Wall clock time and date at job start Sun Mar 7 2021 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 6 6 C 1.52993 * 109.47024 * 60.00057 * 4 2 1 7 7 C 1.53008 * 109.46733 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47086 * 299.99706 * 7 6 4 9 9 H 1.08992 * 109.47530 * 299.99942 * 8 7 6 10 10 N 1.46500 * 109.46927 * 179.97438 * 8 7 6 11 11 C 1.34781 * 119.99732 * 85.00287 * 10 8 7 12 12 O 1.21579 * 120.00027 * 0.02562 * 11 10 8 13 13 C 1.47653 * 119.99860 * 179.97438 * 11 10 8 14 14 C 1.40163 * 119.97646 * 359.72976 * 13 11 10 15 15 C 1.36353 * 120.66974 * 179.75033 * 14 13 11 16 16 C 1.39324 * 120.23826 * 0.51967 * 15 14 13 17 17 N 1.37397 * 133.25482 * 179.73542 * 16 15 14 18 18 C 1.36863 * 109.98378 * 180.02562 * 17 16 15 19 19 C 1.34190 * 109.96736 * 0.02562 * 18 17 16 20 20 C 1.50699 * 126.54028 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47225 * 254.95259 * 20 19 18 22 22 Si 1.86299 * 109.47109 * 14.95957 * 20 19 18 23 23 C 1.40911 * 119.63908 * 359.74415 * 16 15 14 24 24 C 1.39196 * 119.97227 * 179.97438 * 13 11 10 25 25 C 1.53002 * 109.46965 * 60.00512 * 8 7 6 26 26 C 1.52996 * 109.46975 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09002 * 109.47722 * 299.99886 * 6 4 2 35 35 H 1.09000 * 109.47250 * 59.99959 * 6 4 2 36 36 H 1.09001 * 109.46630 * 180.02562 * 7 6 4 37 37 H 1.08999 * 109.47300 * 60.00816 * 7 6 4 38 38 H 0.96998 * 120.00364 * 265.00774 * 10 8 7 39 39 H 1.08001 * 119.66438 * 0.02562 * 14 13 11 40 40 H 1.08006 * 119.87931 * 180.26125 * 15 14 13 41 41 H 0.97007 * 125.01068 * 0.03988 * 17 16 15 42 42 H 1.08007 * 125.01679 * 180.02562 * 18 17 16 43 43 H 1.09004 * 109.46663 * 134.95817 * 20 19 18 44 44 H 0.96708 * 113.99318 * 60.00166 * 21 20 19 45 45 H 1.48495 * 110.00415 * 58.67866 * 22 20 19 46 46 H 1.48496 * 109.99742 * 180.02562 * 22 20 19 47 47 H 1.07997 * 120.30422 * 0.02562 * 24 13 11 48 48 H 1.09002 * 109.47067 * 179.97438 * 25 8 7 49 49 H 1.09000 * 109.47312 * 59.99663 * 25 8 7 50 50 H 1.09004 * 109.47368 * 299.99783 * 26 4 2 51 51 H 1.09001 * 109.47372 * 59.99628 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1637 1.2491 7 6 2.0407 -2.8852 2.4980 8 6 3.5707 -2.8852 2.4973 9 1 3.9336 -3.3989 1.6072 10 7 4.0595 -3.5755 3.6935 11 6 4.1882 -4.9171 3.6920 12 8 3.8991 -5.5544 2.6978 13 6 4.6815 -5.6128 4.8973 14 6 5.0210 -4.8769 6.0409 15 6 5.4731 -5.5053 7.1635 16 6 5.6136 -6.8913 7.1833 17 7 6.0381 -7.7809 8.1404 18 6 5.9874 -9.0570 7.6483 19 6 5.5394 -9.0428 6.3835 20 6 5.3384 -10.2391 5.4893 21 8 6.3859 -10.2896 4.5186 22 14 5.3674 -11.7935 6.5158 23 6 5.2808 -7.6419 6.0382 24 6 4.8137 -6.9984 4.8953 25 6 4.0806 -1.4427 2.4974 26 6 3.5700 -0.7207 1.2495 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 0.4401 -2.1638 1.2491 35 1 1.8934 -2.6775 0.3591 36 1 1.6777 -3.9130 2.4977 37 1 1.6776 -2.3716 3.3883 38 1 4.2905 -3.0670 4.4866 39 1 4.9194 -3.8017 6.0344 40 1 5.7271 -4.9260 8.0390 41 1 6.3305 -7.5402 9.0335 42 1 6.2668 -9.9444 8.1969 43 1 4.3770 -10.1563 4.9824 44 1 7.2717 -10.3635 4.8995 45 1 4.3030 -11.7394 7.5498 46 1 5.1709 -12.9806 5.6455 47 1 4.5574 -7.5690 4.0150 48 1 5.1706 -1.4427 2.4974 49 1 3.7177 -0.9290 3.3877 50 1 3.9338 -1.2343 0.3594 51 1 3.9330 0.3071 1.2497 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589126_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:53 Heat of formation + Delta-G solvation = -33.607160 kcal Electronic energy + Delta-G solvation = -29685.118401 eV Core-core repulsion = 25742.977606 eV Total energy + Delta-G solvation = -3942.140795 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47535 -41.04884 -39.72863 -37.89744 -37.39851 -36.54854 -34.05565 -33.24883 -31.90137 -31.01964 -30.54760 -29.09869 -28.04226 -26.46750 -25.06601 -23.55119 -23.40403 -23.36444 -21.36269 -21.18851 -20.75367 -20.52649 -19.29024 -18.41311 -17.61285 -17.35392 -16.88171 -16.48016 -16.19536 -15.77338 -15.61725 -15.49019 -15.21279 -15.14815 -15.07937 -14.78380 -14.74855 -14.43950 -14.40686 -14.16113 -14.02923 -13.77747 -13.56167 -13.36701 -13.11286 -12.74972 -12.72226 -12.51817 -12.27783 -12.23776 -12.16845 -12.07947 -12.03419 -11.86115 -11.61353 -11.32625 -11.14697 -10.92165 -10.77490 -10.66120 -10.30951 -9.91559 -9.30837 -8.81739 -5.07860 -0.02714 0.20407 1.31384 1.48105 1.65788 1.97827 2.00735 2.05485 2.25046 3.00354 3.57685 3.58767 3.67727 3.68441 3.74234 3.78537 3.81975 3.92638 4.01673 4.09489 4.14764 4.31683 4.33421 4.37799 4.41292 4.43269 4.51445 4.53979 4.57011 4.59445 4.64900 4.68640 4.79097 4.80187 4.81655 4.97928 5.00096 5.03425 5.04536 5.10019 5.15450 5.19951 5.21884 5.26752 5.29785 5.37977 5.38183 5.42372 5.50505 5.53800 5.60425 5.61727 5.66769 5.99425 6.36475 6.64081 6.70524 7.40367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.083 4.083 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.129 4.129 8 C 0.146 3.854 9 H 0.089 0.911 10 N -0.726 5.726 11 C 0.564 3.436 12 O -0.537 6.537 13 C -0.168 4.168 14 C -0.067 4.067 15 C -0.134 4.134 16 C 0.118 3.882 17 N -0.586 5.586 18 C 0.061 3.939 19 C -0.192 4.192 20 C -0.034 4.034 21 O -0.539 6.539 22 Si 0.687 3.313 23 C -0.103 4.103 24 C 0.006 3.994 25 C -0.126 4.126 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.421 0.579 42 H 0.179 0.821 43 H 0.112 0.888 44 H 0.376 0.624 45 H -0.256 1.256 46 H -0.254 1.254 47 H 0.138 0.862 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 2.363 6.544 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.152 4.152 7 C -0.167 4.167 8 C 0.042 3.958 9 H 0.107 0.893 10 N -0.377 5.377 11 C 0.353 3.647 12 O -0.415 6.415 13 C -0.172 4.172 14 C -0.087 4.087 15 C -0.155 4.155 16 C 0.009 3.991 17 N -0.188 5.188 18 C -0.065 4.065 19 C -0.200 4.200 20 C -0.146 4.146 21 O -0.344 6.344 22 Si 0.589 3.411 23 C -0.108 4.108 24 C -0.013 4.013 25 C -0.164 4.164 26 C -0.151 4.151 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.233 0.767 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.259 0.741 42 H 0.195 0.805 43 H 0.130 0.870 44 H 0.223 0.777 45 H -0.181 1.181 46 H -0.178 1.178 47 H 0.156 0.844 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.225 1.231 5.795 6.328 hybrid contribution -0.107 0.915 0.729 1.175 sum 2.118 2.145 6.525 7.188 Atomic orbital electron populations 1.21909 0.95253 1.01918 1.01717 1.21145 0.95785 0.96137 0.98062 1.21906 1.01156 0.95943 1.01749 1.21245 0.95005 0.95723 0.98188 0.91114 1.21615 1.00788 0.94885 0.97883 1.21920 0.94962 1.01272 0.98573 1.21015 0.93918 0.92364 0.88498 0.89296 1.45990 1.67956 1.06829 1.16966 1.18181 0.77198 0.81943 0.87408 1.90794 1.50188 1.65961 1.34542 1.19576 1.08933 0.93921 0.94809 1.20587 0.97127 0.99270 0.91671 1.19662 1.05809 0.90314 0.99706 1.18429 0.99785 0.91564 0.89293 1.41730 1.57362 1.05168 1.14515 1.21678 1.02755 0.87346 0.94751 1.20762 1.10162 0.93769 0.95260 1.24412 0.93530 1.01870 0.94760 1.86541 1.17435 1.96614 1.33837 0.95338 0.88898 0.76494 0.80410 1.18929 1.05484 0.92589 0.93753 1.20703 0.91588 0.92539 0.96466 1.21803 1.00949 0.94246 0.99418 1.21591 0.95353 1.00635 0.97492 0.92338 0.92757 0.92790 0.91194 0.92751 0.92384 0.92789 0.91283 0.91672 0.91381 0.91869 0.76711 0.85439 0.85470 0.74123 0.80457 0.87030 0.77660 1.18097 1.17842 0.84428 0.91232 0.91412 0.91579 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.05 8.84 37.16 0.33 0.38 16 2 C -0.09 0.04 2.51 -90.62 -0.23 -0.18 16 3 C -0.15 0.11 8.84 37.16 0.33 0.43 16 4 C -0.08 0.06 1.78 -90.63 -0.16 -0.11 16 5 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 6 C -0.11 -0.03 4.85 -26.73 -0.13 -0.16 16 7 C -0.13 -0.13 5.49 -26.73 -0.15 -0.28 16 8 C 0.15 0.13 2.46 -67.93 -0.17 -0.03 16 9 H 0.09 0.28 7.58 -51.93 -0.39 -0.11 16 10 N -0.73 -0.63 5.03 -54.81 -0.28 -0.90 16 11 C 0.56 2.28 7.73 -12.41 -0.10 2.18 16 12 O -0.54 -4.25 15.99 5.30 0.08 -4.17 16 13 C -0.17 -0.47 5.87 -104.98 -0.62 -1.09 16 14 C -0.07 0.00 9.46 -39.54 -0.37 -0.38 16 15 C -0.13 0.05 10.00 -39.86 -0.40 -0.35 16 16 C 0.12 0.09 7.27 -83.96 -0.61 -0.52 16 17 N -0.59 1.13 6.05 -10.61 -0.06 1.06 16 18 C 0.06 -0.12 10.43 -16.73 -0.17 -0.29 16 19 C -0.19 -0.14 5.58 -102.69 -0.57 -0.71 16 20 C -0.03 -0.02 3.06 36.00 0.11 0.09 16 21 O -0.54 -0.75 12.88 -35.23 -0.45 -1.20 16 22 Si 0.69 -0.94 30.76 -169.99 -5.23 -6.17 16 23 C -0.10 -0.27 6.34 -105.16 -0.67 -0.94 16 24 C 0.01 0.03 9.64 -38.86 -0.37 -0.35 16 25 C -0.13 0.14 5.39 -26.76 -0.14 0.00 16 26 C -0.11 0.11 4.85 -26.76 -0.13 -0.02 16 27 H 0.06 -0.01 6.43 -51.93 -0.33 -0.35 16 28 H 0.05 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.06 6.43 -51.93 -0.33 -0.39 16 33 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.07 0.01 6.43 -51.93 -0.33 -0.32 16 35 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.40 -0.74 6.60 -40.82 -0.27 -1.01 16 39 H 0.13 -0.37 6.36 -52.49 -0.33 -0.70 16 40 H 0.13 -0.37 8.06 -52.48 -0.42 -0.79 16 41 H 0.42 -2.12 8.96 -40.82 -0.37 -2.48 16 42 H 0.18 -1.00 6.35 -52.48 -0.33 -1.33 16 43 H 0.11 0.20 7.96 -51.93 -0.41 -0.21 16 44 H 0.38 -1.08 8.70 45.56 0.40 -0.68 16 45 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 46 H -0.25 -0.58 7.11 56.52 0.40 -0.17 16 47 H 0.14 0.71 7.64 -52.49 -0.40 0.31 16 48 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 49 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 50 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 51 H 0.07 -0.10 6.43 -51.93 -0.33 -0.43 16 LS Contribution 396.94 15.07 5.98 5.98 Total: 0.00 -9.06 396.94 -12.32 -21.38 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: -8.14 Total: -13.65 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.22 Total: -2.34 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -0.34 Total: 0.16 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.37 Total: -5.37 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.23 Total: -6.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -9.06 -12.32 -21.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.229 kcal (2) G-P(sol) polarization free energy of solvation -9.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds