Wall clock time and date at job start Sun Mar 7 2021 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 6 6 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 7 7 C 1.52993 * 109.47066 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47347 * 299.99927 * 7 6 4 9 9 H 1.09002 * 109.47045 * 300.00186 * 8 7 6 10 10 N 1.46500 * 109.47204 * 180.02562 * 8 7 6 11 11 C 1.34782 * 119.99783 * 154.99869 * 10 8 7 12 12 O 1.21549 * 120.00040 * 359.97438 * 11 10 8 13 13 C 1.47842 * 119.99919 * 180.02562 * 11 10 8 14 14 C 1.39526 * 120.55681 * 359.97438 * 13 11 10 15 15 N 1.31700 * 120.56442 * 180.02562 * 14 13 11 16 16 C 1.31929 * 121.87986 * 0.02562 * 15 14 13 17 17 C 1.38348 * 121.07658 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.34557 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47057 * 245.00323 * 18 17 16 20 20 Si 1.86298 * 109.46996 * 5.00027 * 18 17 16 21 21 C 1.38357 * 119.30807 * 359.71991 * 17 16 15 22 22 C 1.52997 * 109.47232 * 60.00244 * 8 7 6 23 23 C 1.53002 * 109.47143 * 300.00043 * 22 8 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08996 * 109.46698 * 300.00222 * 6 4 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 6 4 2 33 33 H 1.09002 * 109.47726 * 60.00012 * 7 6 4 34 34 H 1.09000 * 109.46925 * 179.97438 * 7 6 4 35 35 H 0.96997 * 120.00274 * 335.00160 * 10 8 7 36 36 H 1.07999 * 119.72140 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.45744 * 179.97438 * 16 15 14 38 38 H 1.08998 * 109.47493 * 124.99843 * 18 17 16 39 39 H 0.96693 * 114.00362 * 59.99486 * 19 18 17 40 40 H 1.48504 * 110.00138 * 180.02562 * 20 18 17 41 41 H 1.48503 * 109.99928 * 301.31947 * 20 18 17 42 42 H 1.07996 * 120.85783 * 180.29658 * 21 17 16 43 43 H 1.09002 * 109.47153 * 60.00008 * 22 8 7 44 44 H 1.09004 * 109.47261 * 180.02562 * 22 8 7 45 45 H 1.09002 * 109.47067 * 300.00018 * 23 22 8 46 46 H 1.08992 * 109.47461 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7219 -1.2489 7 6 4.0799 -1.4426 -2.4985 8 6 3.5694 -2.8849 -2.4994 9 1 3.9324 -3.3993 -1.6096 10 7 4.0582 -3.5751 -3.6956 11 6 4.1864 -4.9168 -3.6943 12 8 3.8970 -5.5540 -2.7005 13 6 4.6802 -5.6134 -4.9012 14 6 5.0163 -4.8934 -6.0481 15 7 5.4557 -5.5138 -7.1235 16 6 5.5950 -6.8251 -7.1634 17 6 5.2822 -7.6101 -6.0680 18 6 5.4482 -9.1067 -6.1315 19 8 4.1684 -9.7330 -6.0213 20 14 6.2316 -9.5762 -7.7552 21 6 4.8214 -7.0064 -4.9115 22 6 2.0394 -2.8843 -2.4997 23 6 1.5294 -2.1636 -1.2501 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.3056 -1.2487 32 1 3.9330 -1.2359 -0.3589 33 1 3.7170 -0.9282 -3.3883 34 1 5.1699 -1.4426 -2.4985 35 1 4.2895 -3.0666 -4.4885 36 1 4.9145 -3.8182 -6.0544 37 1 5.9584 -7.2934 -8.0662 38 1 6.0860 -9.4367 -5.3115 39 1 3.5476 -9.4848 -6.7198 40 1 6.4002 -11.0498 -7.8305 41 1 5.3873 -9.1039 -8.8819 42 1 4.5744 -7.5946 -4.0402 43 1 1.6764 -2.3698 -3.3895 44 1 1.6757 -3.9119 -2.4999 45 1 1.8924 -2.6781 -0.3604 46 1 0.4395 -2.1628 -1.2505 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13287814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:13 Heat of formation + Delta-G solvation = -50.848036 kcal Electronic energy + Delta-G solvation = -25039.853147 eV Core-core repulsion = 21508.954631 eV Total energy + Delta-G solvation = -3530.898516 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98595 -40.83772 -39.64308 -38.08978 -36.76777 -34.46011 -33.80964 -32.92030 -31.92129 -29.53136 -28.01196 -27.30808 -25.90189 -23.98673 -23.54414 -23.47642 -21.61785 -21.19814 -20.60413 -19.26968 -18.27967 -17.98656 -17.80461 -17.01171 -16.55033 -16.44708 -16.02247 -15.86080 -15.39010 -15.17406 -15.03043 -14.76116 -14.48942 -14.43941 -14.39782 -14.25132 -14.14869 -13.46567 -13.38479 -13.07800 -12.83520 -12.79371 -12.67578 -12.30497 -12.11243 -12.09385 -12.04130 -11.63156 -11.52755 -11.32007 -11.12130 -11.03822 -10.94874 -10.70575 -10.56987 -10.41273 -10.10260 -4.94942 -0.59220 -0.05217 1.21250 1.56643 1.63665 1.90259 1.97809 2.60721 3.08578 3.31434 3.39018 3.61107 3.65085 3.66196 3.70255 3.72155 3.81991 4.01974 4.07943 4.11032 4.25050 4.30033 4.32333 4.37962 4.49593 4.52247 4.53927 4.64816 4.67253 4.79686 4.81501 4.82738 4.89488 5.01399 5.01787 5.03326 5.08598 5.14022 5.18930 5.20167 5.28515 5.29912 5.34682 5.37404 5.46775 5.55282 5.63208 6.36001 6.39683 6.63271 7.03162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.112 4.112 7 C -0.119 4.119 8 C 0.147 3.853 9 H 0.065 0.935 10 N -0.705 5.705 11 C 0.563 3.437 12 O -0.575 6.575 13 C -0.197 4.197 14 C 0.148 3.852 15 N -0.493 5.493 16 C 0.128 3.872 17 C -0.173 4.173 18 C -0.084 4.084 19 O -0.547 6.547 20 Si 0.777 3.223 21 C -0.003 4.003 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.192 0.808 37 H 0.183 0.817 38 H 0.128 0.872 39 H 0.388 0.612 40 H -0.298 1.298 41 H -0.270 1.270 42 H 0.135 0.865 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 5.200 -3.330 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.043 3.957 9 H 0.084 0.916 10 N -0.357 5.357 11 C 0.350 3.650 12 O -0.456 6.456 13 C -0.202 4.202 14 C -0.011 4.011 15 N -0.201 5.201 16 C -0.028 4.028 17 C -0.175 4.175 18 C -0.192 4.192 19 O -0.356 6.356 20 Si 0.680 3.320 21 C -0.029 4.029 22 C -0.162 4.162 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.209 0.791 37 H 0.200 0.800 38 H 0.146 0.854 39 H 0.237 0.763 40 H -0.226 1.226 41 H -0.196 1.196 42 H 0.153 0.847 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.755 4.581 -3.575 6.431 hybrid contribution -1.581 -0.681 0.819 1.906 sum 1.174 3.901 -2.756 4.918 Atomic orbital electron populations 1.21910 0.95443 1.01726 1.01760 1.21126 0.95627 0.96417 0.97902 1.21893 1.01460 0.95510 1.01751 1.21196 0.95320 0.94745 0.98290 0.90486 1.21599 0.94920 1.01212 0.97268 1.21777 1.01411 0.92342 1.00117 1.21050 0.93866 0.93527 0.87289 0.91629 1.45897 1.66187 1.05752 1.17840 1.18248 0.77075 0.82849 0.86788 1.90795 1.51901 1.66981 1.35876 1.21013 1.07455 0.95291 0.96427 1.23454 0.89866 1.01558 0.86186 1.67827 1.13707 1.10923 1.27600 1.23272 0.92381 0.89434 0.97682 1.21353 1.02996 0.98395 0.94767 1.25310 0.89726 0.88228 1.15968 1.86617 1.24060 1.70207 1.54679 0.94020 0.87125 0.79093 0.71748 1.21656 0.90080 0.93253 0.97922 1.21857 0.94914 0.99938 0.99533 1.21582 1.00817 0.95524 0.96998 0.92517 0.92975 0.92644 0.91902 0.93114 0.91875 0.92465 0.89911 0.92388 0.89517 0.90424 0.74661 0.79132 0.80023 0.85435 0.76297 1.22625 1.19616 0.84674 0.90527 0.93989 0.92828 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 8.84 71.98 0.64 0.87 16 2 C -0.09 0.20 2.51 -10.80 -0.03 0.17 16 3 C -0.15 0.45 8.84 71.98 0.64 1.09 16 4 C -0.08 0.25 1.77 -10.79 -0.02 0.23 16 5 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 6 C -0.11 0.49 4.85 30.59 0.15 0.64 16 7 C -0.12 0.67 5.39 30.59 0.16 0.83 16 8 C 0.15 -0.08 2.45 44.99 0.11 0.03 16 9 H 0.07 0.33 7.58 -2.39 -0.02 0.31 16 10 N -0.71 1.24 5.03 -445.41 -2.24 -1.00 16 11 C 0.56 2.88 7.75 86.78 0.67 3.55 16 12 O -0.58 -8.14 16.08 -3.87 -0.06 -8.20 16 13 C -0.20 -0.41 5.89 -19.99 -0.12 -0.53 16 14 C 0.15 -0.31 10.71 85.02 0.91 0.60 16 15 N -0.49 -0.11 10.35 -194.75 -2.01 -2.13 16 16 C 0.13 -0.22 9.84 84.70 0.83 0.61 16 17 C -0.17 0.08 5.35 -19.81 -0.11 -0.02 16 18 C -0.08 0.15 2.82 71.24 0.20 0.35 16 19 O -0.55 -1.18 12.84 -148.98 -1.91 -3.09 16 20 Si 0.78 -3.55 29.91 68.60 2.05 -1.50 16 21 C 0.00 -0.01 9.38 22.73 0.21 0.20 16 22 C -0.12 -0.05 5.50 30.59 0.17 0.12 16 23 C -0.11 0.06 4.85 30.60 0.15 0.21 16 24 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 25 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.05 -0.06 6.43 -2.38 -0.02 -0.07 16 27 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.08 -0.48 6.43 -2.39 -0.02 -0.50 16 32 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 33 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.42 -3.57 6.67 -92.71 -0.62 -4.18 16 36 H 0.19 -1.82 6.42 -2.91 -0.02 -1.84 16 37 H 0.18 -1.19 4.85 -2.91 -0.01 -1.20 16 38 H 0.13 -0.37 7.96 -2.39 -0.02 -0.39 16 39 H 0.39 -1.51 8.70 -74.06 -0.64 -2.15 16 40 H -0.30 -1.05 7.11 99.48 0.71 -0.35 16 41 H -0.27 0.54 7.01 99.48 0.70 1.24 16 42 H 0.14 0.86 7.74 -2.91 -0.02 0.84 16 43 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.04 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.07 -0.03 6.43 -2.39 -0.02 -0.04 16 Total: 0.00 -17.89 358.41 0.15 -17.74 By element: Atomic # 1 Polarization: -10.54 SS G_CDS: -0.24 Total: -10.78 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.57 Total: 8.96 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -4.26 Total: -3.13 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.98 Total: -11.29 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.05 Total: -1.50 kcal Total: -17.89 0.15 -17.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13287814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.109 kcal (2) G-P(sol) polarization free energy of solvation -17.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds