Wall clock time and date at job start Sun Mar 7 2021 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47473 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99974 * 2 1 3 5 5 H 1.09000 * 109.47140 * 300.00108 * 4 2 1 6 6 C 1.53006 * 109.47164 * 60.00057 * 4 2 1 7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4 9 9 H 1.08996 * 109.46550 * 300.00288 * 8 7 6 10 10 N 1.46500 * 109.47089 * 179.97438 * 8 7 6 11 11 C 1.34782 * 119.99474 * 154.99416 * 10 8 7 12 12 O 1.21590 * 119.99955 * 0.02562 * 11 10 8 13 13 C 1.47559 * 119.99367 * 179.97438 * 11 10 8 14 14 C 1.39825 * 120.00387 * 359.73206 * 13 11 10 15 15 C 1.36569 * 119.99915 * 179.69464 * 14 13 11 16 16 C 1.39825 * 119.99561 * 0.59992 * 15 14 13 17 17 C 1.47559 * 119.99782 * 179.69998 * 16 15 14 18 18 C 1.34989 * 125.27560 * 359.69302 * 17 16 15 19 19 C 1.37796 * 114.69932 * 179.85965 * 18 17 16 20 20 C 1.33736 * 115.08227 * 0.43352 * 19 18 17 21 21 C 1.50704 * 125.11796 * 179.80050 * 20 19 18 22 22 O 1.42897 * 109.47124 * 64.98609 * 21 20 19 23 23 Si 1.86296 * 109.47151 * 184.98349 * 21 20 19 24 24 S 1.75854 * 109.76207 * 359.76982 * 20 19 18 25 25 C 1.39820 * 120.00541 * 359.67354 * 16 15 14 26 26 C 1.36565 * 120.00273 * 0.02707 * 25 16 15 27 27 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 28 28 C 1.52997 * 109.47165 * 300.00293 * 27 8 7 29 29 H 1.09000 * 109.47250 * 299.99985 * 1 2 3 30 30 H 1.09004 * 109.46862 * 59.99962 * 1 2 3 31 31 H 1.09002 * 109.47722 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47250 * 240.00015 * 2 1 3 33 33 H 1.09001 * 109.47372 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47261 * 300.00171 * 3 2 1 35 35 H 1.09004 * 109.47368 * 59.99787 * 3 2 1 36 36 H 1.09001 * 109.46998 * 299.99705 * 6 4 2 37 37 H 1.09000 * 109.47050 * 59.99996 * 6 4 2 38 38 H 1.09000 * 109.47140 * 60.00051 * 7 6 4 39 39 H 1.09001 * 109.47230 * 179.97438 * 7 6 4 40 40 H 0.96992 * 120.00233 * 335.00422 * 10 8 7 41 41 H 1.07997 * 120.00544 * 359.97438 * 14 13 11 42 42 H 1.07996 * 120.00436 * 180.30058 * 15 14 13 43 43 H 1.08005 * 122.64802 * 0.02562 * 18 17 16 44 44 H 1.08010 * 122.45453 * 180.22162 * 19 18 17 45 45 H 1.08998 * 109.47093 * 304.98206 * 21 20 19 46 46 H 0.96702 * 114.00413 * 59.99331 * 22 21 20 47 47 H 1.48505 * 110.00000 * 58.68340 * 23 21 20 48 48 H 1.48495 * 110.00152 * 179.97438 * 23 21 20 49 49 H 1.08003 * 120.00214 * 180.02562 * 25 16 15 50 50 H 1.07992 * 120.00356 * 180.02562 * 26 25 16 51 51 H 1.09000 * 109.47054 * 60.00300 * 27 8 7 52 52 H 1.09001 * 109.46997 * 180.02562 * 27 8 7 53 53 H 1.09000 * 109.47140 * 299.99954 * 28 27 8 54 54 H 1.09002 * 109.47045 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6765 -0.2074 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 2.0404 -2.8852 2.4981 8 6 3.5704 -2.8852 2.4976 9 1 3.9333 -3.3989 1.6074 10 7 4.0591 -3.5755 3.6938 11 6 5.2811 -4.1442 3.6916 12 8 5.9779 -4.0839 2.6970 13 6 5.7736 -4.8389 4.8966 14 6 4.9749 -4.9025 6.0426 15 6 5.4282 -5.5509 7.1557 16 6 6.6962 -6.1404 7.1536 17 6 7.1887 -6.8353 8.3586 18 6 6.5098 -6.9605 9.5186 19 6 7.1762 -7.6565 10.5035 20 6 8.3941 -8.0928 10.1644 21 6 9.3181 -8.8712 11.0652 22 8 8.7350 -10.1415 11.3625 23 14 10.9531 -9.1236 10.2088 24 16 8.7545 -7.6221 8.5088 25 6 7.4972 -6.0719 6.0097 26 6 7.0415 -5.4288 4.8944 27 6 4.0804 -1.4428 2.4976 28 6 3.5699 -0.7214 1.2487 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 0.4399 -2.1638 1.2493 37 1 1.8932 -2.6776 0.3592 38 1 1.6774 -2.3715 3.3883 39 1 1.6767 -3.9128 2.4984 40 1 3.5033 -3.6234 4.4872 41 1 3.9977 -4.4428 6.0460 42 1 4.8095 -5.6042 8.0392 43 1 5.5212 -6.5500 9.6623 44 1 6.7478 -7.8336 11.4791 45 1 9.4745 -8.3175 11.9910 46 1 8.5674 -10.6894 10.5835 47 1 11.5550 -7.8100 9.8657 48 1 11.8736 -9.8895 11.0870 49 1 8.4764 -6.5276 6.0079 50 1 7.6599 -5.3763 4.0107 51 1 3.7174 -0.9291 3.3878 52 1 5.1704 -1.4428 2.4967 53 1 3.9329 -1.2351 0.3585 54 1 3.9336 0.3062 1.2485 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13308390.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:21 Heat of formation + Delta-G solvation = -26.528617 kcal Electronic energy + Delta-G solvation = -31844.058001 eV Core-core repulsion = 27644.812412 eV Total energy + Delta-G solvation = -4199.245589 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.170 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.56336 -40.38477 -39.59145 -38.94701 -37.38094 -36.71655 -34.42213 -33.33557 -32.25529 -31.91231 -30.62648 -29.35774 -28.00531 -27.14597 -24.93246 -24.11456 -23.71909 -23.45874 -23.14229 -21.57309 -21.21843 -20.59878 -20.25528 -19.20483 -18.57859 -17.73667 -17.35009 -16.75772 -16.51377 -16.21994 -16.18303 -16.05601 -15.81637 -15.52602 -15.27464 -15.15316 -14.98706 -14.63945 -14.57572 -14.42128 -14.40758 -14.24154 -14.16739 -13.90975 -13.61319 -13.38561 -13.30193 -13.10245 -13.06457 -12.77685 -12.66125 -12.57631 -12.30897 -12.28561 -12.10675 -12.05671 -12.03268 -11.62315 -11.58686 -11.32310 -11.27931 -10.98504 -10.87306 -10.78109 -10.55738 -10.19408 -10.10347 -9.54525 -9.03745 -5.17656 -0.89278 0.25263 0.33442 0.38591 0.76069 1.21465 1.51775 1.59363 1.84226 1.96309 2.05521 2.82733 3.39163 3.44671 3.61589 3.66588 3.69317 3.72442 3.75244 3.83063 3.84259 4.03127 4.12407 4.19740 4.29747 4.31145 4.33063 4.37486 4.38717 4.45574 4.51498 4.54654 4.55721 4.61733 4.66094 4.68185 4.80741 4.83327 4.91659 5.00015 5.02107 5.02310 5.04187 5.09184 5.10612 5.14575 5.19514 5.20613 5.23185 5.28290 5.29972 5.32159 5.37104 5.37950 5.47887 5.49726 5.55848 5.63788 5.73053 6.46493 6.65770 7.13342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.146 3.854 9 H 0.063 0.937 10 N -0.708 5.708 11 C 0.556 3.444 12 O -0.581 6.581 13 C -0.151 4.151 14 C -0.068 4.068 15 C -0.108 4.108 16 C 0.006 3.994 17 C -0.159 4.159 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.222 4.222 21 C -0.024 4.024 22 O -0.547 6.547 23 Si 0.718 3.282 24 S 0.123 5.877 25 C -0.128 4.128 26 C -0.065 4.065 27 C -0.123 4.123 28 C -0.111 4.111 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.396 0.604 47 H -0.270 1.270 48 H -0.269 1.269 49 H 0.135 0.865 50 H 0.128 0.872 51 H 0.075 0.925 52 H 0.041 0.959 53 H 0.052 0.948 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -0.214 2.318 6.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.042 3.958 9 H 0.081 0.919 10 N -0.360 5.360 11 C 0.345 3.655 12 O -0.463 6.463 13 C -0.154 4.154 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.004 3.996 17 C -0.276 4.276 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.339 4.339 21 C -0.138 4.138 22 O -0.355 6.355 23 Si 0.622 3.378 24 S 0.391 5.609 25 C -0.147 4.147 26 C -0.084 4.084 27 C -0.162 4.162 28 C -0.149 4.149 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.253 0.747 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.171 0.829 45 H 0.141 0.859 46 H 0.247 0.753 47 H -0.196 1.196 48 H -0.194 1.194 49 H 0.152 0.848 50 H 0.146 0.854 51 H 0.094 0.906 52 H 0.060 0.940 53 H 0.071 0.929 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.208 -0.033 1.284 3.456 hybrid contribution -1.136 0.527 1.320 1.820 sum -4.345 0.493 2.604 5.089 Atomic orbital electron populations 1.21893 0.94804 1.02147 1.01758 1.21124 0.96048 0.96011 0.97873 1.21907 1.01078 0.96069 1.01765 1.21191 0.94182 0.95836 0.98302 0.90480 1.21601 1.01423 0.94716 0.97246 1.21769 0.91742 1.01983 1.00091 1.21022 0.95199 0.92134 0.87452 0.91871 1.45909 1.16919 1.55506 1.17627 1.18512 0.81704 0.77995 0.87330 1.90778 1.57597 1.61692 1.36194 1.20044 0.96858 1.03774 0.94748 1.21258 0.99886 0.96577 0.90904 1.21199 0.94621 0.97192 0.99784 1.18463 0.94627 0.95740 0.90771 1.23166 0.98850 1.07596 0.98005 1.20638 1.02313 1.00560 0.91205 1.20194 0.93858 0.98447 1.01570 1.25161 1.01333 1.08965 0.98475 1.24402 1.03088 0.85374 1.00914 1.86494 1.84498 1.26568 1.37930 0.94206 0.75314 0.82252 0.86057 1.84133 1.15776 1.52126 1.08901 1.21032 1.00484 1.00726 0.92442 1.20945 0.94695 0.94334 0.98403 1.21851 0.99659 0.95201 0.99484 1.21581 0.95909 1.00420 0.96994 0.92454 0.93097 0.91903 0.91923 0.92641 0.92961 0.92506 0.89906 0.92454 0.89585 0.90585 0.74724 0.82020 0.82157 0.81600 0.82859 0.85938 0.75347 1.19598 1.19382 0.84768 0.85426 0.90588 0.94013 0.92878 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 8.84 71.98 0.64 1.07 16 2 C -0.09 0.18 2.50 -10.80 -0.03 0.15 16 3 C -0.15 0.21 8.84 71.98 0.64 0.85 16 4 C -0.08 0.22 1.78 -10.79 -0.02 0.20 16 5 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 6 C -0.11 0.44 4.85 30.60 0.15 0.59 16 7 C -0.12 0.58 5.39 30.59 0.16 0.75 16 8 C 0.15 0.06 2.45 44.99 0.11 0.17 16 9 H 0.06 0.39 7.58 -2.39 -0.02 0.37 16 10 N -0.71 0.44 5.03 -445.67 -2.24 -1.80 16 11 C 0.56 3.53 7.73 86.70 0.67 4.20 16 12 O -0.58 -8.95 15.99 -4.00 -0.06 -9.01 16 13 C -0.15 -0.43 5.88 -20.05 -0.12 -0.55 16 14 C -0.07 0.25 9.48 22.26 0.21 0.46 16 15 C -0.11 0.39 9.48 22.26 0.21 0.60 16 16 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 17 C -0.16 0.00 6.37 23.98 0.15 0.15 16 18 C -0.12 0.26 9.64 21.42 0.21 0.47 16 19 C -0.11 0.14 10.03 21.14 0.21 0.35 16 20 C -0.22 0.15 5.71 24.66 0.14 0.29 16 21 C -0.02 0.03 2.96 71.24 0.21 0.24 16 22 O -0.55 0.57 12.88 -148.98 -1.92 -1.35 16 23 Si 0.72 -0.92 30.97 68.60 2.12 1.20 16 24 S 0.12 -0.03 19.48 -56.49 -1.10 -1.13 16 25 C -0.13 -0.28 9.54 22.26 0.21 -0.07 16 26 C -0.06 -0.30 9.53 22.27 0.21 -0.09 16 27 C -0.12 -0.13 5.49 30.59 0.17 0.03 16 28 C -0.11 0.01 4.85 30.59 0.15 0.16 16 29 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.06 -0.24 6.43 -2.39 -0.02 -0.25 16 32 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.05 -0.05 6.43 -2.39 -0.02 -0.06 16 34 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.08 -0.45 6.43 -2.39 -0.02 -0.47 16 37 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.41 -3.12 6.61 -92.71 -0.61 -3.74 16 41 H 0.16 -1.77 6.38 -2.91 -0.02 -1.79 16 42 H 0.16 -1.49 6.74 -2.91 -0.02 -1.51 16 43 H 0.17 -1.21 6.88 -2.91 -0.02 -1.23 16 44 H 0.15 -0.49 8.06 -2.91 -0.02 -0.52 16 45 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 46 H 0.40 -3.38 8.70 -74.06 -0.64 -4.03 16 47 H -0.27 -1.03 7.11 99.48 0.71 -0.33 16 48 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 49 H 0.13 0.04 7.26 -2.91 -0.02 0.02 16 50 H 0.13 0.82 7.64 -2.91 -0.02 0.80 16 51 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 52 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 53 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 54 H 0.07 -0.01 6.43 -2.39 -0.02 -0.02 16 Total: 0.00 -18.13 433.01 0.67 -17.46 By element: Atomic # 1 Polarization: -15.00 SS G_CDS: -0.30 Total: -15.30 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.17 Total: 9.92 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.24 Total: -1.80 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.98 Total: -10.36 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.12 Total: 1.20 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.10 Total: -1.13 kcal Total: -18.13 0.67 -17.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13308390.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.071 kcal (2) G-P(sol) polarization free energy of solvation -18.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds