Wall clock time and date at job start Sun Mar 7 2021 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36414 * 125.80222 * 2 1 4 4 C 1.47386 * 127.19142 * 0.02562 * 3 2 1 5 5 O 1.21612 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00209 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00161 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.47004 * 34.99845 * 7 6 4 9 9 C 1.52998 * 109.47305 * 154.99961 * 7 6 4 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47163 * 300.00203 * 10 9 7 12 12 H 1.08997 * 109.47373 * 299.99915 * 11 10 9 13 13 C 1.53006 * 109.47182 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.46790 * 59.99986 * 13 11 10 15 15 C 1.53004 * 109.47059 * 179.97438 * 13 11 10 16 16 C 1.52999 * 109.47270 * 60.00067 * 11 10 9 17 17 C 1.53004 * 109.46923 * 275.00038 * 7 6 4 18 18 C 1.47012 * 105.61847 * 180.02562 * 3 2 1 19 19 C 1.34178 * 105.95357 * 359.97438 * 18 3 2 20 20 C 1.50706 * 125.43605 * 179.97438 * 19 18 3 21 21 O 1.42903 * 109.47186 * 65.00390 * 20 19 18 22 22 Si 1.86302 * 109.46768 * 185.00070 * 20 19 18 23 23 O 1.33654 * 125.80412 * 180.32900 * 2 1 3 24 24 H 1.09001 * 109.47426 * 89.99652 * 1 2 3 25 25 H 1.09004 * 109.46850 * 210.00254 * 1 2 3 26 26 H 1.09000 * 109.47164 * 329.99822 * 1 2 3 27 27 H 0.97002 * 119.99313 * 0.02562 * 6 4 3 28 28 H 1.09006 * 109.47344 * 300.00003 * 9 7 6 29 29 H 1.09004 * 109.46767 * 59.99776 * 9 7 6 30 30 H 1.09008 * 109.46861 * 59.99956 * 10 9 7 31 31 H 1.09004 * 109.47190 * 179.97438 * 10 9 7 32 32 H 1.08991 * 109.47173 * 299.99859 * 13 11 10 33 33 H 1.08997 * 109.47047 * 60.00312 * 14 13 11 34 34 H 1.09007 * 109.46634 * 179.97438 * 14 13 11 35 35 H 1.08993 * 109.47369 * 299.99581 * 14 13 11 36 36 H 1.09003 * 109.46702 * 299.99711 * 15 13 11 37 37 H 1.08992 * 109.47174 * 60.00220 * 15 13 11 38 38 H 1.08998 * 109.46825 * 180.02562 * 15 13 11 39 39 H 1.08991 * 109.47366 * 59.99969 * 16 11 10 40 40 H 1.09002 * 109.47412 * 180.02562 * 16 11 10 41 41 H 1.08991 * 109.47045 * 299.99868 * 17 7 6 42 42 H 1.09001 * 109.46950 * 60.00087 * 17 7 6 43 43 H 1.08006 * 127.02785 * 180.02562 * 18 3 2 44 44 H 1.08992 * 109.47155 * 304.99987 * 20 19 18 45 45 H 0.96699 * 114.00071 * 179.97438 * 21 20 19 46 46 H 1.48503 * 110.00170 * 300.00296 * 22 20 19 47 47 H 1.48497 * 109.99882 * 61.31949 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7891 0.0015 6 7 2.7930 3.5016 -0.0001 7 6 2.3645 4.9025 0.0010 8 1 1.4538 5.0035 0.5915 9 6 3.4661 5.7724 0.6098 10 6 3.0189 7.2355 0.6103 11 6 2.7483 7.6866 -0.8263 12 1 3.6590 7.5853 -1.4166 13 6 2.3005 9.1497 -0.8257 14 6 3.4018 10.0198 -0.2168 15 6 2.0305 9.6010 -2.2625 16 6 1.6466 6.8169 -1.4351 17 6 2.0935 5.3540 -1.4355 18 6 3.6848 0.5991 -0.0006 19 6 3.5859 -0.7390 -0.0004 20 6 4.7460 -1.7010 -0.0014 21 8 5.4772 -1.5666 1.2190 22 14 4.1068 -3.4443 -0.1536 23 8 2.2889 -1.0839 -0.0062 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.7381 3.2834 -0.0012 28 1 3.6592 5.4507 1.6332 29 1 4.3768 5.6713 0.0193 30 1 2.1081 7.3368 1.2006 31 1 3.8036 7.8551 1.0445 32 1 1.3897 9.2506 -0.2356 33 1 4.3126 9.9189 -0.8069 34 1 3.0829 11.0622 -0.2167 35 1 3.5945 9.6985 0.8068 36 1 2.9417 9.5002 -2.8522 37 1 1.2461 8.9811 -2.6967 38 1 1.7119 10.6433 -2.2621 39 1 0.7359 6.9181 -0.8449 40 1 1.4541 7.1379 -2.4588 41 1 3.0041 5.2531 -2.0260 42 1 1.3086 4.7343 -1.8692 43 1 4.5928 1.1840 -0.0004 44 1 5.4010 -1.4793 -0.8438 45 1 6.2397 -2.1574 1.2877 46 1 3.2122 -3.7589 0.9891 47 1 3.3716 -3.6056 -1.4337 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13308374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:17 Heat of formation + Delta-G solvation = -76.510499 kcal Electronic energy + Delta-G solvation = -25966.481299 eV Core-core repulsion = 22309.439835 eV Total energy + Delta-G solvation = -3657.041464 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.182 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.92810 -41.12455 -39.70016 -37.90436 -36.74179 -34.61333 -33.89183 -33.25637 -31.94251 -30.00110 -29.13053 -28.01763 -25.95390 -24.66466 -23.50567 -23.49614 -22.08789 -21.43230 -20.70899 -20.43967 -18.75654 -18.47012 -17.46016 -17.42992 -17.14635 -16.42929 -15.95307 -15.84036 -15.73516 -15.28646 -15.16049 -14.88709 -14.55270 -14.49336 -14.37672 -14.24871 -14.18317 -14.13391 -13.98388 -13.40229 -13.18379 -13.08327 -12.80274 -12.68296 -12.62307 -12.31838 -12.22691 -12.11578 -12.05901 -11.64144 -11.35683 -11.32308 -11.07380 -11.00655 -10.90536 -10.47809 -10.14199 -9.69663 -5.10120 0.07430 0.70550 1.15242 1.39084 1.62552 2.00202 2.06522 2.14684 3.12886 3.55271 3.59968 3.64470 3.65887 3.69067 3.79616 4.01046 4.02340 4.10090 4.22754 4.27172 4.31067 4.35497 4.36321 4.42019 4.47793 4.51654 4.53285 4.62341 4.65988 4.67978 4.78288 4.82171 4.96451 4.99844 5.01328 5.03350 5.07228 5.09544 5.13228 5.17142 5.18762 5.27458 5.35392 5.36103 5.47655 5.54113 5.61884 5.75801 6.42129 6.83863 7.08500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.073 3.927 3 C -0.264 4.264 4 C 0.590 3.410 5 O -0.573 6.573 6 N -0.707 5.707 7 C 0.148 3.852 8 H 0.066 0.934 9 C -0.118 4.118 10 C -0.111 4.111 11 C -0.077 4.077 12 H 0.076 0.924 13 C -0.092 4.092 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.139 4.139 19 C -0.037 4.037 20 C -0.035 4.035 21 O -0.559 6.559 22 Si 0.805 3.195 23 O -0.193 6.193 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.412 0.588 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.187 0.813 44 H 0.131 0.869 45 H 0.414 0.586 46 H -0.310 1.310 47 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 -0.960 -1.189 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.021 3.979 3 C -0.268 4.268 4 C 0.378 3.622 5 O -0.454 6.454 6 N -0.357 5.357 7 C 0.044 3.956 8 H 0.084 0.916 9 C -0.156 4.156 10 C -0.149 4.149 11 C -0.095 4.095 12 H 0.094 0.906 13 C -0.110 4.110 14 C -0.206 4.206 15 C -0.208 4.208 16 C -0.148 4.148 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.084 4.084 20 C -0.144 4.144 21 O -0.371 6.371 22 Si 0.712 3.288 23 O -0.092 6.092 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.249 0.751 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.205 0.795 44 H 0.148 0.852 45 H 0.268 0.732 46 H -0.238 1.238 47 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 5.856 -1.107 -1.148 6.070 hybrid contribution -0.128 0.474 -0.038 0.493 sum 5.728 -0.633 -1.186 5.884 Atomic orbital electron populations 1.20706 0.82569 1.05424 1.05248 1.23312 0.94902 0.83061 0.96664 1.21303 0.94243 0.93637 1.17634 1.17293 0.85353 0.84208 0.75299 1.90747 1.17932 1.84461 1.52305 1.45788 1.09960 1.05663 1.74304 1.21039 0.98623 0.79075 0.96868 0.91621 1.21767 0.97573 0.94777 1.01507 1.21595 1.01960 0.94696 0.96633 1.21192 0.98381 0.93631 0.96340 0.90574 1.21125 0.98803 0.94355 0.96741 1.21896 0.98411 0.99250 1.01078 1.21907 1.01702 1.00974 0.96224 1.21570 0.98428 0.93300 1.01504 1.21836 1.01400 0.96682 0.96164 1.22853 0.96554 0.93220 1.03163 1.21870 0.82269 0.95537 1.08761 1.23939 0.91401 1.07048 0.92002 1.86412 1.47117 1.67277 1.36316 0.94388 0.82915 0.75724 0.75775 1.83695 1.17500 1.35853 1.72118 0.88186 0.88930 0.88021 0.75090 0.90896 0.89816 0.92330 0.89941 0.91824 0.92490 0.93004 0.91968 0.92533 0.92579 0.92893 0.92699 0.91105 0.90841 0.93838 0.79546 0.85190 0.73213 1.23812 1.22330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 9.89 71.24 0.70 0.25 16 2 C 0.07 0.69 7.37 25.26 0.19 0.88 16 3 C -0.26 -2.20 6.31 -18.99 -0.12 -2.32 16 4 C 0.59 5.50 7.78 86.65 0.67 6.18 16 5 O -0.57 -8.88 14.51 -4.07 -0.06 -8.94 16 6 N -0.71 -1.84 5.07 -445.83 -2.26 -4.10 16 7 C 0.15 0.31 2.45 44.99 0.11 0.42 16 8 H 0.07 0.48 7.58 -2.38 -0.02 0.46 16 9 C -0.12 0.35 5.39 30.59 0.16 0.51 16 10 C -0.11 0.30 4.85 30.59 0.15 0.45 16 11 C -0.08 0.16 1.78 -10.79 -0.02 0.14 16 12 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 13 C -0.09 0.13 2.51 -10.79 -0.03 0.11 16 14 C -0.15 0.34 8.84 71.98 0.64 0.98 16 15 C -0.15 0.16 8.84 71.98 0.64 0.80 16 16 C -0.11 -0.05 4.85 30.58 0.15 0.09 16 17 C -0.12 -0.27 5.49 30.58 0.17 -0.10 16 18 C -0.14 -0.53 10.48 23.65 0.25 -0.28 16 19 C -0.04 -0.20 6.22 24.76 0.15 -0.05 16 20 C -0.03 0.09 2.97 71.24 0.21 0.30 16 21 O -0.56 1.92 12.86 -148.98 -1.92 0.00 16 22 Si 0.81 -1.60 32.09 68.60 2.20 0.61 16 23 O -0.19 -1.92 8.90 4.53 0.04 -1.88 16 24 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 26 H 0.10 0.80 6.48 -2.39 -0.02 0.78 16 27 H 0.41 -1.17 7.77 -92.71 -0.72 -1.89 16 28 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.08 -0.35 6.43 -2.38 -0.02 -0.37 16 32 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.06 -0.19 6.43 -2.39 -0.02 -0.21 16 36 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.06 -0.04 6.43 -2.39 -0.02 -0.05 16 38 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.05 0.14 8.14 -2.39 -0.02 0.13 16 40 H 0.07 0.02 6.43 -2.39 -0.02 0.00 16 41 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.19 -0.56 7.74 -2.91 -0.02 -0.58 16 44 H 0.13 -1.23 7.96 -2.39 -0.02 -1.25 16 45 H 0.41 -6.21 8.74 -74.06 -0.65 -6.85 16 46 H -0.31 -2.49 7.11 99.48 0.71 -1.78 16 47 H -0.30 -1.47 7.11 99.48 0.71 -0.76 16 Total: 0.00 -20.63 369.64 1.67 -18.96 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: -0.36 Total: -13.02 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.02 Total: 8.37 kcal Atomic # 7 Polarization: -1.84 SS G_CDS: -2.26 Total: -4.10 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.93 Total: -10.82 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 2.20 Total: 0.61 kcal Total: -20.63 1.67 -18.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13308374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.546 kcal (2) G-P(sol) polarization free energy of solvation -20.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds