Wall clock time and date at job start Sun Mar 7 2021 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.52998 * 109.47305 * 120.00814 * 2 1 3 5 5 H 1.09000 * 109.46971 * 299.99461 * 4 2 1 6 6 C 1.52997 * 109.47722 * 59.99808 * 4 2 1 7 7 C 1.52993 * 109.47438 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47091 * 299.99888 * 7 6 4 9 9 H 1.09000 * 109.46666 * 300.00126 * 8 7 6 10 10 N 1.46501 * 109.47484 * 180.02562 * 8 7 6 11 11 C 1.34774 * 119.99940 * 84.99520 * 10 8 7 12 12 O 1.21279 * 120.00226 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99719 * 180.02562 * 11 10 8 14 14 C 1.50700 * 109.46820 * 180.02562 * 13 11 10 15 15 C 1.34856 * 125.89027 * 275.02405 * 14 13 11 16 16 C 1.40893 * 107.41387 * 179.97438 * 15 14 13 17 17 C 1.34845 * 107.42021 * 0.02562 * 16 15 14 18 18 C 1.50706 * 125.89207 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47178 * 120.02126 * 18 17 16 20 20 Si 1.86295 * 109.46867 * 0.02562 * 18 17 16 21 21 N 1.36341 * 125.89080 * 95.00333 * 14 13 11 22 22 C 1.52998 * 109.47245 * 59.99664 * 8 7 6 23 23 C 1.52995 * 109.47279 * 300.00560 * 22 8 7 24 24 H 1.08997 * 109.47349 * 59.99918 * 1 2 3 25 25 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46666 * 299.99539 * 1 2 3 27 27 H 1.09007 * 109.47071 * 240.00440 * 2 1 3 28 28 H 1.09000 * 109.47084 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47512 * 300.00360 * 3 2 1 30 30 H 1.09007 * 109.46727 * 60.00230 * 3 2 1 31 31 H 1.09000 * 109.46727 * 300.00253 * 6 4 2 32 32 H 1.09000 * 109.47181 * 59.99782 * 6 4 2 33 33 H 1.09002 * 109.47445 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47468 * 59.99522 * 7 6 4 35 35 H 0.97004 * 119.99672 * 265.00128 * 10 8 7 36 36 H 1.08998 * 109.46798 * 60.00514 * 13 11 10 37 37 H 1.08995 * 109.47176 * 300.00044 * 13 11 10 38 38 H 1.07999 * 126.28963 * 359.97438 * 15 14 13 39 39 H 1.07995 * 126.28880 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.46682 * 240.01968 * 18 17 16 41 41 H 0.96695 * 113.99558 * 300.00154 * 19 18 17 42 42 H 1.48496 * 109.99974 * 180.02562 * 20 18 17 43 43 H 1.48505 * 109.99972 * 301.31802 * 20 18 17 44 44 H 0.97006 * 125.63619 * 0.27697 * 21 14 13 45 45 H 1.09007 * 109.46727 * 60.00230 * 22 8 7 46 46 H 1.08993 * 109.47699 * 179.97438 * 22 8 7 47 47 H 1.09002 * 109.47374 * 179.97438 * 23 22 8 48 48 H 1.08996 * 109.47439 * 299.99461 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5301 -2.1639 1.2491 7 6 2.0397 -2.8850 2.4985 8 6 3.5697 -2.8850 2.4990 9 1 3.9333 -3.3989 1.6092 10 7 4.0577 -3.5761 3.6951 11 6 4.1864 -4.9177 3.6928 12 8 3.8986 -5.5528 2.7006 13 6 4.6878 -5.6286 4.9234 14 6 4.7392 -7.1116 4.6608 15 6 3.7111 -7.9741 4.7938 16 6 4.1878 -9.2546 4.4497 17 6 5.4890 -9.1259 4.1203 18 6 6.4050 -10.2411 3.6861 19 8 6.9010 -9.9667 2.3743 20 14 5.4625 -11.8480 3.6699 21 7 5.8331 -7.8127 4.2476 22 6 4.0797 -1.4426 2.4990 23 6 3.5701 -0.7214 1.2496 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.4401 -2.1639 1.2491 32 1 1.8934 -2.6777 0.3590 33 1 1.6768 -3.9129 2.4982 34 1 1.6761 -2.3711 3.3883 35 1 4.2881 -3.0680 4.4886 36 1 4.0146 -5.4300 5.7573 37 1 5.6868 -5.2686 5.1692 38 1 2.7070 -7.7285 5.1064 39 1 3.6162 -10.1709 4.4506 40 1 7.2405 -10.3167 4.3820 41 1 6.2109 -9.8860 1.7018 42 1 6.3548 -12.9559 3.2440 43 1 4.9143 -12.1289 5.0212 44 1 6.7121 -7.4396 4.0765 45 1 3.7161 -0.9287 3.3889 46 1 5.1697 -1.4425 2.4999 47 1 3.9331 0.3064 1.2499 48 1 3.9337 -1.2352 0.3598 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_14644196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:55 Heat of formation + Delta-G solvation = -50.734090 kcal Electronic energy + Delta-G solvation = -25535.953404 eV Core-core repulsion = 21977.748351 eV Total energy + Delta-G solvation = -3558.205053 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33952 -41.01953 -39.65312 -37.71899 -36.64079 -34.18676 -32.98633 -31.93078 -31.90357 -30.02773 -28.71996 -28.00875 -25.30779 -23.81784 -23.45663 -21.77311 -21.36173 -21.29236 -20.88907 -20.57013 -18.95750 -18.08653 -17.55090 -16.81359 -16.50352 -16.22254 -16.07403 -15.40888 -15.22856 -15.12868 -15.03229 -14.66122 -14.57724 -14.44680 -14.21475 -14.11164 -14.08780 -13.90162 -13.52937 -13.35304 -13.07246 -12.84508 -12.69658 -12.61382 -12.27375 -12.09591 -12.07986 -12.03114 -12.00121 -11.61768 -11.32338 -11.19593 -10.94833 -10.79333 -10.65628 -10.01201 -9.80610 -8.96221 -4.93798 1.09771 1.29312 1.64909 1.67175 1.88497 1.91131 2.32211 2.51045 3.48804 3.64762 3.69280 3.70740 3.77775 3.80042 4.03748 4.05748 4.13916 4.21493 4.31107 4.34140 4.37684 4.39403 4.48170 4.53477 4.55632 4.61516 4.67020 4.68399 4.78635 4.81119 4.82884 5.01805 5.02714 5.05799 5.10025 5.15457 5.19930 5.21235 5.24720 5.27948 5.30276 5.37665 5.39667 5.55266 5.56431 5.63596 5.99028 6.12784 6.55991 6.63047 6.67393 7.30004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.076 4.076 5 H 0.076 0.924 6 C -0.111 4.111 7 C -0.122 4.122 8 C 0.148 3.852 9 H 0.058 0.942 10 N -0.716 5.716 11 C 0.510 3.490 12 O -0.574 6.574 13 C -0.067 4.067 14 C 0.033 3.967 15 C -0.201 4.201 16 C -0.203 4.203 17 C -0.021 4.021 18 C -0.054 4.054 19 O -0.561 6.561 20 Si 0.800 3.200 21 N -0.537 5.537 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.416 0.584 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.108 0.892 41 H 0.395 0.605 42 H -0.293 1.293 43 H -0.284 1.284 44 H 0.418 0.582 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 5.454 2.606 6.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.160 4.160 8 C 0.044 3.956 9 H 0.076 0.924 10 N -0.368 5.368 11 C 0.297 3.703 12 O -0.453 6.453 13 C -0.108 4.108 14 C -0.081 4.081 15 C -0.225 4.225 16 C -0.227 4.227 17 C -0.134 4.134 18 C -0.164 4.164 19 O -0.368 6.368 20 Si 0.704 3.296 21 N -0.132 5.132 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.125 0.875 41 H 0.244 0.756 42 H -0.220 1.220 43 H -0.210 1.210 44 H 0.256 0.744 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.108 4.252 2.498 4.933 hybrid contribution 0.746 0.635 0.372 1.048 sum 0.639 4.887 2.870 5.703 Atomic orbital electron populations 1.21906 0.95337 1.01776 1.01779 1.21132 0.95719 0.96373 0.97884 1.21895 1.01386 0.95558 1.01773 1.21181 0.95200 0.94848 0.98235 0.90547 1.21578 1.00803 0.95436 0.97135 1.21831 0.95112 0.99867 0.99222 1.20908 0.93730 0.93177 0.87814 0.92399 1.45995 1.67073 1.06400 1.17381 1.20997 0.77070 0.82572 0.89675 1.90745 1.51043 1.66835 1.36680 1.20251 1.06130 0.87587 0.96794 1.19920 0.87764 0.93690 1.06711 1.20843 0.98966 0.92998 1.09708 1.20905 0.93894 0.98975 1.08976 1.20991 0.96328 0.85683 1.10429 1.24987 1.01038 1.04244 0.86090 1.86425 1.38481 1.94653 1.17261 0.92899 0.82306 0.70868 0.83490 1.41883 1.11811 1.07037 1.52501 1.21751 1.01097 0.92837 0.99857 1.21600 0.95066 1.01074 0.97320 0.92956 0.92585 0.92480 0.91987 0.91996 0.93068 0.92450 0.91272 0.93056 0.93894 0.90661 0.74648 0.84053 0.85571 0.84226 0.83114 0.87503 0.75551 1.22014 1.21014 0.74440 0.89734 0.90846 0.90133 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 8.84 71.98 0.64 0.86 16 2 C -0.09 0.17 2.51 -10.79 -0.03 0.15 16 3 C -0.15 0.41 8.84 71.98 0.64 1.04 16 4 C -0.08 0.22 1.77 -10.79 -0.02 0.20 16 5 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 6 C -0.11 0.04 4.85 30.59 0.15 0.18 16 7 C -0.12 -0.03 5.49 30.59 0.17 0.14 16 8 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 9 H 0.06 0.33 7.58 -2.39 -0.02 0.31 16 10 N -0.72 2.43 5.08 -442.53 -2.25 0.19 16 11 C 0.51 1.06 7.79 87.66 0.68 1.75 16 12 O -0.57 -7.26 15.70 -3.03 -0.05 -7.31 16 13 C -0.07 0.26 6.24 29.10 0.18 0.44 16 14 C 0.03 0.11 5.66 41.08 0.23 0.34 16 15 C -0.20 -1.18 10.77 22.14 0.24 -0.95 16 16 C -0.20 -1.08 9.37 22.14 0.21 -0.87 16 17 C -0.02 -0.09 6.50 41.08 0.27 0.17 16 18 C -0.05 -0.12 3.08 71.24 0.22 0.10 16 19 O -0.56 -1.80 12.88 -148.98 -1.92 -3.72 16 20 Si 0.80 0.17 30.58 68.60 2.10 2.27 16 21 N -0.54 -1.83 6.07 -171.11 -1.04 -2.87 16 22 C -0.12 0.61 5.39 30.59 0.16 0.77 16 23 C -0.11 0.42 4.85 30.59 0.15 0.57 16 24 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.06 -0.06 6.43 -2.39 -0.02 -0.07 16 26 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 28 H 0.06 -0.22 6.43 -2.39 -0.02 -0.23 16 29 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.07 -0.02 6.43 -2.39 -0.02 -0.04 16 32 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.42 -4.26 8.60 -92.71 -0.80 -5.06 16 36 H 0.14 -1.25 8.14 -2.39 -0.02 -1.27 16 37 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 38 H 0.14 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.15 0.27 6.22 -2.91 -0.02 0.25 16 40 H 0.11 0.24 7.96 -2.39 -0.02 0.22 16 41 H 0.39 -1.14 8.70 -74.06 -0.64 -1.79 16 42 H -0.29 -1.84 7.11 99.48 0.71 -1.13 16 43 H -0.28 -1.41 7.11 99.48 0.71 -0.70 16 44 H 0.42 0.04 8.96 -92.70 -0.83 -0.79 16 45 H 0.08 -0.66 8.14 -2.38 -0.02 -0.68 16 46 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.08 -0.41 6.43 -2.39 -0.02 -0.43 16 48 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -19.40 374.73 -0.43 -19.83 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: -1.27 Total: -13.31 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.00 Total: 4.92 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -3.29 Total: -2.68 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.97 Total: -11.02 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: 2.10 Total: 2.27 kcal Total: -19.40 -0.43 -19.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_14644196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.905 kcal (2) G-P(sol) polarization free energy of solvation -19.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds