Wall clock time and date at job start Sun Mar 7 2021 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 C 1.53000 * 109.46883 * 119.99706 * 2 1 3 5 5 H 1.08995 * 109.47304 * 299.99918 * 4 2 1 6 6 C 1.53005 * 109.46804 * 60.00242 * 4 2 1 7 7 C 1.52998 * 109.46829 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47369 * 300.00174 * 7 6 4 9 9 H 1.09004 * 109.47026 * 299.99874 * 8 7 6 10 10 N 1.46500 * 109.47041 * 180.02562 * 8 7 6 11 11 C 1.34775 * 120.00054 * 84.99873 * 10 8 7 12 12 O 1.21655 * 120.00350 * 359.97438 * 11 10 8 13 13 C 1.47048 * 119.99679 * 179.97438 * 11 10 8 14 14 C 1.36226 * 123.48866 * 180.02562 * 13 11 10 15 15 Cl 1.73603 * 124.60719 * 0.02562 * 14 13 11 16 16 S 1.70452 * 110.78819 * 179.74391 * 14 13 11 17 17 C 1.75493 * 92.46367 * 0.30922 * 16 14 13 18 18 C 1.50700 * 124.68559 * 179.97438 * 17 16 14 19 19 O 1.42896 * 109.47341 * 119.69324 * 18 17 16 20 20 Si 1.86300 * 109.46849 * 359.69210 * 18 17 16 21 21 C 1.32691 * 110.63008 * 359.68770 * 17 16 14 22 22 C 1.52997 * 109.47383 * 59.99636 * 8 7 6 23 23 C 1.52998 * 109.47165 * 300.00489 * 22 8 7 24 24 H 1.08995 * 109.47084 * 300.00242 * 1 2 3 25 25 H 1.09002 * 109.46902 * 59.99721 * 1 2 3 26 26 H 1.08995 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46937 * 240.00293 * 2 1 3 28 28 H 1.09003 * 109.47344 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47505 * 299.99909 * 3 2 1 30 30 H 1.09004 * 109.47206 * 59.99792 * 3 2 1 31 31 H 1.08992 * 109.46920 * 299.99713 * 6 4 2 32 32 H 1.09004 * 109.47277 * 59.99919 * 6 4 2 33 33 H 1.09001 * 109.47253 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46943 * 60.00099 * 7 6 4 35 35 H 0.96998 * 119.99956 * 264.99443 * 10 8 7 36 36 H 1.09000 * 109.46989 * 239.69654 * 18 17 16 37 37 H 0.96693 * 114.00306 * 299.99773 * 19 18 17 38 38 H 1.48506 * 110.00048 * 58.68772 * 20 18 17 39 39 H 1.48502 * 109.99996 * 180.02562 * 20 18 17 40 40 H 1.08002 * 123.44779 * 180.26445 * 21 17 16 41 41 H 1.09004 * 109.46845 * 60.00127 * 22 8 7 42 42 H 1.08999 * 109.47306 * 179.97438 * 22 8 7 43 43 H 1.09009 * 109.46912 * 179.97438 * 23 22 8 44 44 H 1.08995 * 109.46977 * 299.99815 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 2.0404 -2.8851 2.4982 8 6 3.5704 -2.8851 2.4977 9 1 3.9335 -3.3988 1.6075 10 7 4.0591 -3.5764 3.6933 11 6 4.1878 -4.9180 3.6908 12 8 3.8978 -5.5550 2.6958 13 6 4.6789 -5.6117 4.8907 14 6 4.8366 -6.9627 4.9662 15 17 4.4887 -8.0697 3.6750 16 16 5.4294 -7.4179 6.4982 17 6 5.4610 -5.7568 7.0634 18 6 5.9064 -5.3268 8.4374 19 8 7.0227 -4.4424 8.3213 20 14 6.4017 -6.8255 9.4270 21 6 5.0446 -4.9311 6.1118 22 6 4.0805 -1.4426 2.4977 23 6 3.5700 -0.7213 1.2487 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.4400 -2.1637 1.2492 32 1 1.8933 -2.6776 0.3593 33 1 1.6775 -3.9129 2.4980 34 1 1.6774 -2.3714 3.3884 35 1 4.2901 -3.0685 4.4868 36 1 5.0870 -4.8135 8.9408 37 1 7.7903 -4.8334 7.8821 38 1 7.4967 -7.5518 8.7351 39 1 6.8423 -6.4150 10.7844 40 1 4.9855 -3.8600 6.2370 41 1 3.7174 -0.9289 3.3878 42 1 5.1704 -1.4426 2.4978 43 1 3.9330 0.3066 1.2489 44 1 3.9330 -1.2350 0.3586 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_13431040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:43 Heat of formation + Delta-G solvation = -58.106398 kcal Electronic energy + Delta-G solvation = -25727.182826 eV Core-core repulsion = 21990.747929 eV Total energy + Delta-G solvation = -3736.434897 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35824 -39.98398 -38.91225 -38.01685 -37.04906 -36.65259 -34.07542 -31.91193 -31.69560 -29.65663 -28.00771 -26.91169 -25.89191 -23.54056 -23.45139 -22.13971 -21.25133 -20.78039 -20.44682 -19.40030 -18.13886 -17.90798 -17.04876 -16.61697 -16.40244 -16.08436 -15.79384 -15.63646 -15.23589 -15.16678 -14.78860 -14.69244 -14.48996 -14.38102 -14.25455 -14.10574 -13.92359 -13.37347 -13.07147 -12.98434 -12.75317 -12.66261 -12.59802 -12.49116 -12.29280 -12.12450 -12.09166 -12.03165 -11.81677 -11.61915 -11.32071 -11.18652 -10.96743 -10.87851 -10.70938 -10.14241 -9.87918 -9.65286 -5.05266 -0.63566 -0.19375 0.47709 0.71744 1.04224 1.18865 1.53394 1.89551 2.14991 2.18053 3.23822 3.47546 3.64170 3.69695 3.75960 3.85791 3.90693 4.03195 4.12703 4.30184 4.33184 4.38336 4.38984 4.51714 4.54618 4.55647 4.66122 4.68155 4.77159 4.81335 4.83055 4.96443 5.01833 5.02550 5.04682 5.09621 5.14850 5.19719 5.20816 5.29788 5.37379 5.37956 5.50966 5.55557 5.63613 6.41269 6.46983 7.15349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.122 4.122 8 C 0.149 3.851 9 H 0.063 0.937 10 N -0.706 5.706 11 C 0.569 3.431 12 O -0.560 6.560 13 C -0.167 4.167 14 C -0.140 4.140 15 Cl 0.002 6.998 16 S 0.264 5.736 17 C -0.225 4.225 18 C -0.028 4.028 19 O -0.534 6.534 20 Si 0.704 3.296 21 C -0.068 4.068 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.150 0.850 37 H 0.390 0.610 38 H -0.259 1.259 39 H -0.268 1.268 40 H 0.180 0.820 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 3.181 5.031 5.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.148 4.148 7 C -0.160 4.160 8 C 0.045 3.955 9 H 0.082 0.918 10 N -0.358 5.358 11 C 0.355 3.645 12 O -0.440 6.440 13 C -0.186 4.186 14 C -0.287 4.287 15 Cl 0.031 6.969 16 S 0.529 5.471 17 C -0.342 4.342 18 C -0.140 4.140 19 O -0.343 6.343 20 Si 0.606 3.394 21 C -0.097 4.097 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.168 0.832 37 H 0.240 0.760 38 H -0.185 1.185 39 H -0.193 1.193 40 H 0.197 0.803 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.492 1.243 5.587 5.745 hybrid contribution 0.454 1.534 -1.432 2.147 sum 0.946 2.777 4.155 5.086 Atomic orbital electron populations 1.21906 0.95357 1.01760 1.01776 1.21127 0.95696 0.96378 0.97860 1.21895 1.01405 0.95544 1.01770 1.21190 0.95195 0.94831 0.98290 0.90503 1.21576 1.00815 0.95433 0.97022 1.21836 0.94877 0.99943 0.99380 1.20990 0.93872 0.93261 0.87377 0.91840 1.45829 1.66599 1.05764 1.17619 1.17723 0.77472 0.82798 0.86511 1.90854 1.51185 1.66731 1.35224 1.20361 1.09554 0.91696 0.97036 1.25822 1.08447 0.95286 0.99119 1.98425 1.92826 1.59099 1.46593 1.83262 1.58773 1.06220 0.98819 1.24886 1.10695 0.96206 1.02441 1.24488 0.92625 1.03453 0.93428 1.86618 1.25327 1.40600 1.81735 0.94533 0.88042 0.77984 0.78870 1.21118 0.97823 1.01898 0.88856 1.21760 1.01160 0.92614 1.00037 1.21595 0.95048 1.01093 0.97200 0.92481 0.92956 0.92606 0.91941 0.91973 0.93067 0.92450 0.91204 0.92912 0.93895 0.90673 0.74965 0.83227 0.76040 1.18458 1.19338 0.80304 0.89720 0.90817 0.90016 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 8.84 71.98 0.64 0.80 16 2 C -0.09 0.14 2.51 -10.79 -0.03 0.11 16 3 C -0.15 0.36 8.84 71.98 0.64 0.99 16 4 C -0.08 0.18 1.78 -10.79 -0.02 0.16 16 5 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 6 C -0.11 -0.03 4.85 30.60 0.15 0.12 16 7 C -0.12 -0.17 5.49 30.59 0.17 0.00 16 8 C 0.15 0.14 2.45 44.99 0.11 0.25 16 9 H 0.06 0.42 7.58 -2.38 -0.02 0.40 16 10 N -0.71 -0.13 5.06 -446.15 -2.26 -2.39 16 11 C 0.57 3.89 7.75 86.55 0.67 4.57 16 12 O -0.56 -8.34 14.57 -4.21 -0.06 -8.40 16 13 C -0.17 -0.53 5.98 -19.84 -0.12 -0.65 16 14 C -0.14 -0.62 6.87 67.35 0.46 -0.16 16 15 Cl 0.00 0.01 27.20 -2.72 -0.07 -0.06 16 16 S 0.26 -0.56 20.17 -56.49 -1.14 -1.70 16 17 C -0.22 1.02 5.68 24.52 0.14 1.16 16 18 C -0.03 0.18 2.95 71.24 0.21 0.39 16 19 O -0.53 2.24 12.85 -148.98 -1.91 0.32 16 20 Si 0.70 -3.99 30.90 68.60 2.12 -1.87 16 21 C -0.07 0.24 9.71 22.70 0.22 0.46 16 22 C -0.12 0.47 5.39 30.59 0.16 0.64 16 23 C -0.11 0.35 4.85 30.59 0.15 0.50 16 24 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.05 -0.03 6.43 -2.39 -0.02 -0.05 16 27 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.06 -0.20 6.43 -2.39 -0.02 -0.21 16 29 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.07 0.01 6.43 -2.39 -0.02 0.00 16 32 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 33 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.07 -0.07 8.14 -2.38 -0.02 -0.08 16 35 H 0.41 -2.49 7.15 -92.71 -0.66 -3.15 16 36 H 0.15 -1.46 7.96 -2.39 -0.02 -1.48 16 37 H 0.39 -3.53 8.70 -74.06 -0.64 -4.18 16 38 H -0.26 0.48 7.11 99.48 0.71 1.19 16 39 H -0.27 -0.24 7.11 99.48 0.71 0.46 16 40 H 0.18 -1.52 7.10 -2.91 -0.02 -1.55 16 41 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.08 -0.38 6.43 -2.38 -0.02 -0.39 16 44 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -15.07 370.81 -0.02 -15.09 By element: Atomic # 1 Polarization: -10.10 SS G_CDS: -0.25 Total: -10.34 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 3.55 Total: 9.34 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -2.26 Total: -2.39 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -1.98 Total: -8.07 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.12 Total: -1.87 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.14 Total: -1.70 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -15.07 -0.02 -15.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_13431040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.017 kcal (2) G-P(sol) polarization free energy of solvation -15.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds