4.23763 4.25611 4.28222 4.29630 4.34863 4.43086 4.47423 4.49473 4.50581 4.60545 4.63244 4.65441 4.76804 4.81291 4.86539 4.95464 4.98060 4.99255 5.01107 5.05799 5.11621 5.16229 5.16988 5.24153 5.27673 5.32641 5.35545 5.39290 5.43938 5.52205 5.53641 5.56210 5.61245 5.96603 6.23227 6.40825 6.79563 6.92724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.070 0.930 10 N -0.709 5.709 11 C 0.585 3.415 12 O -0.560 6.560 13 C 0.010 3.990 14 C -0.118 4.118 15 C -0.135 4.135 16 C -0.058 4.058 17 C -0.147 4.147 18 C -0.089 4.089 19 C -0.071 4.071 20 O -0.555 6.555 21 Si 0.777 3.223 22 C -0.110 4.110 23 C 0.107 3.893 24 N -0.564 5.564 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.396 0.604 44 H -0.302 1.302 45 H -0.286 1.286 46 H 0.135 0.865 47 H 0.431 0.569 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -0.977 -0.997 4.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.088 0.912 10 N -0.360 5.360 11 C 0.372 3.628 12 O -0.438 6.438 13 C -0.100 4.100 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.076 4.076 17 C -0.166 4.166 18 C -0.091 4.091 19 C -0.181 4.181 20 O -0.363 6.363 21 Si 0.684 3.316 22 C -0.130 4.130 23 C -0.003 4.003 24 N -0.170 5.170 25 C -0.156 4.156 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.127 0.873 43 H 0.246 0.754 44 H -0.230 1.230 45 H -0.213 1.213 46 H 0.153 0.847 47 H 0.272 0.728 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.078 0.922 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.057 -0.404 -1.197 3.307 hybrid contribution -0.734 0.894 -0.224 1.178 sum -3.791 0.490 -1.420 4.077 Atomic orbital electron populations 1.21896 0.94869 1.02131 1.01734 1.21130 0.96000 0.96035 0.97910 1.21908 1.01127 0.96057 1.01735 1.21188 0.94290 0.95798 0.98265 0.90665 1.21585 0.95799 1.00515 0.97018 1.21859 0.99880 0.95012 0.99503 1.21081 0.95219 0.92231 0.87157 0.91206 1.45889 1.16586 1.55717 1.17797 1.17316 0.81881 0.77894 0.85693 1.90854 1.57367 1.61153 1.34435 1.19992 0.95063 1.07570 0.87360 1.21101 0.96592 1.00037 0.96829 1.18437 0.95949 1.04869 0.94689 1.20637 0.98174 0.94868 0.93960 1.20694 0.97417 1.03159 0.95310 1.20162 0.94135 0.98282 0.96481 1.25159 0.99864 0.98180 0.94871 1.86462 1.40094 1.37549 1.72180 0.93569 0.73178 0.85380 0.79513 1.19987 1.00927 1.01194 0.90919 1.18456 0.91875 0.97624 0.92383 1.41782 1.17552 1.48039 1.09637 1.21783 0.91742 1.01986 1.00125 1.21607 1.01421 0.94731 0.97215 0.92558 0.91906 0.93066 0.91752 0.92601 0.92948 0.92553 0.91175 0.92560 0.93660 0.90796 0.75337 0.82777 0.83463 0.83579 0.87329 0.75414 1.22999 1.21292 0.84714 0.72838 0.90593 0.89807 0.92182 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 8.84 71.98 0.64 1.10 16 2 C -0.09 0.22 2.51 -10.79 -0.03 0.19 16 3 C -0.15 0.27 8.84 71.98 0.64 0.90 16 4 C -0.08 0.26 1.77 -10.80 -0.02 0.25 16 5 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.11 0.11 4.85 30.59 0.15 0.26 16 7 C -0.12 -0.01 5.49 30.60 0.17 0.15 16 8 C 0.15 -0.11 2.45 44.99 0.11 0.00 16 9 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 10 N -0.71 1.09 5.07 -446.16 -2.26 -1.17 16 11 C 0.59 3.20 7.76 86.56 0.67 3.88 16 12 O -0.56 -7.71 16.50 -4.16 -0.07 -7.77 16 13 C 0.01 0.04 6.97 39.91 0.28 0.31 16 14 C -0.12 -0.65 10.53 22.55 0.24 -0.41 16 15 C -0.13 -0.52 6.16 -21.36 -0.13 -0.65 16 16 C -0.06 -0.03 10.06 22.30 0.22 0.20 16 17 C -0.15 0.21 8.59 22.01 0.19 0.40 16 18 C -0.09 0.06 5.40 -19.83 -0.11 -0.05 16 19 C -0.07 0.13 2.81 71.24 0.20 0.33 16 20 O -0.55 0.73 12.76 -148.98 -1.90 -1.17 16 21 Si 0.78 -2.29 29.75 68.60 2.04 -0.25 16 22 C -0.11 -0.03 9.61 22.37 0.22 0.18 16 23 C 0.11 0.21 7.25 39.13 0.28 0.49 16 24 N -0.56 0.71 6.07 -177.18 -1.08 -0.37 16 25 C -0.12 0.66 5.39 30.61 0.17 0.82 16 26 C -0.11 0.50 4.86 30.61 0.15 0.65 16 27 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 29 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 -0.08 6.43 -2.39 -0.02 -0.09 16 34 H 0.07 -0.06 6.43 -2.39 -0.02 -0.07 16 35 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.41 -3.27 7.66 -92.71 -0.71 -3.98 16 39 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 41 H 0.15 -0.83 4.82 -2.91 -0.01 -0.84 16 42 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 43 H 0.40 -3.57 8.70 -74.06 -0.64 -4.22 16 44 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 45 H -0.29 -0.53 7.11 99.48 0.71 0.17 16 46 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 47 H 0.43 -3.44 8.12 -92.71 -0.75 -4.19 16 48 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 49 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 51 H 0.08 -0.48 6.43 -2.39 -0.02 -0.49 16 Total: 0.00 -18.12 396.95 -0.35 -18.47 By element: Atomic # 1 Polarization: -15.64 SS G_CDS: -1.11 Total: -16.75 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 4.03 Total: 9.02 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -3.34 Total: -1.54 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -1.97 Total: -8.95 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.04 Total: -0.25 kcal Total: -18.12 -0.35 -18.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13158378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.188 kcal (2) G-P(sol) polarization free energy of solvation -18.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds