Wall clock time and date at job start Sun Mar 7 2021 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 6 6 C 1.52993 * 109.47024 * 60.00057 * 4 2 1 7 7 C 1.53008 * 109.46733 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47086 * 299.99706 * 7 6 4 9 9 H 1.08992 * 109.47530 * 299.99942 * 8 7 6 10 10 N 1.46500 * 109.46927 * 179.97438 * 8 7 6 11 11 C 1.34781 * 119.99732 * 85.00287 * 10 8 7 12 12 O 1.21579 * 120.00027 * 0.02562 * 11 10 8 13 13 C 1.47653 * 119.99860 * 179.97438 * 11 10 8 14 14 C 1.40163 * 119.97646 * 359.72976 * 13 11 10 15 15 C 1.36353 * 120.66974 * 179.75033 * 14 13 11 16 16 C 1.39324 * 120.23826 * 0.51967 * 15 14 13 17 17 N 1.37397 * 133.25482 * 179.73542 * 16 15 14 18 18 C 1.36863 * 109.98378 * 180.02562 * 17 16 15 19 19 C 1.34190 * 109.96736 * 0.02562 * 18 17 16 20 20 C 1.50699 * 126.54028 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47225 * 254.95259 * 20 19 18 22 22 Si 1.86299 * 109.47109 * 14.95957 * 20 19 18 23 23 C 1.40911 * 119.63908 * 359.74415 * 16 15 14 24 24 C 1.39196 * 119.97227 * 179.97438 * 13 11 10 25 25 C 1.53002 * 109.46965 * 60.00512 * 8 7 6 26 26 C 1.52996 * 109.46975 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09002 * 109.47722 * 299.99886 * 6 4 2 35 35 H 1.09000 * 109.47250 * 59.99959 * 6 4 2 36 36 H 1.09001 * 109.46630 * 180.02562 * 7 6 4 37 37 H 1.08999 * 109.47300 * 60.00816 * 7 6 4 38 38 H 0.96998 * 120.00364 * 265.00774 * 10 8 7 39 39 H 1.08001 * 119.66438 * 0.02562 * 14 13 11 40 40 H 1.08006 * 119.87931 * 180.26125 * 15 14 13 41 41 H 0.97007 * 125.01068 * 0.03988 * 17 16 15 42 42 H 1.08007 * 125.01679 * 180.02562 * 18 17 16 43 43 H 1.09004 * 109.46663 * 134.95817 * 20 19 18 44 44 H 0.96708 * 113.99318 * 60.00166 * 21 20 19 45 45 H 1.48495 * 110.00415 * 58.67866 * 22 20 19 46 46 H 1.48496 * 109.99742 * 180.02562 * 22 20 19 47 47 H 1.07997 * 120.30422 * 0.02562 * 24 13 11 48 48 H 1.09002 * 109.47067 * 179.97438 * 25 8 7 49 49 H 1.09000 * 109.47312 * 59.99663 * 25 8 7 50 50 H 1.09004 * 109.47368 * 299.99783 * 26 4 2 51 51 H 1.09001 * 109.47372 * 59.99628 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1637 1.2491 7 6 2.0407 -2.8852 2.4980 8 6 3.5707 -2.8852 2.4973 9 1 3.9336 -3.3989 1.6072 10 7 4.0595 -3.5755 3.6935 11 6 4.1882 -4.9171 3.6920 12 8 3.8991 -5.5544 2.6978 13 6 4.6815 -5.6128 4.8973 14 6 5.0210 -4.8769 6.0409 15 6 5.4731 -5.5053 7.1635 16 6 5.6136 -6.8913 7.1833 17 7 6.0381 -7.7809 8.1404 18 6 5.9874 -9.0570 7.6483 19 6 5.5394 -9.0428 6.3835 20 6 5.3384 -10.2391 5.4893 21 8 6.3859 -10.2896 4.5186 22 14 5.3674 -11.7935 6.5158 23 6 5.2808 -7.6419 6.0382 24 6 4.8137 -6.9984 4.8953 25 6 4.0806 -1.4427 2.4974 26 6 3.5700 -0.7207 1.2495 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 0.4401 -2.1638 1.2491 35 1 1.8934 -2.6775 0.3591 36 1 1.6777 -3.9130 2.4977 37 1 1.6776 -2.3716 3.3883 38 1 4.2905 -3.0670 4.4866 39 1 4.9194 -3.8017 6.0344 40 1 5.7271 -4.9260 8.0390 41 1 6.3305 -7.5402 9.0335 42 1 6.2668 -9.9444 8.1969 43 1 4.3770 -10.1563 4.9824 44 1 7.2717 -10.3635 4.8995 45 1 4.3030 -11.7394 7.5498 46 1 5.1709 -12.9806 5.6455 47 1 4.5574 -7.5690 4.0150 48 1 5.1706 -1.4427 2.4974 49 1 3.7177 -0.9290 3.3877 50 1 3.9338 -1.2343 0.3594 51 1 3.9330 0.3071 1.2497 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:52 Heat of formation + Delta-G solvation = -32.037598 kcal Electronic energy + Delta-G solvation = -29685.050340 eV Core-core repulsion = 25742.977606 eV Total energy + Delta-G solvation = -3942.072734 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46439 -41.23288 -39.83740 -37.96683 -37.45024 -36.70960 -34.19149 -33.26782 -31.93227 -31.08694 -30.57359 -29.15081 -28.01412 -26.48082 -25.17534 -23.57231 -23.45540 -23.38882 -21.53337 -21.24439 -20.75561 -20.55257 -19.30710 -18.49820 -17.66715 -17.47130 -16.92583 -16.55359 -16.28034 -15.95325 -15.68939 -15.53105 -15.21467 -15.17682 -15.10111 -14.90574 -14.78248 -14.54386 -14.45044 -14.20493 -14.08578 -13.75524 -13.62847 -13.39364 -13.08250 -12.79483 -12.72190 -12.59296 -12.37265 -12.30442 -12.20331 -12.10349 -12.05092 -11.93561 -11.63016 -11.33425 -11.27683 -10.99036 -10.87295 -10.81276 -10.33688 -10.13278 -9.33559 -8.81280 -5.01960 -0.17415 0.19404 1.34627 1.52294 1.70342 1.82680 2.02368 2.07733 2.13380 2.86850 3.57932 3.61030 3.65246 3.67057 3.71459 3.82078 3.85807 3.91818 4.01775 4.11089 4.13919 4.28479 4.31636 4.35929 4.37094 4.43653 4.49589 4.52801 4.54313 4.59806 4.65167 4.67040 4.77019 4.79355 4.82590 4.98341 5.00727 5.01200 5.03222 5.07763 5.13326 5.17783 5.19588 5.25713 5.27887 5.34189 5.36289 5.36722 5.45565 5.52465 5.54638 5.57000 5.62509 5.97713 6.50232 6.60563 6.86910 7.17614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.111 4.111 7 C -0.123 4.123 8 C 0.146 3.854 9 H 0.059 0.941 10 N -0.708 5.708 11 C 0.558 3.442 12 O -0.590 6.590 13 C -0.179 4.179 14 C -0.068 4.068 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.571 5.571 18 C 0.088 3.912 19 C -0.228 4.228 20 C -0.055 4.055 21 O -0.565 6.565 22 Si 0.814 3.186 23 C -0.130 4.130 24 C -0.026 4.026 25 C -0.117 4.117 26 C -0.112 4.112 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.440 0.560 42 H 0.222 0.778 43 H 0.082 0.918 44 H 0.394 0.606 45 H -0.279 1.279 46 H -0.308 1.308 47 H 0.102 0.898 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.055 0.945 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 3.988 10.056 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.149 4.149 7 C -0.162 4.162 8 C 0.042 3.958 9 H 0.077 0.923 10 N -0.360 5.360 11 C 0.348 3.652 12 O -0.472 6.472 13 C -0.183 4.183 14 C -0.088 4.088 15 C -0.144 4.144 16 C 0.001 3.999 17 N -0.174 5.174 18 C -0.039 4.039 19 C -0.235 4.235 20 C -0.163 4.163 21 O -0.373 6.373 22 Si 0.718 3.282 23 C -0.134 4.134 24 C -0.046 4.046 25 C -0.155 4.155 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.178 0.822 40 H 0.181 0.819 41 H 0.281 0.719 42 H 0.238 0.762 43 H 0.099 0.901 44 H 0.243 0.757 45 H -0.205 1.205 46 H -0.236 1.236 47 H 0.120 0.880 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.074 0.926 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.575 2.942 9.352 10.435 hybrid contribution -0.540 0.376 -0.410 0.775 sum 3.035 3.318 8.942 10.009 Atomic orbital electron populations 1.21908 0.95374 1.01696 1.01825 1.21130 0.95690 0.96476 0.97797 1.21889 1.01443 0.95401 1.01817 1.21182 0.95245 0.94608 0.98398 0.90346 1.21583 1.00814 0.95623 0.96868 1.21850 0.95006 0.99735 0.99572 1.21010 0.93848 0.93536 0.87430 0.92265 1.45857 1.66657 1.05847 1.17592 1.18543 0.76643 0.82775 0.87243 1.90759 1.52715 1.67228 1.36521 1.19598 1.09704 0.93593 0.95427 1.20879 0.96640 1.00676 0.90597 1.20076 1.03877 0.90032 1.00419 1.18620 0.99786 0.92312 0.89201 1.41775 1.56162 1.04637 1.14864 1.22245 0.99567 0.88508 0.93592 1.20856 1.12901 0.92961 0.96787 1.24780 0.92197 1.04356 0.94995 1.86490 1.18773 1.96801 1.35264 0.94036 0.86353 0.70968 0.76810 1.19230 1.05887 0.94245 0.94083 1.20583 0.94229 0.93336 0.96428 1.21757 1.01270 0.92277 1.00181 1.21595 0.95005 1.01199 0.97180 0.92749 0.92414 0.92893 0.92006 0.92367 0.91909 0.93036 0.91183 0.93057 0.94382 0.90462 0.74727 0.82216 0.81898 0.71854 0.76210 0.90087 0.75675 1.20546 1.23638 0.87967 0.90625 0.89440 0.92595 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 8.84 71.98 0.64 0.68 16 2 C -0.09 0.06 2.51 -10.79 -0.03 0.04 16 3 C -0.15 0.29 8.84 71.98 0.64 0.93 16 4 C -0.08 0.10 1.78 -10.80 -0.02 0.08 16 5 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 6 C -0.11 -0.23 4.85 30.59 0.15 -0.08 16 7 C -0.12 -0.46 5.49 30.60 0.17 -0.30 16 8 C 0.15 0.49 2.46 44.99 0.11 0.60 16 9 H 0.06 0.58 7.58 -2.39 -0.02 0.56 16 10 N -0.71 -2.04 5.03 -445.59 -2.24 -4.28 16 11 C 0.56 6.27 7.73 86.73 0.67 6.94 16 12 O -0.59 -12.40 15.99 -3.96 -0.06 -12.46 16 13 C -0.18 -1.44 5.87 -20.09 -0.12 -1.56 16 14 C -0.07 0.03 9.46 22.30 0.21 0.25 16 15 C -0.12 0.32 10.00 22.09 0.22 0.54 16 16 C 0.11 0.07 7.27 39.19 0.28 0.36 16 17 N -0.57 3.55 6.05 -187.48 -1.13 2.42 16 18 C 0.09 -0.51 10.43 82.98 0.87 0.36 16 19 C -0.23 -0.55 5.58 -18.61 -0.10 -0.65 16 20 C -0.05 -0.19 3.06 71.24 0.22 0.03 16 21 O -0.57 -3.04 12.88 -148.98 -1.92 -4.95 16 22 Si 0.81 -2.25 30.76 68.60 2.11 -0.14 16 23 C -0.13 -0.94 6.34 -20.21 -0.13 -1.06 16 24 C -0.03 -0.31 9.64 22.74 0.22 -0.09 16 25 C -0.12 0.33 5.39 30.58 0.16 0.50 16 26 C -0.11 0.24 4.85 30.58 0.15 0.39 16 27 H 0.05 0.03 6.43 -2.39 -0.02 0.01 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.06 -0.18 6.43 -2.39 -0.02 -0.19 16 33 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.07 0.13 6.43 -2.39 -0.02 0.11 16 35 H 0.05 0.24 8.14 -2.39 -0.02 0.23 16 36 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.41 -1.84 6.60 -92.71 -0.61 -2.45 16 39 H 0.16 -1.28 6.36 -2.91 -0.02 -1.30 16 40 H 0.16 -1.60 8.06 -2.91 -0.02 -1.62 16 41 H 0.44 -5.99 8.96 -92.70 -0.83 -6.82 16 42 H 0.22 -3.33 6.35 -2.91 -0.02 -3.34 16 43 H 0.08 0.67 7.96 -2.38 -0.02 0.66 16 44 H 0.39 -1.74 8.70 -74.05 -0.64 -2.38 16 45 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 46 H -0.31 -1.89 7.11 99.48 0.71 -1.18 16 47 H 0.10 1.78 7.64 -2.91 -0.02 1.76 16 48 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.08 -0.36 6.43 -2.39 -0.02 -0.37 16 Total: 0.00 -28.28 396.94 -0.03 -28.31 By element: Atomic # 1 Polarization: -15.74 SS G_CDS: -1.09 Total: -16.82 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.31 Total: 7.94 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -3.37 Total: -1.87 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.98 Total: -17.42 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.11 Total: -0.14 kcal Total: -28.28 -0.03 -28.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.728 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds