Wall clock time and date at job start Sun Mar 7 2021 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 C 1.53000 * 109.46912 * 119.99837 * 2 1 3 5 5 H 1.08989 * 109.47439 * 300.00102 * 4 2 1 6 6 C 1.53004 * 109.46880 * 60.00524 * 4 2 1 7 7 C 1.53003 * 109.46588 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47232 * 299.99493 * 7 6 4 9 9 H 1.09003 * 109.47188 * 300.00386 * 8 7 6 10 10 N 1.46501 * 109.47222 * 180.02562 * 8 7 6 11 11 C 1.34777 * 120.00083 * 85.00019 * 10 8 7 12 12 O 1.21593 * 120.00016 * 359.97438 * 11 10 8 13 13 C 1.47523 * 119.99932 * 180.02562 * 11 10 8 14 14 C 1.39773 * 120.06701 * 179.97438 * 13 11 10 15 15 C 1.37634 * 119.92800 * 179.74343 * 14 13 11 16 16 C 1.50699 * 119.96590 * 180.27447 * 15 14 13 17 17 O 1.42904 * 109.47329 * 105.27691 * 16 15 14 18 18 Si 1.86299 * 109.47164 * 345.27564 * 16 15 14 19 19 C 1.39189 * 120.06841 * 0.54663 * 15 14 13 20 20 N 1.39055 * 119.93336 * 179.72480 * 19 15 14 21 21 C 1.46901 * 110.99854 * 239.73141 * 20 19 15 22 22 C 1.46898 * 110.99970 * 115.77306 * 20 19 15 23 23 C 1.39243 * 120.14102 * 359.45216 * 19 15 14 24 24 C 1.37595 * 120.06584 * 0.27144 * 23 19 15 25 25 C 1.52998 * 109.47201 * 60.00280 * 8 7 6 26 26 C 1.52996 * 109.47344 * 300.00244 * 25 8 7 27 27 H 1.09005 * 109.47214 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47756 * 300.00193 * 1 2 3 29 29 H 1.08999 * 109.47168 * 60.00001 * 1 2 3 30 30 H 1.09003 * 109.47188 * 240.00061 * 2 1 3 31 31 H 1.08997 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47183 * 299.99991 * 3 2 1 33 33 H 1.08996 * 109.46830 * 60.00308 * 3 2 1 34 34 H 1.08997 * 109.46995 * 299.99469 * 6 4 2 35 35 H 1.09002 * 109.47110 * 60.00052 * 6 4 2 36 36 H 1.09005 * 109.46495 * 179.97438 * 7 6 4 37 37 H 1.08996 * 109.47558 * 60.00433 * 7 6 4 38 38 H 0.97002 * 120.00202 * 265.00444 * 10 8 7 39 39 H 1.07994 * 120.03644 * 0.02562 * 14 13 11 40 40 H 1.08996 * 109.47131 * 225.27626 * 16 15 14 41 41 H 0.96702 * 113.99585 * 299.99492 * 17 16 15 42 42 H 1.48503 * 110.00385 * 180.02562 * 18 16 15 43 43 H 1.48508 * 109.99774 * 301.32116 * 18 16 15 44 44 H 1.09002 * 109.47401 * 59.99571 * 21 20 19 45 45 H 1.09001 * 109.46874 * 299.99584 * 21 20 19 46 46 H 1.09004 * 109.46970 * 179.97438 * 21 20 19 47 47 H 1.09006 * 109.46770 * 179.97438 * 22 20 19 48 48 H 1.09001 * 109.47456 * 300.00115 * 22 20 19 49 49 H 1.09000 * 109.46814 * 60.00421 * 22 20 19 50 50 H 1.07994 * 119.96987 * 180.29314 * 23 19 15 51 51 H 1.07994 * 120.03448 * 179.97438 * 24 23 19 52 52 H 1.09003 * 109.46963 * 59.99968 * 25 8 7 53 53 H 1.08995 * 109.47179 * 179.97438 * 25 8 7 54 54 H 1.09001 * 109.47752 * 179.97438 * 26 25 8 55 55 H 1.09003 * 109.46865 * 299.99784 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4982 8 6 3.5704 -2.8851 2.4976 9 1 3.9335 -3.3988 1.6074 10 7 4.0593 -3.5764 3.6932 11 6 4.1880 -4.9180 3.6907 12 8 3.8980 -5.5547 2.6962 13 6 4.6797 -5.6141 4.8948 14 6 4.8133 -7.0054 4.8939 15 6 5.2773 -7.6514 6.0172 16 6 5.4275 -9.1509 6.0151 17 8 6.8119 -9.4909 5.9160 18 14 4.5071 -9.8651 4.5613 19 6 5.6026 -6.9217 7.1570 20 7 6.0657 -7.5778 8.2922 21 6 5.1819 -7.3322 9.4395 22 6 7.4480 -7.1868 8.5991 23 6 5.4707 -5.5356 7.1611 24 6 5.0127 -4.8834 6.0394 25 6 4.0805 -1.4427 2.4976 26 6 3.5700 -0.7212 1.2487 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.4400 -2.1638 1.2492 35 1 1.8934 -2.6776 0.3592 36 1 1.6768 -3.9127 2.4983 37 1 1.6774 -2.3715 3.3884 38 1 4.2902 -3.0685 4.4867 39 1 4.5569 -7.5725 4.0113 40 1 5.0186 -9.5583 6.9397 41 1 7.2418 -9.1599 5.1155 42 1 4.6468 -11.3435 4.5482 43 1 3.0716 -9.4918 4.6358 44 1 4.1798 -7.6949 9.2105 45 1 5.1429 -6.2626 9.6456 46 1 5.5670 -7.8572 10.3138 47 1 7.7852 -7.7141 9.4915 48 1 8.0934 -7.4438 7.7591 49 1 7.4910 -6.1119 8.7747 50 1 5.7284 -4.9717 8.0453 51 1 4.9102 -3.8083 6.0432 52 1 3.7174 -0.9289 3.3878 53 1 5.1704 -1.4427 2.4976 54 1 3.9329 0.3066 1.2489 55 1 3.9330 -1.2349 0.3585 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13422196.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:34 Heat of formation + Delta-G solvation = -44.276244 kcal Electronic energy + Delta-G solvation = -31395.205035 eV Core-core repulsion = 27397.978637 eV Total energy + Delta-G solvation = -3997.226399 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.225 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.76839 -40.82920 -39.68728 -37.83021 -37.23663 -36.68249 -34.27650 -32.73252 -31.89777 -31.39357 -29.38073 -28.54836 -28.00224 -26.90634 -26.16059 -24.04902 -23.46197 -23.03928 -22.69494 -21.32752 -21.05210 -20.55981 -19.09957 -17.89406 -17.64052 -17.53739 -16.67362 -16.43485 -16.24936 -16.13118 -15.84416 -15.55409 -15.42466 -15.16180 -15.13558 -14.91871 -14.74130 -14.53423 -14.40353 -14.23330 -14.16418 -13.98181 -13.53354 -13.36363 -13.11861 -13.06186 -13.00530 -12.76259 -12.66810 -12.63999 -12.55001 -12.28053 -12.25331 -12.09368 -12.04199 -12.01982 -11.60821 -11.31231 -11.25321 -10.96741 -10.85094 -10.40605 -10.15831 -10.10645 -9.76620 -9.51183 -5.04211 -0.38110 0.15066 1.26243 1.55073 1.68293 1.88130 2.05444 2.64186 2.79070 3.49014 3.57250 3.67397 3.67777 3.72356 3.79768 3.84058 4.01206 4.06239 4.12758 4.15756 4.24046 4.31521 4.34242 4.35651 4.39966 4.44311 4.49583 4.52459 4.56165 4.58736 4.65327 4.66695 4.68820 4.78163 4.82073 4.83594 4.92271 4.99321 5.01430 5.02869 5.04129 5.05665 5.10565 5.12307 5.16696 5.21139 5.22092 5.25641 5.30851 5.38058 5.38748 5.49713 5.56406 5.56710 5.64760 5.84754 6.28346 6.47369 6.80884 7.14470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.067 0.933 10 N -0.709 5.709 11 C 0.557 3.443 12 O -0.574 6.574 13 C -0.148 4.148 14 C -0.058 4.058 15 C -0.117 4.117 16 C -0.036 4.036 17 O -0.541 6.541 18 Si 0.735 3.265 19 C 0.137 3.863 20 N -0.524 5.524 21 C 0.024 3.976 22 C 0.034 3.966 23 C -0.157 4.157 24 C -0.057 4.057 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.389 0.611 42 H -0.288 1.288 43 H -0.296 1.296 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.041 0.959 50 H 0.148 0.852 51 H 0.160 0.840 52 H 0.083 0.917 53 H 0.076 0.924 54 H 0.081 0.919 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 7.451 2.758 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.086 0.914 10 N -0.360 5.360 11 C 0.346 3.654 12 O -0.455 6.455 13 C -0.151 4.151 14 C -0.077 4.077 15 C -0.118 4.118 16 C -0.148 4.148 17 O -0.348 6.348 18 Si 0.642 3.358 19 C 0.042 3.958 20 N -0.245 5.245 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.177 4.177 24 C -0.076 4.076 25 C -0.156 4.156 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.238 0.762 42 H -0.216 1.216 43 H -0.224 1.224 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.166 0.834 51 H 0.177 0.823 52 H 0.102 0.898 53 H 0.095 0.905 54 H 0.100 0.900 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.317 5.695 2.286 6.277 hybrid contribution -0.261 0.768 0.931 1.235 sum 1.056 6.464 3.216 7.296 Atomic orbital electron populations 1.21909 0.95475 1.01737 1.01718 1.21129 0.95599 0.96389 0.97939 1.21895 1.01463 0.95547 1.01712 1.21191 0.95349 0.94799 0.98206 0.90653 1.21580 1.00754 0.95466 0.97096 1.21855 0.95081 0.99953 0.99366 1.21021 0.93729 0.93411 0.87558 0.91441 1.45908 1.66445 1.06029 1.17653 1.18394 0.77057 0.82757 0.87217 1.90788 1.51864 1.66940 1.35872 1.19875 1.06296 0.94056 0.94853 1.21070 0.95646 0.93737 0.97248 1.20243 1.01544 0.96883 0.93147 1.24677 0.89147 0.92358 1.08635 1.86517 1.21229 1.78773 1.48266 0.94234 0.78593 0.78125 0.84849 1.18977 0.94663 0.90737 0.91427 1.59366 1.03968 1.57997 1.03203 1.22533 0.96709 1.00645 0.92322 1.22428 0.86913 0.99243 1.02586 1.21843 1.01590 0.94368 0.99882 1.21434 0.94408 1.00995 0.90730 1.21765 1.01334 0.92530 0.99969 1.21598 0.94890 1.01145 0.97336 0.92613 0.92587 0.92981 0.91810 0.91869 0.93108 0.92540 0.91358 0.92684 0.93879 0.90819 0.74868 0.84344 0.87529 0.76224 1.21565 1.22350 0.91860 0.93722 0.89828 0.90219 0.91384 0.94045 0.83401 0.82303 0.89823 0.90502 0.90029 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 8.84 71.98 0.64 0.88 16 2 C -0.09 0.21 2.51 -10.79 -0.03 0.19 16 3 C -0.15 0.47 8.84 71.98 0.64 1.11 16 4 C -0.08 0.26 1.78 -10.79 -0.02 0.24 16 5 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.11 0.08 4.85 30.60 0.15 0.23 16 7 C -0.12 -0.04 5.49 30.59 0.17 0.13 16 8 C 0.15 -0.11 2.45 44.99 0.11 0.00 16 9 H 0.07 0.30 7.58 -2.39 -0.02 0.29 16 10 N -0.71 1.28 5.03 -445.71 -2.24 -0.97 16 11 C 0.56 2.60 7.73 86.69 0.67 3.27 16 12 O -0.57 -7.39 16.00 -4.01 -0.06 -7.45 16 13 C -0.15 -0.25 5.88 -20.08 -0.12 -0.37 16 14 C -0.06 -0.19 8.19 22.50 0.18 -0.01 16 15 C -0.12 -0.31 5.27 -19.78 -0.10 -0.41 16 16 C -0.04 -0.12 2.33 71.24 0.17 0.05 16 17 O -0.54 -1.50 12.88 -148.98 -1.92 -3.42 16 18 Si 0.73 2.78 29.91 68.60 2.05 4.83 16 19 C 0.14 0.14 4.70 38.47 0.18 0.33 16 20 N -0.52 -0.43 4.20 -745.08 -3.13 -3.56 16 21 C 0.02 -0.05 9.34 127.69 1.19 1.14 16 22 C 0.03 -0.06 9.38 127.69 1.20 1.14 16 23 C -0.16 0.46 8.53 22.36 0.19 0.65 16 24 C -0.06 0.22 9.53 22.50 0.21 0.44 16 25 C -0.12 0.67 5.39 30.59 0.16 0.84 16 26 C -0.11 0.51 4.85 30.60 0.15 0.66 16 27 H 0.05 -0.06 6.43 -2.38 -0.02 -0.08 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 -0.26 6.43 -2.39 -0.02 -0.27 16 32 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.07 -0.03 6.43 -2.39 -0.02 -0.05 16 35 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.04 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.41 -3.42 6.62 -92.71 -0.61 -4.04 16 39 H 0.14 0.51 4.69 -2.91 -0.01 0.50 16 40 H 0.11 0.61 7.77 -2.39 -0.02 0.59 16 41 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 42 H -0.29 -2.83 7.11 99.48 0.71 -2.12 16 43 H -0.30 -3.03 7.11 99.48 0.71 -2.32 16 44 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.04 -0.20 7.10 -2.39 -0.02 -0.22 16 46 H 0.08 -0.28 8.12 -2.38 -0.02 -0.30 16 47 H 0.08 -0.22 8.12 -2.38 -0.02 -0.24 16 48 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.04 -0.18 7.32 -2.39 -0.02 -0.19 16 50 H 0.15 -1.00 6.99 -2.91 -0.02 -1.02 16 51 H 0.16 -1.73 6.39 -2.91 -0.02 -1.74 16 52 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 53 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 54 H 0.08 -0.48 6.43 -2.39 -0.02 -0.50 16 55 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -16.69 417.20 0.10 -16.59 By element: Atomic # 1 Polarization: -16.16 SS G_CDS: -0.34 Total: -16.50 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.74 Total: 10.48 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -5.37 Total: -4.53 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.98 Total: -10.87 kcal Atomic # 14 Polarization: 2.78 SS G_CDS: 2.05 Total: 4.83 kcal Total: -16.69 0.10 -16.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13422196.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -16.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds