Wall clock time and date at job start Sun Mar 7 2021 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 C 1.53002 * 109.47233 * 60.00670 * 4 2 1 7 7 C 1.52997 * 109.47415 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46978 * 300.00098 * 7 6 4 9 9 H 1.09002 * 109.46838 * 299.99316 * 8 7 6 10 10 N 1.46497 * 109.46729 * 179.97438 * 8 7 6 11 11 C 1.34778 * 119.99664 * 155.00120 * 10 8 7 12 12 O 1.21622 * 120.00593 * 359.97438 * 11 10 8 13 13 C 1.47272 * 119.99680 * 179.97438 * 11 10 8 14 14 C 1.36765 * 126.94407 * 0.02562 * 13 11 10 15 15 N 1.34659 * 108.39641 * 179.97438 * 14 13 11 16 16 C 1.46499 * 124.84669 * 180.02562 * 15 14 13 17 17 C 1.36442 * 110.29708 * 0.02562 * 15 14 13 18 18 C 1.50702 * 125.57010 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.47293 * 330.00619 * 18 17 15 20 20 Si 1.86300 * 109.47486 * 210.00029 * 18 17 15 21 21 C 1.34485 * 108.85821 * 359.74808 * 17 15 14 22 22 C 1.53002 * 109.47128 * 59.99726 * 8 7 6 23 23 C 1.52992 * 109.47106 * 300.00123 * 22 8 7 24 24 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 27 27 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 30 30 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 31 31 H 1.09000 * 109.46986 * 299.99797 * 6 4 2 32 32 H 1.09002 * 109.47075 * 59.99068 * 6 4 2 33 33 H 1.09002 * 109.47045 * 59.99931 * 7 6 4 34 34 H 1.08998 * 109.47171 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00413 * 334.99384 * 10 8 7 36 36 H 1.08006 * 125.80040 * 359.97438 * 14 13 11 37 37 H 1.09005 * 109.46491 * 89.98320 * 16 15 14 38 38 H 1.09004 * 109.46778 * 209.97493 * 16 15 14 39 39 H 1.08989 * 109.47907 * 329.98054 * 16 15 14 40 40 H 1.09003 * 109.46822 * 90.00133 * 18 17 15 41 41 H 0.96700 * 113.99816 * 299.99625 * 19 18 17 42 42 H 1.48500 * 110.00197 * 180.02562 * 20 18 17 43 43 H 1.48500 * 109.99923 * 301.32416 * 20 18 17 44 44 H 1.07998 * 126.83456 * 180.24868 * 21 17 15 45 45 H 1.09002 * 109.47070 * 60.00059 * 22 8 7 46 46 H 1.08996 * 109.46550 * 179.97438 * 22 8 7 47 47 H 1.09002 * 109.47103 * 299.99915 * 23 22 8 48 48 H 1.08998 * 109.46862 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 1.5301 -2.1638 1.2493 7 6 2.0405 -2.8852 2.4982 8 6 3.5705 -2.8850 2.4977 9 1 3.9336 -3.3988 1.6076 10 7 4.0592 -3.5753 3.6939 11 6 5.2812 -4.1437 3.6919 12 8 5.9781 -4.0841 2.6969 13 6 5.7727 -4.8371 4.8946 14 6 5.1131 -4.9893 6.0830 15 7 5.9049 -5.6829 6.9227 16 6 5.5507 -6.0496 8.2962 17 6 7.0842 -5.9953 6.3117 18 6 8.2184 -6.7659 6.9371 19 8 8.2333 -6.5317 8.3466 20 14 9.8332 -6.2044 6.1970 21 6 7.0666 -5.5085 5.0582 22 6 4.0804 -1.4425 2.4977 23 6 3.5699 -0.7211 1.2488 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.4401 -2.1638 1.2492 32 1 1.8934 -2.6775 0.3593 33 1 1.6774 -2.3715 3.3884 34 1 1.6769 -3.9127 2.4984 35 1 3.5034 -3.6231 4.4874 36 1 4.1250 -4.6166 6.3094 37 1 5.0534 -7.0196 8.2964 38 1 6.4551 -6.1048 8.9022 39 1 4.8803 -5.2974 8.7117 40 1 8.0824 -7.8306 6.7471 41 1 8.3510 -5.6032 8.5898 42 1 10.9596 -6.9572 6.8050 43 1 9.8181 -6.4133 4.7269 44 1 7.8500 -5.5934 4.3196 45 1 3.7173 -0.9288 3.3879 46 1 5.1704 -1.4425 2.4978 47 1 3.9330 -1.2348 0.3586 48 1 3.9336 0.3064 1.2486 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13287730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:00 Heat of formation + Delta-G solvation = -37.024880 kcal Electronic energy + Delta-G solvation = -25736.775017 eV Core-core repulsion = 22179.164440 eV Total energy + Delta-G solvation = -3557.610577 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48010 -40.89412 -39.51212 -37.81332 -36.60788 -34.20472 -33.63922 -31.89051 -31.51130 -29.44200 -27.99374 -27.42268 -26.28549 -24.38039 -23.44139 -22.97373 -21.34183 -20.91115 -20.70695 -20.35292 -18.98773 -17.49522 -17.12535 -17.02153 -16.76708 -16.19259 -15.84042 -15.54104 -15.42279 -15.31986 -15.09999 -14.94565 -14.73531 -14.49682 -14.35730 -14.18303 -14.05221 -13.46368 -13.34654 -13.25767 -13.06459 -13.03056 -12.73435 -12.63773 -12.26271 -12.16319 -12.09922 -12.06740 -12.01660 -11.60244 -11.30886 -11.22417 -10.94483 -10.81611 -10.70512 -10.06789 -9.57630 -9.22949 -5.00774 0.73562 1.01399 1.37157 1.62071 1.88359 2.05115 2.28652 2.54609 3.28394 3.53373 3.67566 3.72089 3.79280 3.89728 3.96429 4.05674 4.14989 4.31267 4.35166 4.35946 4.38969 4.40877 4.42651 4.51222 4.55760 4.57169 4.67976 4.69812 4.81095 4.82524 4.84471 4.93146 4.98073 5.03184 5.04668 5.08642 5.11382 5.17724 5.21460 5.22776 5.32149 5.38946 5.41301 5.55623 5.57219 5.62643 5.65903 5.95236 6.23842 6.58028 6.66927 7.35817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.112 4.112 7 C -0.116 4.116 8 C 0.148 3.852 9 H 0.056 0.944 10 N -0.712 5.712 11 C 0.586 3.414 12 O -0.599 6.599 13 C -0.261 4.261 14 C 0.076 3.924 15 N -0.421 5.421 16 C 0.045 3.955 17 C -0.014 4.014 18 C -0.033 4.033 19 O -0.543 6.543 20 Si 0.786 3.214 21 C -0.169 4.169 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.211 0.789 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.398 0.602 42 H -0.283 1.283 43 H -0.301 1.301 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 2.658 7.664 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.154 4.154 8 C 0.043 3.957 9 H 0.074 0.926 10 N -0.363 5.363 11 C 0.376 3.624 12 O -0.481 6.481 13 C -0.271 4.271 14 C -0.061 4.061 15 N -0.094 5.094 16 C -0.094 4.094 17 C -0.124 4.124 18 C -0.144 4.144 19 O -0.352 6.352 20 Si 0.691 3.309 21 C -0.194 4.194 22 C -0.160 4.160 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.227 0.773 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.249 0.751 42 H -0.210 1.210 43 H -0.228 1.228 44 H 0.147 0.853 45 H 0.096 0.904 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.266 1.723 6.916 8.307 hybrid contribution -0.376 -0.563 -0.362 0.768 sum -4.642 1.161 6.554 8.115 Atomic orbital electron populations 1.21892 0.94775 1.02105 1.01801 1.21130 0.96073 0.96075 0.97835 1.21905 1.01086 0.95985 1.01809 1.21184 0.94162 0.95736 0.98343 0.90314 1.21603 1.01373 0.94824 0.97216 1.21751 0.91843 1.01768 1.00053 1.20948 0.95028 0.92130 0.87554 0.92563 1.45760 1.16931 1.56243 1.17322 1.17748 0.81122 0.77059 0.86455 1.90745 1.58105 1.62618 1.36635 1.20303 0.98535 1.13008 0.95261 1.22417 0.97760 0.97410 0.88556 1.43728 1.11891 1.40538 1.13273 1.22804 1.05552 1.02674 0.78411 1.20739 0.90696 1.07093 0.93863 1.24669 1.02869 1.01355 0.85525 1.86425 1.95210 1.34094 1.19450 0.93231 0.72847 0.88766 0.76039 1.21719 0.98138 1.03433 0.96077 1.21833 0.99575 0.95194 0.99403 1.21582 0.95921 1.00422 0.96989 0.93080 0.91996 0.92349 0.92069 0.92649 0.92952 0.92389 0.89910 0.92713 0.89458 0.90897 0.75036 0.77280 0.90769 0.86326 0.87337 0.86788 0.75107 1.20993 1.22828 0.85265 0.90447 0.94185 0.93155 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 8.84 71.98 0.64 0.98 16 2 C -0.09 0.11 2.51 -10.79 -0.03 0.08 16 3 C -0.15 0.13 8.84 71.98 0.64 0.77 16 4 C -0.08 0.15 1.78 -10.79 -0.02 0.13 16 5 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 6 C -0.11 0.29 4.85 30.59 0.15 0.44 16 7 C -0.12 0.40 5.39 30.59 0.16 0.56 16 8 C 0.15 0.37 2.45 44.99 0.11 0.48 16 9 H 0.06 0.52 7.58 -2.39 -0.02 0.50 16 10 N -0.71 -1.12 5.07 -445.94 -2.26 -3.38 16 11 C 0.59 5.83 7.77 86.62 0.67 6.50 16 12 O -0.60 -12.11 16.63 -4.10 -0.07 -12.18 16 13 C -0.26 -1.54 6.29 -19.04 -0.12 -1.66 16 14 C 0.08 -0.21 10.83 83.91 0.91 0.70 16 15 N -0.42 1.24 3.09 -533.24 -1.65 -0.40 16 16 C 0.04 -0.42 10.71 127.77 1.37 0.95 16 17 C -0.01 -0.02 6.13 40.98 0.25 0.23 16 18 C -0.03 0.05 2.98 71.24 0.21 0.26 16 19 O -0.54 2.76 9.95 -148.98 -1.48 1.28 16 20 Si 0.79 -0.26 31.31 68.60 2.15 1.89 16 21 C -0.17 -1.26 9.50 23.62 0.22 -1.04 16 22 C -0.12 -0.32 5.49 30.59 0.17 -0.15 16 23 C -0.11 -0.13 4.85 30.59 0.15 0.02 16 24 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.06 -0.19 6.43 -2.39 -0.02 -0.20 16 26 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.05 -0.01 6.43 -2.39 -0.02 -0.03 16 29 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.08 -0.37 6.43 -2.39 -0.02 -0.38 16 32 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.41 -2.51 7.55 -92.71 -0.70 -3.21 16 36 H 0.21 -2.47 7.45 -2.91 -0.02 -2.49 16 37 H 0.07 -0.64 8.14 -2.38 -0.02 -0.66 16 38 H 0.12 -1.19 4.93 -2.38 -0.01 -1.20 16 39 H 0.11 -1.54 8.13 -2.39 -0.02 -1.56 16 40 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 41 H 0.40 -5.01 8.38 -74.06 -0.62 -5.63 16 42 H -0.28 -1.36 7.11 99.48 0.71 -0.66 16 43 H -0.30 -2.37 6.77 99.48 0.67 -1.70 16 44 H 0.13 1.41 6.68 -2.91 -0.02 1.39 16 45 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.05 0.20 8.14 -2.39 -0.02 0.19 16 48 H 0.07 0.06 6.43 -2.39 -0.02 0.04 16 Total: 0.00 -22.35 369.36 1.81 -20.53 By element: Atomic # 1 Polarization: -16.63 SS G_CDS: -0.36 Total: -16.99 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.49 Total: 9.25 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -3.90 Total: -3.78 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -1.55 Total: -10.90 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.15 Total: 1.89 kcal Total: -22.35 1.81 -20.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.490 kcal (2) G-P(sol) polarization free energy of solvation -22.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds