Wall clock time and date at job start Sun Mar 7 2021 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37783 * 119.85238 * 2 1 4 4 C 1.39704 * 119.91068 * 180.02562 * 3 2 1 5 5 C 1.47534 * 120.19563 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00269 * 179.97438 * 5 4 3 7 7 N 1.34773 * 119.99676 * 359.97438 * 5 4 3 8 8 C 1.46504 * 120.00111 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46891 * 325.00262 * 8 7 5 10 10 C 1.53006 * 109.46883 * 84.99828 * 8 7 5 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 8 13 13 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47486 * 59.99437 * 14 12 11 16 16 C 1.53000 * 109.46886 * 180.02562 * 14 12 11 17 17 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 18 18 C 1.52997 * 109.47417 * 204.99914 * 8 7 5 19 19 C 1.40137 * 119.61601 * 0.25052 * 4 3 2 20 20 O 1.35651 * 120.15257 * 179.72701 * 19 4 3 21 21 C 1.38712 * 119.69702 * 359.51820 * 19 4 3 22 22 C 1.50703 * 119.95556 * 180.25159 * 21 19 4 23 23 O 1.42901 * 109.47144 * 75.23945 * 22 21 19 24 24 Si 1.86305 * 109.47075 * 195.23572 * 22 21 19 25 25 C 1.38051 * 120.08484 * 0.48717 * 21 19 4 26 26 H 1.09007 * 109.46976 * 89.99811 * 1 2 3 27 27 H 1.09000 * 109.47462 * 209.99652 * 1 2 3 28 28 H 1.08999 * 109.47276 * 330.00450 * 1 2 3 29 29 H 1.08002 * 120.04679 * 359.97438 * 3 2 1 30 30 H 0.97003 * 120.00265 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.46505 * 59.99948 * 10 8 7 32 32 H 1.08996 * 109.46884 * 300.00829 * 10 8 7 33 33 H 1.09002 * 109.47153 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46832 * 60.00321 * 11 10 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 14 12 11 36 36 H 1.09001 * 109.46997 * 60.00430 * 15 14 12 37 37 H 1.09000 * 109.47054 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47452 * 300.00003 * 15 14 12 39 39 H 1.09001 * 109.47583 * 60.00267 * 16 14 12 40 40 H 1.09004 * 109.46724 * 179.97438 * 16 14 12 41 41 H 1.08992 * 109.47098 * 299.99158 * 16 14 12 42 42 H 1.08992 * 109.47554 * 59.99639 * 17 12 11 43 43 H 1.09004 * 109.47108 * 179.97438 * 17 12 11 44 44 H 1.09002 * 109.47045 * 60.00127 * 18 8 7 45 45 H 1.09001 * 109.47375 * 300.00052 * 18 8 7 46 46 H 0.96702 * 114.00437 * 89.99866 * 20 19 4 47 47 H 1.08998 * 109.47257 * 315.23360 * 22 21 19 48 48 H 0.96694 * 114.00320 * 59.99292 * 23 22 21 49 49 H 1.48499 * 110.00348 * 180.02562 * 24 22 21 50 50 H 1.48504 * 109.99931 * 301.32117 * 24 22 21 51 51 H 1.08003 * 119.80500 * 179.76834 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5899 1.1964 -0.0005 5 6 4.3306 2.4723 -0.0011 6 8 5.5464 2.4695 -0.0011 7 7 3.6595 3.6411 -0.0016 8 6 4.3949 4.9081 -0.0016 9 1 5.3052 4.7998 0.5882 10 6 4.7603 5.2857 -1.4387 11 6 5.5289 6.6086 -1.4387 12 6 4.6545 7.7064 -0.8294 13 1 3.7443 7.8151 -1.4191 14 6 5.4230 9.0295 -0.8300 15 6 5.7878 9.4068 -2.2671 16 6 4.5489 10.1272 -0.2201 17 6 4.2893 7.3289 0.6076 18 6 3.5201 6.0057 0.6074 19 6 4.2836 -0.0212 -0.0064 20 8 5.6401 -0.0325 -0.0126 21 6 3.5770 -1.2148 -0.0015 22 6 4.3172 -2.5275 -0.0020 23 8 4.8552 -2.7715 1.2992 24 14 3.1441 -3.9017 -0.4565 25 6 2.1965 -1.2017 -0.0010 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6512 2.1294 -0.0004 30 1 2.6894 3.6434 -0.0020 31 1 3.8500 5.3939 -2.0284 32 1 5.3834 4.5037 -1.8725 33 1 5.7887 6.8778 -2.4625 34 1 6.4391 6.4999 -0.8490 35 1 6.3334 8.9211 -0.2405 36 1 4.8774 9.5152 -2.8566 37 1 6.3357 10.3491 -2.2674 38 1 6.4107 8.6247 -2.7012 39 1 4.2895 9.8582 0.8038 40 1 5.0965 11.0696 -0.2202 41 1 3.6383 10.2357 -0.8092 42 1 5.1995 7.2202 1.1972 43 1 3.6668 8.1112 1.0418 44 1 3.2599 5.7367 1.6311 45 1 2.6099 6.1140 0.0176 46 1 6.0375 -0.0377 0.8690 47 1 5.1283 -2.4870 -0.7290 48 1 4.1885 -2.8201 1.9977 49 1 3.8617 -5.2018 -0.4600 50 1 2.0166 -3.9470 0.5088 51 1 1.6509 -2.1337 -0.0010 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13422088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:30 Heat of formation + Delta-G solvation = -106.851357 kcal Electronic energy + Delta-G solvation = -29601.214819 eV Core-core repulsion = 25659.093917 eV Total energy + Delta-G solvation = -3942.120902 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83830 -40.68924 -39.52185 -38.06880 -37.80080 -36.63382 -34.35528 -33.07778 -32.66464 -31.92648 -29.43430 -28.01430 -27.53763 -26.78448 -25.38254 -23.51845 -23.48850 -22.05160 -21.47450 -21.10422 -20.58532 -19.66101 -18.40260 -18.15992 -17.49675 -16.98340 -16.84413 -16.34273 -16.06092 -15.88082 -15.69059 -15.37125 -15.16819 -14.99551 -14.95562 -14.56084 -14.41833 -14.40159 -14.24275 -14.13985 -13.60315 -13.39488 -13.32189 -13.07917 -12.95783 -12.77080 -12.69007 -12.54252 -12.30581 -12.23654 -12.11061 -12.05162 -11.84609 -11.71937 -11.62489 -11.33068 -11.20706 -10.98508 -10.89012 -10.54156 -10.25482 -10.00144 -9.51234 -4.94945 -0.35632 0.05619 1.24221 1.52424 1.70692 1.90980 2.05325 2.53905 3.17735 3.35589 3.49476 3.52866 3.64647 3.69483 3.76155 3.79285 4.01499 4.10059 4.12722 4.17396 4.27962 4.31806 4.37147 4.38644 4.50265 4.52899 4.54871 4.60806 4.64859 4.66922 4.78454 4.82073 4.82907 4.90632 4.96499 5.00254 5.01150 5.03315 5.07986 5.12794 5.17676 5.18636 5.19900 5.24154 5.28702 5.36289 5.36926 5.41508 5.49454 5.54756 5.62493 5.67095 6.45389 6.46749 6.67317 7.16178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.061 4.061 4 C -0.180 4.180 5 C 0.554 3.446 6 O -0.565 6.565 7 N -0.710 5.710 8 C 0.148 3.852 9 H 0.061 0.939 10 C -0.123 4.123 11 C -0.111 4.111 12 C -0.076 4.076 13 H 0.078 0.922 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.161 3.839 20 O -0.493 6.493 21 C -0.152 4.152 22 C -0.085 4.085 23 O -0.547 6.547 24 Si 0.779 3.221 25 C -0.080 4.080 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.413 0.587 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.400 0.600 47 H 0.107 0.893 48 H 0.386 0.614 49 H -0.304 1.304 50 H -0.259 1.259 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 2.272 0.055 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.079 4.079 4 C -0.183 4.183 5 C 0.342 3.658 6 O -0.445 6.445 7 N -0.363 5.363 8 C 0.044 3.956 9 H 0.079 0.921 10 C -0.161 4.161 11 C -0.149 4.149 12 C -0.095 4.095 13 H 0.096 0.904 14 C -0.111 4.111 15 C -0.208 4.208 16 C -0.206 4.206 17 C -0.150 4.150 18 C -0.155 4.155 19 C 0.115 3.885 20 O -0.305 6.305 21 C -0.153 4.153 22 C -0.193 4.193 23 O -0.355 6.355 24 Si 0.682 3.318 25 C -0.098 4.098 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.177 0.823 30 H 0.251 0.749 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.259 0.741 47 H 0.125 0.875 48 H 0.235 0.765 49 H -0.232 1.232 50 H -0.185 1.185 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.000 1.580 -0.612 9.158 hybrid contribution 0.711 0.129 1.581 1.738 sum -8.289 1.709 0.969 8.518 Atomic orbital electron populations 1.20921 0.87939 1.04413 1.04056 1.20120 0.98132 0.91697 0.99337 1.21425 0.90895 0.99922 0.95692 1.20437 0.95131 0.92511 1.10244 1.18367 0.86952 0.84486 0.75982 1.90805 1.15061 1.87942 1.50656 1.45902 1.10893 1.04766 1.74701 1.20990 0.95519 0.82493 0.96584 0.92080 1.21842 1.00701 0.97154 0.96430 1.21579 0.98203 0.93680 1.01410 1.21187 0.98476 0.93362 0.96439 0.90402 1.21127 0.98554 0.94710 0.96690 1.21906 1.01507 1.01137 0.96269 1.21891 0.99721 0.97866 1.01095 1.21608 1.00369 0.96484 0.96505 1.21775 0.98698 0.93397 1.01636 1.18578 0.83520 0.90913 0.95534 1.84658 1.15495 1.96080 1.34232 1.20633 0.94629 0.94949 1.05108 1.25270 1.05993 1.00162 0.87876 1.86602 1.38099 1.93632 1.17151 0.93831 0.76055 0.73062 0.88844 1.21414 0.92153 0.99789 0.96428 0.89345 0.90390 0.89856 0.82298 0.74944 0.90583 0.94338 0.91244 0.93001 0.91993 0.92430 0.92923 0.92712 0.91912 0.93065 0.92388 0.92534 0.89821 0.90628 0.89531 0.74066 0.87481 0.76472 1.23223 1.18487 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.17 10.00 71.24 0.71 1.88 16 2 C -0.09 0.43 5.87 -19.90 -0.12 0.31 16 3 C -0.06 0.19 9.18 22.52 0.21 0.40 16 4 C -0.18 -0.79 5.89 -20.01 -0.12 -0.91 16 5 C 0.55 4.42 7.73 86.70 0.67 5.09 16 6 O -0.57 -9.58 14.82 16.93 0.25 -9.32 16 7 N -0.71 -0.38 5.03 -445.70 -2.24 -2.63 16 8 C 0.15 0.20 2.45 44.99 0.11 0.31 16 9 H 0.06 0.45 7.58 -2.39 -0.02 0.43 16 10 C -0.12 -0.28 5.49 30.60 0.17 -0.11 16 11 C -0.11 -0.10 4.85 30.59 0.15 0.05 16 12 C -0.08 0.18 1.77 -10.79 -0.02 0.16 16 13 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 14 C -0.09 0.14 2.51 -10.79 -0.03 0.11 16 15 C -0.15 0.15 8.84 71.98 0.64 0.78 16 16 C -0.15 0.39 8.84 71.98 0.64 1.03 16 17 C -0.11 0.38 4.85 30.61 0.15 0.53 16 18 C -0.12 0.51 5.39 30.61 0.17 0.67 16 19 C 0.16 1.11 6.69 22.84 0.15 1.27 16 20 O -0.49 -5.50 10.90 -68.74 -0.75 -6.25 16 21 C -0.15 -0.30 5.27 -19.79 -0.10 -0.40 16 22 C -0.09 -0.17 2.38 71.24 0.17 0.00 16 23 O -0.55 -2.10 12.88 -148.98 -1.92 -4.02 16 24 Si 0.78 -1.84 30.24 68.60 2.07 0.23 16 25 C -0.08 0.23 8.30 22.30 0.19 0.42 16 26 H 0.09 -1.00 8.14 -2.38 -0.02 -1.02 16 27 H 0.08 -0.83 8.08 -2.39 -0.02 -0.85 16 28 H 0.08 -0.99 8.08 -2.39 -0.02 -1.01 16 29 H 0.16 -1.56 6.40 -2.91 -0.02 -1.57 16 30 H 0.41 -2.63 6.63 -92.71 -0.61 -3.24 16 31 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.06 6.43 -2.39 -0.02 0.04 16 34 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.05 -0.01 6.43 -2.39 -0.02 -0.03 16 39 H 0.06 -0.22 6.43 -2.39 -0.02 -0.24 16 40 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.08 -0.43 6.43 -2.38 -0.02 -0.45 16 44 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.40 2.79 9.06 -74.06 -0.67 2.12 16 47 H 0.11 0.49 7.82 -2.39 -0.02 0.47 16 48 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 49 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 50 H -0.26 0.56 6.68 99.48 0.66 1.23 16 51 H 0.16 -1.07 4.83 -2.91 -0.01 -1.09 16 Total: 0.00 -20.18 392.73 0.16 -20.02 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: -0.98 Total: -9.62 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 3.73 Total: 11.59 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.24 Total: -2.63 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -2.42 Total: -19.59 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.07 Total: 0.23 kcal Total: -20.18 0.16 -20.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13422088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.833 kcal (2) G-P(sol) polarization free energy of solvation -20.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds