Wall clock time and date at job start Sun Mar 7 2021 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38979 * 119.95523 * 2 1 4 4 O 1.35709 * 119.90873 * 359.97438 * 3 2 1 5 5 C 1.39015 * 120.17583 * 180.02562 * 3 2 1 6 6 C 1.50698 * 119.95530 * 179.97438 * 5 3 2 7 7 O 1.42898 * 109.47093 * 284.99953 * 6 5 3 8 8 Si 1.86301 * 109.47155 * 164.99964 * 6 5 3 9 9 C 1.37685 * 120.08849 * 359.95241 * 5 3 2 10 10 C 1.39750 * 119.90930 * 0.02562 * 9 5 3 11 11 C 1.47608 * 120.08425 * 180.02562 * 10 9 5 12 12 O 1.21585 * 120.00179 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99882 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.46836 * 324.99400 * 14 13 11 16 16 C 1.52998 * 109.47318 * 84.99873 * 14 13 11 17 17 C 1.52993 * 109.47180 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47396 * 299.99914 * 17 16 14 19 19 H 1.08998 * 109.47163 * 300.00100 * 18 17 16 20 20 C 1.52992 * 109.47115 * 179.97438 * 18 17 16 21 21 C 1.52999 * 109.47473 * 60.00311 * 20 18 17 22 22 C 1.53002 * 109.47115 * 179.97438 * 20 18 17 23 23 C 1.52998 * 109.46887 * 59.99906 * 18 17 16 24 24 C 1.52998 * 109.46999 * 204.99787 * 14 13 11 25 25 C 1.37718 * 119.95692 * 179.72436 * 2 1 3 26 26 H 1.09002 * 109.47152 * 90.00151 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00251 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00232 * 1 2 3 29 29 H 0.96693 * 114.00620 * 90.00566 * 4 3 2 30 30 H 1.09001 * 109.46929 * 44.99883 * 6 5 3 31 31 H 0.96701 * 113.99986 * 299.99715 * 7 6 5 32 32 H 1.48499 * 109.99976 * 179.97438 * 8 6 5 33 33 H 1.48499 * 109.99875 * 301.31651 * 8 6 5 34 34 H 1.08000 * 120.04385 * 180.02562 * 9 5 3 35 35 H 0.97000 * 120.00178 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.47076 * 300.00013 * 16 14 13 37 37 H 1.08998 * 109.47061 * 60.00107 * 16 14 13 38 38 H 1.09002 * 109.47210 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.47394 * 59.99484 * 17 16 14 40 40 H 1.09004 * 109.47749 * 299.99615 * 20 18 17 41 41 H 1.09001 * 109.46886 * 299.99720 * 21 20 18 42 42 H 1.09002 * 109.46708 * 59.99110 * 21 20 18 43 43 H 1.09000 * 109.47712 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46994 * 60.00067 * 22 20 18 45 45 H 1.08999 * 109.47593 * 179.97438 * 22 20 18 46 46 H 1.09007 * 109.47394 * 300.00293 * 22 20 18 47 47 H 1.09001 * 109.47076 * 180.02562 * 23 18 17 48 48 H 1.09001 * 109.47553 * 60.00272 * 23 18 17 49 49 H 1.08998 * 109.47372 * 299.99888 * 24 14 13 50 50 H 1.09002 * 109.47122 * 59.99798 * 24 14 13 51 51 H 1.08005 * 120.04651 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2095 -0.0005 6 6 4.3386 2.5180 -0.0011 7 8 4.2715 3.1043 -1.3026 8 14 6.1200 2.2159 0.4529 9 6 4.2860 0.0208 -0.0001 10 6 3.5918 -1.1921 0.0004 11 6 4.3329 -2.4687 0.0014 12 8 5.5487 -2.4659 0.0014 13 7 3.6617 -3.6375 0.0024 14 6 4.3972 -4.9045 0.0040 15 1 5.3078 -4.7968 -0.5853 16 6 4.7614 -5.2810 1.4415 17 6 5.5300 -6.6039 1.4431 18 6 4.6561 -7.7022 0.8341 19 1 3.7454 -7.8104 1.4232 20 6 5.4250 -9.0249 0.8352 21 6 5.7897 -9.4018 2.2725 22 6 4.5509 -10.1234 0.2268 23 6 4.2919 -7.3258 -0.6034 24 6 3.5227 -6.0025 -0.6047 25 6 2.1947 -1.1932 0.0057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.3219 2.7183 0.8826 30 1 3.8880 3.1941 0.7256 31 1 4.6550 2.5564 -2.0010 32 1 6.8681 3.4987 0.4552 33 1 6.2017 1.5772 1.7910 34 1 5.3660 0.0258 -0.0001 35 1 2.6917 -3.6397 0.0028 36 1 5.3844 -4.4987 1.8752 37 1 3.8507 -5.3888 2.0307 38 1 5.7899 -6.8718 2.4672 39 1 6.4407 -6.4957 0.8539 40 1 6.3355 -8.9165 0.2457 41 1 6.4123 -8.6193 2.7063 42 1 4.8792 -9.5102 2.8618 43 1 6.3371 -10.3443 2.2733 44 1 4.2906 -9.8553 -0.7972 45 1 5.0987 -11.0657 0.2271 46 1 3.6405 -10.2318 0.8165 47 1 3.6689 -8.1080 -1.0371 48 1 5.2025 -7.2176 -1.1926 49 1 2.6121 -6.1103 -0.0155 50 1 3.2632 -5.7343 -1.6289 51 1 1.6548 -2.1286 0.0098 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13287732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:04 Heat of formation + Delta-G solvation = -110.541284 kcal Electronic energy + Delta-G solvation = -29389.317132 eV Core-core repulsion = 25447.036223 eV Total energy + Delta-G solvation = -3942.280909 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79019 -40.82652 -39.68506 -37.87156 -37.52098 -36.69843 -34.30579 -33.93165 -31.89123 -31.86911 -29.34673 -28.00614 -27.99615 -26.88992 -25.12922 -23.45731 -23.43047 -22.07164 -21.47058 -21.07522 -20.57025 -19.58938 -18.76227 -18.09785 -17.58255 -16.86695 -16.60907 -16.46292 -16.06441 -15.86888 -15.57499 -15.37338 -15.13622 -15.06061 -14.73328 -14.53939 -14.39788 -14.34512 -14.19551 -14.14102 -13.92773 -13.36528 -13.28175 -13.06822 -12.93287 -12.84817 -12.74339 -12.62723 -12.37368 -12.27062 -12.21491 -12.07814 -12.01743 -11.63809 -11.59605 -11.30864 -11.25465 -10.96665 -10.85121 -10.47749 -10.15157 -9.96981 -9.65955 -5.06353 -0.40313 0.06407 1.19808 1.52734 1.63321 1.83363 2.04276 2.57098 3.09427 3.36276 3.53376 3.56796 3.67569 3.71629 3.74201 3.82727 4.00507 4.05766 4.13816 4.15772 4.30749 4.33349 4.34675 4.40502 4.42848 4.53185 4.56605 4.60760 4.67552 4.68853 4.70981 4.80015 4.82595 4.83882 5.00507 5.03266 5.03785 5.04891 5.09221 5.11161 5.16672 5.18344 5.21666 5.22582 5.31038 5.31272 5.38290 5.39135 5.50317 5.56928 5.59039 5.65183 6.46552 6.68206 6.70063 7.13515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C 0.153 3.847 4 O -0.495 6.495 5 C -0.159 4.159 6 C -0.051 4.051 7 O -0.548 6.548 8 Si 0.742 3.258 9 C -0.057 4.057 10 C -0.150 4.150 11 C 0.558 3.442 12 O -0.574 6.574 13 N -0.708 5.708 14 C 0.147 3.853 15 H 0.067 0.933 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.077 4.077 19 H 0.076 0.924 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.055 4.055 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.409 0.591 30 H 0.113 0.887 31 H 0.392 0.608 32 H -0.287 1.287 33 H -0.291 1.291 34 H 0.141 0.859 35 H 0.413 0.587 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -4.709 0.126 7.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C 0.107 3.893 4 O -0.309 6.309 5 C -0.160 4.160 6 C -0.162 4.162 7 O -0.355 6.355 8 Si 0.648 3.352 9 C -0.075 4.075 10 C -0.153 4.153 11 C 0.347 3.653 12 O -0.454 6.454 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.085 0.915 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.095 4.095 19 H 0.094 0.906 20 C -0.111 4.111 21 C -0.208 4.208 22 C -0.206 4.206 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.073 4.073 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.269 0.731 30 H 0.130 0.870 31 H 0.241 0.759 32 H -0.214 1.214 33 H -0.217 1.217 34 H 0.158 0.842 35 H 0.252 0.748 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.536 -4.136 0.416 6.153 hybrid contribution -0.509 0.447 0.850 1.087 sum -5.044 -3.690 1.267 6.377 Atomic orbital electron populations 1.20746 0.88281 1.04163 1.03373 1.20445 0.98325 0.91760 1.01674 1.18489 0.88793 0.85885 0.96089 1.84767 1.75517 1.35716 1.34872 1.20635 0.94257 0.95706 1.05400 1.24815 1.09047 0.92964 0.89406 1.86507 1.84851 1.47626 1.16539 0.93775 0.76285 0.80797 0.84345 1.20999 1.00000 0.90666 0.95832 1.19842 0.94333 0.92737 1.08397 1.18364 0.86859 0.84510 0.75590 1.90786 1.15047 1.88073 1.51526 1.45907 1.11028 1.04858 1.74198 1.21032 0.95688 0.82347 0.96692 0.91461 1.21852 1.00740 0.97249 0.96383 1.21578 0.98275 0.93657 1.01388 1.21190 0.98450 0.93421 0.96487 0.90597 1.21128 0.98581 0.94718 0.96632 1.21910 1.01459 1.01142 0.96325 1.21898 0.99698 0.97916 1.01117 1.21607 1.00432 0.96479 0.96458 1.21780 0.98678 0.93460 1.01705 1.21367 0.91733 0.98981 0.95267 0.90578 0.90856 0.89384 0.73090 0.86959 0.75851 1.21388 1.21726 0.84200 0.74845 0.93828 0.90724 0.91327 0.92719 0.91840 0.92597 0.92568 0.92998 0.91894 0.93122 0.92516 0.90048 0.92313 0.89732 0.90553 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.66 9.79 71.24 0.70 1.36 16 2 C -0.12 0.26 5.89 -19.81 -0.12 0.14 16 3 C 0.15 0.14 6.66 22.63 0.15 0.29 16 4 O -0.50 -0.07 11.84 -90.30 -1.07 -1.14 16 5 C -0.16 -0.32 5.27 -19.81 -0.10 -0.42 16 6 C -0.05 -0.10 2.37 71.24 0.17 0.07 16 7 O -0.55 -1.90 12.88 -148.98 -1.92 -3.82 16 8 Si 0.74 1.83 29.91 68.60 2.05 3.88 16 9 C -0.06 -0.17 8.20 22.50 0.18 0.01 16 10 C -0.15 -0.25 5.87 -20.08 -0.12 -0.37 16 11 C 0.56 2.53 7.73 86.72 0.67 3.20 16 12 O -0.57 -7.23 16.00 -3.98 -0.06 -7.30 16 13 N -0.71 1.38 5.03 -445.62 -2.24 -0.86 16 14 C 0.15 -0.14 2.45 44.99 0.11 -0.03 16 15 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 16 C -0.12 0.01 5.49 30.59 0.17 0.18 16 17 C -0.11 0.11 4.85 30.59 0.15 0.26 16 18 C -0.08 0.27 1.78 -10.80 -0.02 0.25 16 19 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 20 C -0.09 0.23 2.51 -10.80 -0.03 0.20 16 21 C -0.15 0.28 8.84 71.98 0.64 0.91 16 22 C -0.15 0.48 8.84 71.98 0.64 1.12 16 23 C -0.11 0.52 4.85 30.61 0.15 0.67 16 24 C -0.12 0.69 5.40 30.61 0.17 0.85 16 25 C -0.05 0.19 9.18 22.50 0.21 0.40 16 26 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.07 -0.45 7.52 -2.39 -0.02 -0.47 16 28 H 0.09 -0.85 8.08 -2.38 -0.02 -0.87 16 29 H 0.41 -3.42 9.06 -74.06 -0.67 -4.09 16 30 H 0.11 0.15 7.82 -2.39 -0.02 0.13 16 31 H 0.39 -1.48 8.70 -74.06 -0.64 -2.13 16 32 H -0.29 -2.43 7.11 99.48 0.71 -1.72 16 33 H -0.29 -2.40 7.11 99.48 0.71 -1.70 16 34 H 0.14 0.44 4.70 -2.91 -0.01 0.42 16 35 H 0.41 -3.48 6.62 -92.71 -0.61 -4.10 16 36 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.07 -0.06 6.43 -2.39 -0.02 -0.07 16 39 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 41 H 0.06 -0.08 6.43 -2.39 -0.02 -0.09 16 42 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.06 -0.26 6.43 -2.39 -0.02 -0.28 16 45 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 47 H 0.08 -0.49 6.43 -2.39 -0.02 -0.50 16 48 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.08 -0.72 8.14 -2.39 -0.02 -0.73 16 50 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 51 H 0.16 -1.69 6.39 -2.91 -0.02 -1.71 16 Total: 0.00 -19.32 393.88 -0.47 -19.79 By element: Atomic # 1 Polarization: -18.72 SS G_CDS: -0.94 Total: -19.66 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 3.71 Total: 9.10 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.24 Total: -0.86 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -3.05 Total: -12.25 kcal Atomic # 14 Polarization: 1.83 SS G_CDS: 2.05 Total: 3.88 kcal Total: -19.32 -0.47 -19.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.751 kcal (2) G-P(sol) polarization free energy of solvation -19.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds