Wall clock time and date at job start Sun Mar 7 2021 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 6 6 C 1.52997 * 109.47269 * 60.00164 * 4 2 1 7 7 C 1.53002 * 109.47415 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.46972 * 300.00140 * 7 6 4 9 9 H 1.09004 * 109.47552 * 299.99695 * 8 7 6 10 10 N 1.46500 * 109.46993 * 179.97438 * 8 7 6 11 11 C 1.34784 * 120.00313 * 154.99955 * 10 8 7 12 12 O 1.21516 * 119.99203 * 359.97438 * 11 10 8 13 13 C 1.48161 * 120.00160 * 180.02562 * 11 10 8 14 14 N 1.32720 * 119.72446 * 359.97438 * 13 11 10 15 15 C 1.31518 * 121.64396 * 180.02562 * 14 13 11 16 16 C 1.38569 * 120.90417 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.32522 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47362 * 245.00363 * 17 16 15 19 19 Si 1.86305 * 109.47258 * 5.00697 * 17 16 15 20 20 C 1.38618 * 119.34914 * 359.97438 * 16 15 14 21 21 C 1.38597 * 118.49160 * 359.72947 * 20 16 15 22 22 C 1.53000 * 109.47518 * 59.99713 * 8 7 6 23 23 C 1.52993 * 109.47165 * 300.00244 * 22 8 7 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09002 * 109.47497 * 299.99829 * 6 4 2 32 32 H 1.09000 * 109.47140 * 59.99453 * 6 4 2 33 33 H 1.09000 * 109.46986 * 59.99882 * 7 6 4 34 34 H 1.08996 * 109.47407 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99882 * 334.99952 * 10 8 7 36 36 H 1.08001 * 119.55453 * 180.02562 * 15 14 13 37 37 H 1.08997 * 109.47248 * 124.99894 * 17 16 15 38 38 H 0.96701 * 113.99645 * 60.00399 * 18 17 16 39 39 H 1.48497 * 110.00262 * 179.97438 * 19 17 16 40 40 H 1.48508 * 109.99713 * 301.31731 * 19 17 16 41 41 H 1.08000 * 120.75812 * 179.97438 * 20 16 15 42 42 H 1.07997 * 120.47236 * 180.28883 * 21 20 16 43 43 H 1.09004 * 109.46724 * 59.99475 * 22 8 7 44 44 H 1.08992 * 109.47132 * 179.97438 * 22 8 7 45 45 H 1.09000 * 109.46925 * 299.99717 * 23 22 8 46 46 H 1.08996 * 109.47340 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 6 2.0403 -2.8852 2.4983 8 6 3.5703 -2.8852 2.4977 9 1 3.9334 -3.3989 1.6076 10 7 4.0590 -3.5755 3.6939 11 6 5.2810 -4.1441 3.6920 12 8 5.9771 -4.0845 2.6978 13 6 5.7750 -4.8427 4.9016 14 7 5.0098 -4.9048 5.9842 15 6 5.4106 -5.5147 7.0784 16 6 6.6562 -6.1186 7.1409 17 6 7.1025 -6.8134 8.4015 18 8 8.2241 -6.1222 8.9548 19 14 5.7063 -6.8192 9.6350 20 6 7.4877 -6.0774 6.0326 21 6 7.0366 -5.4333 4.8913 22 6 4.0804 -1.4427 2.4977 23 6 3.5700 -0.7213 1.2489 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 0.4399 -2.1638 1.2492 32 1 1.8933 -2.6775 0.3593 33 1 1.6773 -2.3715 3.3884 34 1 1.6766 -3.9127 2.4985 35 1 3.5031 -3.6233 4.4874 36 1 4.7602 -5.5453 7.9400 37 1 7.3866 -7.8398 8.1696 38 1 8.0434 -5.2007 9.1856 39 1 6.1335 -7.5021 10.8825 40 1 5.2884 -5.4262 9.9356 41 1 8.4632 -6.5402 6.0564 42 1 7.6562 -5.3861 4.0079 43 1 3.7173 -0.9290 3.3879 44 1 5.1703 -1.4428 2.4978 45 1 3.9330 -1.2350 0.3587 46 1 3.9337 0.3062 1.2486 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13287726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:05:56 Heat of formation + Delta-G solvation = -50.545299 kcal Electronic energy + Delta-G solvation = -24949.253780 eV Core-core repulsion = 21418.368392 eV Total energy + Delta-G solvation = -3530.885388 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.95214 -40.82362 -39.64149 -38.02016 -36.74873 -34.44915 -33.55341 -32.96800 -31.92360 -29.70771 -28.00485 -27.62162 -25.07710 -24.46531 -23.47511 -23.27455 -21.75062 -21.25854 -20.61557 -19.23298 -18.70232 -17.92262 -17.07727 -16.76169 -16.61237 -16.26779 -16.15668 -15.95620 -15.37518 -15.18274 -15.12263 -14.73003 -14.51837 -14.39130 -14.36835 -14.22949 -14.13167 -13.49276 -13.38577 -13.07121 -12.80730 -12.67187 -12.63792 -12.30920 -12.13831 -12.09742 -12.04038 -11.63030 -11.51227 -11.31569 -11.09262 -11.04005 -10.94608 -10.69653 -10.65081 -10.39494 -10.06525 -4.92275 -0.61682 0.06487 1.24162 1.52618 1.59222 1.93826 1.96677 2.64272 2.92625 3.33173 3.49080 3.60465 3.65396 3.70401 3.75254 3.82125 3.91170 4.02744 4.10286 4.12563 4.28654 4.32685 4.38098 4.46517 4.50166 4.53637 4.59097 4.64646 4.67765 4.80191 4.83236 4.85750 4.97301 5.01416 5.02406 5.03768 5.08600 5.14350 5.19143 5.20539 5.28825 5.34665 5.37223 5.37835 5.47650 5.55794 5.63651 6.26897 6.41591 6.60651 7.03585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.078 4.078 5 H 0.074 0.926 6 C -0.111 4.111 7 C -0.118 4.118 8 C 0.144 3.856 9 H 0.069 0.931 10 N -0.696 5.696 11 C 0.567 3.433 12 O -0.567 6.567 13 C 0.064 3.936 14 N -0.460 5.460 15 C 0.100 3.900 16 C -0.139 4.139 17 C -0.079 4.079 18 O -0.544 6.544 19 Si 0.767 3.233 20 C -0.052 4.052 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.186 0.814 37 H 0.137 0.863 38 H 0.388 0.612 39 H -0.299 1.299 40 H -0.274 1.274 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -1.039 2.492 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.148 4.148 7 C -0.156 4.156 8 C 0.040 3.960 9 H 0.088 0.912 10 N -0.346 5.346 11 C 0.353 3.647 12 O -0.446 6.446 13 C -0.073 4.073 14 N -0.171 5.171 15 C -0.060 4.060 16 C -0.142 4.142 17 C -0.188 4.188 18 O -0.352 6.352 19 Si 0.671 3.329 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.162 4.162 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.203 0.797 37 H 0.154 0.846 38 H 0.238 0.762 39 H -0.227 1.227 40 H -0.200 1.200 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.672 -0.890 2.389 5.322 hybrid contribution 1.715 0.571 0.325 1.836 sum -2.957 -0.319 2.714 4.027 Atomic orbital electron populations 1.21898 0.94856 1.02154 1.01736 1.21123 0.96013 0.96014 0.97839 1.21909 1.01123 0.96057 1.01741 1.21198 0.94292 0.95825 0.98307 0.90721 1.21596 1.01421 0.94706 0.97122 1.21762 0.91812 1.01960 1.00077 1.21111 0.95287 0.92276 0.87292 0.91241 1.45920 1.16672 1.54244 1.17783 1.18137 0.82102 0.78292 0.86199 1.90785 1.57545 1.61487 1.34801 1.21092 0.93254 0.99773 0.93196 1.67515 1.34660 1.15571 0.99343 1.23067 0.94238 0.92775 0.95914 1.21681 0.95630 0.99146 0.97711 1.25226 0.98465 0.98983 0.96128 1.86617 1.35658 1.30008 1.82924 0.94048 0.80598 0.81352 0.76868 1.21747 1.00496 0.94956 0.90580 1.22285 0.95571 0.95663 1.00282 1.21849 0.99768 0.95052 0.99512 1.21576 0.95821 1.00463 0.96922 0.93004 0.91896 0.92582 0.91699 0.92627 0.92560 0.92888 0.89930 0.92119 0.90047 0.90675 0.74375 0.79744 0.84551 0.76239 1.22729 1.19974 0.82082 0.83471 0.91007 0.93747 0.92495 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 8.84 71.98 0.64 1.00 16 2 C -0.09 0.15 2.51 -10.79 -0.03 0.12 16 3 C -0.15 0.17 8.84 71.98 0.64 0.81 16 4 C -0.08 0.17 1.78 -10.79 -0.02 0.15 16 5 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 6 C -0.11 0.33 4.85 30.59 0.15 0.48 16 7 C -0.12 0.35 5.39 30.59 0.16 0.51 16 8 C 0.14 0.27 2.45 44.99 0.11 0.39 16 9 H 0.07 0.44 7.58 -2.39 -0.02 0.42 16 10 N -0.70 -1.93 5.07 -445.10 -2.25 -4.19 16 11 C 0.57 4.52 7.78 86.88 0.68 5.19 16 12 O -0.57 -8.26 15.99 -3.77 -0.06 -8.32 16 13 C 0.06 0.31 6.75 41.91 0.28 0.59 16 14 N -0.46 -0.87 9.54 -184.91 -1.76 -2.63 16 15 C 0.10 -0.24 9.84 84.82 0.83 0.60 16 16 C -0.14 0.43 5.37 -19.70 -0.11 0.33 16 17 C -0.08 0.40 2.82 71.23 0.20 0.60 16 18 O -0.54 0.85 12.84 -148.98 -1.91 -1.06 16 19 Si 0.77 -4.76 29.91 68.60 2.05 -2.71 16 20 C -0.05 0.07 9.83 22.45 0.22 0.29 16 21 C -0.12 -0.34 9.63 22.61 0.22 -0.12 16 22 C -0.12 -0.26 5.49 30.59 0.17 -0.10 16 23 C -0.11 -0.03 4.85 30.59 0.15 0.12 16 24 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.06 -0.21 6.43 -2.39 -0.02 -0.22 16 26 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 -0.04 6.43 -2.39 -0.02 -0.06 16 30 H 0.05 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.08 -0.37 6.43 -2.39 -0.02 -0.39 16 32 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.42 -0.30 7.93 -92.71 -0.74 -1.04 16 36 H 0.19 -1.39 4.86 -2.91 -0.01 -1.40 16 37 H 0.14 -0.99 7.96 -2.39 -0.02 -1.01 16 38 H 0.39 -2.68 8.70 -74.06 -0.64 -3.32 16 39 H -0.30 -0.63 7.11 99.48 0.71 0.08 16 40 H -0.27 0.83 7.01 99.48 0.70 1.52 16 41 H 0.16 -0.72 8.06 -2.91 -0.02 -0.74 16 42 H 0.15 0.48 7.64 -2.91 -0.02 0.46 16 43 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.07 0.01 6.43 -2.39 -0.02 -0.01 16 Total: 0.00 -14.68 360.62 -0.01 -14.69 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -0.37 Total: -6.74 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.29 Total: 10.96 kcal Atomic # 7 Polarization: -2.80 SS G_CDS: -4.02 Total: -6.82 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.97 Total: -9.39 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.05 Total: -2.71 kcal Total: -14.68 -0.01 -14.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.851 kcal (2) G-P(sol) polarization free energy of solvation -14.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds