Wall clock time and date at job start Sun Mar 7 2021 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00163 * 2 1 3 5 5 H 1.08992 * 109.47280 * 300.00199 * 4 2 1 6 6 C 1.53002 * 109.46978 * 60.00126 * 4 2 1 7 7 C 1.52997 * 109.46978 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47164 * 299.99874 * 7 6 4 9 9 H 1.08998 * 109.46505 * 299.99708 * 8 7 6 10 10 N 1.46500 * 109.47249 * 180.02562 * 8 7 6 11 11 C 1.34770 * 120.00256 * 84.99846 * 10 8 7 12 12 O 1.21592 * 120.00149 * 359.97438 * 11 10 8 13 13 C 1.47564 * 120.00043 * 180.02562 * 11 10 8 14 14 C 1.40210 * 120.12190 * 179.97438 * 13 11 10 15 15 O 1.35651 * 120.00224 * 359.95976 * 14 13 11 16 16 C 1.38819 * 119.99783 * 179.97438 * 14 13 11 17 17 C 1.37770 * 120.24110 * 0.02562 * 16 14 13 18 18 C 1.39842 * 120.24845 * 359.97438 * 17 16 14 19 19 C 1.47817 * 120.00516 * 179.97438 * 18 17 16 20 20 C 1.35936 * 125.92398 * 0.02562 * 19 18 17 21 21 C 1.40972 * 106.73854 * 179.97438 * 20 19 18 22 22 C 1.34705 * 107.03088 * 359.97438 * 21 20 19 23 23 C 1.50696 * 125.66692 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.46934 * 64.99628 * 23 22 21 25 25 Si 1.86299 * 109.47345 * 184.99951 * 23 22 21 26 26 O 1.34344 * 108.66511 * 359.76949 * 22 21 20 27 27 C 1.39178 * 119.99681 * 359.75254 * 18 17 16 28 28 C 1.52997 * 109.47127 * 59.99836 * 8 7 6 29 29 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.46505 * 300.00129 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99728 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47002 * 240.00426 * 2 1 3 34 34 H 1.09004 * 109.47261 * 300.00303 * 3 2 1 35 35 H 1.09001 * 109.47289 * 60.00046 * 3 2 1 36 36 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47097 * 299.99801 * 6 4 2 38 38 H 1.09001 * 109.47142 * 59.99766 * 6 4 2 39 39 H 1.09001 * 109.47375 * 59.99908 * 7 6 4 40 40 H 1.09000 * 109.47140 * 179.97438 * 7 6 4 41 41 H 0.97005 * 119.99374 * 264.99912 * 10 8 7 42 42 H 0.96694 * 114.00420 * 89.99452 * 15 14 13 43 43 H 1.07994 * 119.88225 * 179.97438 * 16 14 13 44 44 H 1.08001 * 119.87451 * 180.02562 * 17 16 14 45 45 H 1.07998 * 126.63433 * 359.93703 * 20 19 18 46 46 H 1.08005 * 126.48341 * 180.02562 * 21 20 19 47 47 H 1.09003 * 109.47166 * 304.99542 * 23 22 21 48 48 H 0.96703 * 113.99442 * 180.02562 * 24 23 22 49 49 H 1.48497 * 110.00206 * 178.68124 * 25 23 22 50 50 H 1.48502 * 109.99581 * 299.99973 * 25 23 22 51 51 H 1.07999 * 120.12043 * 180.27718 * 27 18 17 52 52 H 1.09002 * 109.47153 * 180.02562 * 28 8 7 53 53 H 1.09001 * 109.46832 * 60.00321 * 28 8 7 54 54 H 1.09004 * 109.47368 * 60.00217 * 29 4 2 55 55 H 1.09001 * 109.47372 * 300.00372 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 6 2.0395 -2.8849 2.4986 8 6 3.5696 -2.8849 2.4993 9 1 3.9332 -3.3989 1.6095 10 7 4.0575 -3.5759 3.6954 11 6 4.1862 -4.9174 3.6933 12 8 3.8970 -5.5544 2.6988 13 6 4.6771 -5.6134 4.8983 14 6 4.8114 -7.0091 4.8991 15 8 4.4892 -7.7222 3.7911 16 6 5.2740 -7.6611 6.0340 17 6 5.6019 -6.9419 7.1624 18 6 5.4718 -5.5496 7.1728 19 6 5.8246 -4.7833 8.3866 20 6 6.2854 -5.3058 9.5538 21 6 6.4900 -4.2216 10.4313 22 6 6.1480 -3.1032 9.7629 23 6 6.2065 -1.7002 10.3098 24 8 7.5659 -1.3487 10.5752 25 14 5.4913 -0.5167 9.0614 26 8 5.7516 -3.4458 8.5259 27 6 5.0144 -4.8849 6.0387 28 6 4.0796 -1.4424 2.4993 29 6 3.5700 -0.7218 1.2488 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 -0.0005 37 1 0.4401 -2.1638 1.2491 38 1 1.8934 -2.6776 0.3591 39 1 1.6759 -2.3710 3.3884 40 1 1.6759 -3.9124 2.4988 41 1 4.2878 -3.0677 4.4889 42 1 5.2254 -7.8491 3.1772 43 1 5.3764 -8.7362 6.0327 44 1 5.9615 -7.4552 8.0419 45 1 6.4604 -6.3498 9.7678 46 1 6.8530 -4.2771 11.4470 47 1 5.6302 -1.6460 11.2335 48 1 7.6792 -0.4565 10.9307 49 1 5.5139 0.8664 9.6016 50 1 6.2682 -0.5811 7.7975 51 1 4.9174 -3.8093 6.0431 52 1 5.1696 -1.4424 2.4993 53 1 3.7159 -0.9285 3.3891 54 1 3.9338 0.3058 1.2487 55 1 3.9330 -1.2358 0.3588 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13259648.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:47 Heat of formation + Delta-G solvation = -79.210302 kcal Electronic energy + Delta-G solvation = -36004.554782 eV Core-core repulsion = 31360.271872 eV Total energy + Delta-G solvation = -4644.282910 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.69659 -41.69260 -40.47337 -39.32701 -38.14393 -37.84272 -36.63708 -34.45770 -34.08118 -32.82976 -32.35504 -31.92813 -30.14920 -29.34361 -28.01067 -26.35299 -25.48965 -23.98575 -23.51201 -23.34377 -22.73260 -21.62465 -21.38341 -21.03807 -20.59654 -19.62101 -18.98239 -18.78881 -17.84217 -17.58414 -17.09847 -16.69640 -16.63922 -16.33364 -16.20205 -15.84449 -15.79174 -15.49193 -15.22561 -15.14771 -14.74900 -14.58025 -14.47638 -14.33493 -14.26507 -14.18047 -14.05998 -13.95119 -13.56380 -13.39514 -13.18189 -13.10370 -13.06821 -12.80356 -12.77390 -12.66963 -12.30867 -12.11697 -12.11073 -12.05262 -11.88943 -11.62567 -11.32869 -11.17995 -11.06417 -10.97569 -10.79545 -10.68865 -10.44604 -10.31147 -10.03978 -8.90396 -4.96534 -0.56591 -0.21632 0.75141 1.15526 1.38822 1.49591 1.71557 1.87012 1.92854 2.02043 2.62304 3.09938 3.20499 3.41986 3.55626 3.63200 3.67626 3.69131 3.77409 3.84151 4.01395 4.02263 4.05891 4.11727 4.18420 4.27524 4.31811 4.32116 4.37265 4.41662 4.50299 4.52527 4.63435 4.64699 4.65688 4.67959 4.78830 4.80649 4.82914 4.88216 4.99583 5.01209 5.02445 5.03217 5.08119 5.12253 5.14950 5.18068 5.19373 5.20715 5.28384 5.36103 5.36884 5.44810 5.48625 5.50747 5.54834 5.62717 6.00562 6.41875 6.51357 6.71320 7.11883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.123 4.123 8 C 0.149 3.851 9 H 0.066 0.934 10 N -0.715 5.715 11 C 0.556 3.444 12 O -0.558 6.558 13 C -0.179 4.179 14 C 0.163 3.837 15 O -0.494 6.494 16 C -0.145 4.145 17 C -0.044 4.044 18 C -0.041 4.041 19 C 0.022 3.978 20 C -0.188 4.188 21 C -0.181 4.181 22 C -0.019 4.019 23 C -0.044 4.044 24 O -0.555 6.555 25 Si 0.762 3.238 26 O -0.176 6.176 27 C -0.052 4.052 28 C -0.120 4.120 29 C -0.111 4.111 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.409 0.591 42 H 0.410 0.590 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.177 0.823 46 H 0.164 0.836 47 H 0.126 0.874 48 H 0.405 0.595 49 H -0.265 1.265 50 H -0.302 1.302 51 H 0.146 0.854 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.081 0.919 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 3.286 5.355 6.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.095 0.905 6 C -0.148 4.148 7 C -0.161 4.161 8 C 0.045 3.955 9 H 0.084 0.916 10 N -0.367 5.367 11 C 0.345 3.655 12 O -0.438 6.438 13 C -0.183 4.183 14 C 0.117 3.883 15 O -0.308 6.308 16 C -0.164 4.164 17 C -0.062 4.062 18 C -0.041 4.041 19 C -0.028 4.028 20 C -0.207 4.207 21 C -0.200 4.200 22 C -0.068 4.068 23 C -0.152 4.152 24 O -0.367 6.367 25 Si 0.665 3.335 26 O -0.074 6.074 27 C -0.071 4.071 28 C -0.158 4.158 29 C -0.148 4.148 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.247 0.753 42 H 0.270 0.730 43 H 0.183 0.817 44 H 0.184 0.816 45 H 0.195 0.805 46 H 0.182 0.818 47 H 0.143 0.857 48 H 0.257 0.743 49 H -0.190 1.190 50 H -0.230 1.230 51 H 0.164 0.836 52 H 0.090 0.910 53 H 0.102 0.898 54 H 0.100 0.900 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.328 3.150 3.939 5.054 hybrid contribution 1.541 0.399 0.612 1.705 sum 1.213 3.549 4.551 5.898 Atomic orbital electron populations 1.21907 0.95300 1.01792 1.01795 1.21122 0.95736 0.96341 0.97804 1.21896 1.01365 0.95573 1.01789 1.21195 0.95105 0.94877 0.98386 0.90492 1.21574 1.00880 0.95392 0.96922 1.21847 0.94804 0.99977 0.99518 1.21008 0.93982 0.93224 0.87332 0.91591 1.45989 1.66900 1.06187 1.17589 1.18273 0.77469 0.82603 0.87204 1.90802 1.50957 1.66581 1.35412 1.20277 1.08540 0.94160 0.95320 1.18893 0.92725 0.88016 0.88715 1.84703 1.40811 1.73170 1.32081 1.21578 1.00424 1.02349 0.92012 1.21422 0.94742 0.91134 0.98930 1.17705 1.03550 0.92802 0.90056 1.20442 1.06098 0.80149 0.96085 1.22171 1.04485 1.01815 0.92231 1.21803 1.04528 0.91208 1.02490 1.21743 1.05218 0.96886 0.82964 1.24030 0.88232 0.94931 1.08000 1.86523 1.24230 1.38943 1.86998 0.93794 0.88628 0.76011 0.75075 1.83881 1.67985 1.23752 1.31771 1.21389 0.94671 1.00484 0.90569 1.21797 1.01083 0.92780 1.00176 1.21599 0.95142 1.01052 0.97051 0.92483 0.92908 0.92575 0.91855 0.93007 0.92464 0.92039 0.91096 0.92755 0.90710 0.93939 0.75339 0.72966 0.81725 0.81571 0.80519 0.81813 0.85679 0.74294 1.19032 1.22957 0.83612 0.90999 0.89826 0.90039 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.15 8.84 71.98 0.64 0.78 16 2 C -0.09 0.12 2.51 -10.79 -0.03 0.09 16 3 C -0.15 0.32 8.84 71.98 0.64 0.96 16 4 C -0.08 0.14 1.78 -10.80 -0.02 0.13 16 5 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 6 C -0.11 -0.09 4.85 30.59 0.15 0.06 16 7 C -0.12 -0.31 5.49 30.60 0.17 -0.14 16 8 C 0.15 0.33 2.45 44.99 0.11 0.44 16 9 H 0.07 0.48 7.57 -2.39 -0.02 0.46 16 10 N -0.71 -1.64 5.03 -445.67 -2.24 -3.88 16 11 C 0.56 4.53 7.73 86.70 0.67 5.20 16 12 O -0.56 -8.66 14.81 16.99 0.25 -8.40 16 13 C -0.18 -0.87 5.88 -20.04 -0.12 -0.99 16 14 C 0.16 0.71 6.72 22.89 0.15 0.86 16 15 O -0.49 -3.21 11.55 -68.67 -0.79 -4.00 16 16 C -0.15 0.17 9.96 22.30 0.22 0.39 16 17 C -0.04 0.12 9.54 22.55 0.22 0.33 16 18 C -0.04 -0.03 5.87 -20.13 -0.12 -0.15 16 19 C 0.02 0.05 7.03 24.27 0.17 0.22 16 20 C -0.19 -0.03 10.26 22.41 0.23 0.20 16 21 C -0.18 -0.27 10.78 22.13 0.24 -0.03 16 22 C -0.02 -0.04 6.24 24.87 0.16 0.11 16 23 C -0.04 0.11 2.97 71.23 0.21 0.32 16 24 O -0.56 0.18 12.86 -148.98 -1.92 -1.73 16 25 Si 0.76 -2.36 32.11 68.60 2.20 -0.16 16 26 O -0.18 -0.61 8.80 -6.47 -0.06 -0.67 16 27 C -0.05 -0.07 9.20 22.79 0.21 0.14 16 28 C -0.12 0.31 5.40 30.61 0.17 0.47 16 29 C -0.11 0.27 4.85 30.61 0.15 0.42 16 30 H 0.06 -0.08 8.14 -2.39 -0.02 -0.09 16 31 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 -0.03 6.43 -2.39 -0.02 -0.04 16 33 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 -0.17 6.43 -2.39 -0.02 -0.19 16 37 H 0.07 0.04 6.43 -2.39 -0.02 0.03 16 38 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.04 0.34 8.14 -2.39 -0.02 0.33 16 41 H 0.41 -1.13 6.63 -92.70 -0.61 -1.74 16 42 H 0.41 -0.23 9.06 -74.06 -0.67 -0.90 16 43 H 0.17 -0.90 8.06 -2.91 -0.02 -0.93 16 44 H 0.17 -1.39 6.96 -2.91 -0.02 -1.41 16 45 H 0.18 -0.97 7.25 -2.91 -0.02 -0.99 16 46 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 47 H 0.13 -1.05 7.96 -2.39 -0.02 -1.06 16 48 H 0.40 -3.79 8.74 -74.06 -0.65 -4.43 16 49 H -0.26 0.29 7.11 99.48 0.71 0.99 16 50 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 51 H 0.15 -0.30 6.24 -2.91 -0.02 -0.32 16 52 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 53 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 54 H 0.08 -0.32 6.43 -2.39 -0.02 -0.34 16 55 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -22.70 436.49 0.70 -22.00 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.96 Total: -12.99 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 4.21 Total: 9.82 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -2.24 Total: -3.88 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -2.51 Total: -14.81 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: 2.20 Total: -0.16 kcal Total: -22.70 0.70 -22.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13259648.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.206 kcal (2) G-P(sol) polarization free energy of solvation -22.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds