Wall clock time and date at job start Sun Mar 7 2021 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.47628 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46806 * 300.00074 * 7 6 4 9 9 H 1.08992 * 109.47399 * 299.99952 * 8 7 6 10 10 N 1.46499 * 109.46840 * 179.97438 * 8 7 6 11 11 C 1.34781 * 119.99874 * 85.00543 * 10 8 7 12 12 O 1.21278 * 120.00033 * 359.97438 * 11 10 8 13 13 C 1.50703 * 120.00101 * 179.97438 * 11 10 8 14 14 C 1.53537 * 109.82067 * 279.13760 * 13 11 10 15 15 C 1.53040 * 108.56265 * 179.57517 * 14 13 11 16 16 C 1.50202 * 110.36494 * 49.46709 * 15 14 13 17 17 C 1.50691 * 118.54717 * 159.96663 * 16 15 14 18 18 O 1.42903 * 109.47321 * 70.02610 * 17 16 15 19 19 Si 1.86306 * 109.47404 * 190.02141 * 17 16 15 20 20 C 1.31117 * 122.90366 * 339.99353 * 16 15 14 21 21 N 1.38921 * 121.85299 * 0.40401 * 20 16 15 22 22 C 1.53002 * 109.46911 * 59.99917 * 8 7 6 23 23 C 1.52992 * 109.47482 * 300.00014 * 4 2 1 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 6 4 2 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 4 2 33 33 H 1.09001 * 109.47142 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46838 * 59.99718 * 7 6 4 35 35 H 0.97002 * 120.00410 * 264.99761 * 10 8 7 36 36 H 1.09001 * 109.80977 * 39.99356 * 13 11 10 37 37 H 1.09009 * 109.61952 * 299.23250 * 14 13 11 38 38 H 1.08997 * 109.62544 * 59.78488 * 14 13 11 39 39 H 1.08996 * 109.26747 * 289.21418 * 15 14 13 40 40 H 1.09003 * 109.20261 * 169.67629 * 15 14 13 41 41 H 1.08999 * 109.47613 * 310.02239 * 17 16 15 42 42 H 0.96693 * 114.00444 * 179.97438 * 18 17 16 43 43 H 1.48500 * 110.00160 * 178.68257 * 19 17 16 44 44 H 1.48504 * 109.99917 * 300.00421 * 19 17 16 45 45 H 1.08005 * 119.07462 * 180.42456 * 20 16 15 46 46 H 0.96998 * 120.56116 * 166.70416 * 21 20 16 47 47 H 1.09004 * 109.46930 * 179.97438 * 22 8 7 48 48 H 1.09002 * 109.47067 * 59.99825 * 22 8 7 49 49 H 1.09002 * 109.47103 * 300.00247 * 23 4 2 50 50 H 1.09001 * 109.47066 * 60.00169 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 6 4.0799 -1.4414 -2.4993 8 6 3.5704 -2.8840 -2.4996 9 1 3.9341 -3.3980 -1.6100 10 7 4.0582 -3.5739 -3.6964 11 6 5.2804 -4.1421 -3.6956 12 8 5.9765 -4.0819 -2.7043 13 6 5.7820 -4.8523 -4.9265 14 6 5.1917 -6.2683 -4.9875 15 6 5.7104 -6.9583 -6.2512 16 6 7.2024 -6.8159 -6.3497 17 6 7.9609 -7.7755 -7.2298 18 8 7.6662 -7.4992 -8.6006 19 14 9.7896 -7.5754 -6.9354 20 6 7.8740 -5.8938 -5.7033 21 7 7.2456 -4.9799 -4.8669 22 6 2.0404 -2.8845 -2.4993 23 6 1.5300 -2.1636 -1.2494 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 3.9330 0.3071 -1.2498 32 1 3.9336 -1.2344 -0.3597 33 1 5.1699 -1.4414 -2.4993 34 1 3.7162 -0.9274 -3.3890 35 1 3.5016 -3.6218 -4.4894 36 1 5.4956 -4.2938 -5.8177 37 1 5.5037 -6.8331 -4.1089 38 1 4.1038 -6.2103 -5.0213 39 1 5.2459 -6.5031 -7.1259 40 1 5.4506 -8.0163 -6.2143 41 1 7.6645 -8.7974 -6.9933 42 1 8.1214 -8.0799 -9.2256 43 1 10.5475 -8.5383 -7.7742 44 1 10.2064 -6.1862 -7.2543 45 1 8.9460 -5.8433 -5.8247 46 1 7.7635 -4.4349 -4.2541 47 1 1.6774 -3.9123 -2.4999 48 1 1.6767 -2.3705 -3.3890 49 1 1.8933 -2.6775 -0.3594 50 1 0.4400 -2.1636 -1.2494 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:06:59 Heat of formation + Delta-G solvation = -70.257327 kcal Electronic energy + Delta-G solvation = -26393.173509 eV Core-core repulsion = 22806.810386 eV Total energy + Delta-G solvation = -3586.363123 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.209 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56368 -40.24655 -39.25059 -37.53124 -36.67732 -34.30036 -33.31022 -32.91296 -31.91156 -29.65077 -28.01386 -27.33278 -25.38862 -24.14430 -23.47276 -23.27926 -21.62090 -21.20428 -20.60455 -19.09662 -19.07482 -18.40579 -17.51452 -17.50357 -16.62459 -16.14243 -15.88399 -15.43143 -15.40266 -15.17829 -15.10010 -14.78683 -14.57405 -14.46837 -14.30398 -14.26535 -13.96397 -13.83712 -13.64844 -13.37511 -13.07895 -12.91548 -12.77601 -12.65961 -12.44298 -12.29618 -12.09919 -12.03705 -11.77203 -11.71285 -11.62238 -11.32445 -11.25991 -11.17073 -10.95937 -10.75384 -10.26607 -10.09557 -8.47133 -4.90652 1.30394 1.39234 1.46519 1.58153 1.89616 1.95075 2.62534 3.48368 3.62228 3.66289 3.71114 3.74184 3.83124 3.92275 4.02521 4.04610 4.12603 4.24302 4.29731 4.32940 4.38457 4.46081 4.51119 4.54559 4.59745 4.64392 4.65756 4.67519 4.78614 4.80519 4.82411 5.00185 5.01740 5.02057 5.04012 5.09012 5.14264 5.19293 5.20462 5.23952 5.28938 5.29347 5.36938 5.37440 5.49304 5.55092 5.56985 5.63159 6.25261 6.46688 6.70306 6.80845 7.12044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.123 4.123 8 C 0.148 3.852 9 H 0.065 0.935 10 N -0.709 5.709 11 C 0.514 3.486 12 O -0.571 6.571 13 C 0.137 3.863 14 C -0.119 4.119 15 C -0.052 4.052 16 C -0.247 4.247 17 C -0.057 4.057 18 O -0.562 6.562 19 Si 0.740 3.260 20 C 0.135 3.865 21 N -0.736 5.736 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.417 0.583 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.387 0.613 43 H -0.293 1.293 44 H -0.301 1.301 45 H 0.138 0.862 46 H 0.407 0.593 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -0.503 -0.249 4.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.162 4.162 8 C 0.044 3.956 9 H 0.083 0.917 10 N -0.361 5.361 11 C 0.300 3.700 12 O -0.450 6.450 13 C 0.028 3.972 14 C -0.158 4.158 15 C -0.089 4.089 16 C -0.257 4.257 17 C -0.168 4.168 18 O -0.371 6.371 19 Si 0.648 3.352 20 C 0.014 3.986 21 N -0.369 5.369 22 C -0.156 4.156 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.236 0.764 43 H -0.221 1.221 44 H -0.229 1.229 45 H 0.154 0.846 46 H 0.243 0.757 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.722 0.191 0.364 3.745 hybrid contribution 0.156 0.005 -1.259 1.268 sum -3.566 0.196 -0.895 3.682 Atomic orbital electron populations 1.21896 0.94867 1.02139 1.01730 1.21130 0.96006 0.96016 0.97920 1.21908 1.01102 0.96081 1.01736 1.21187 0.94305 0.95856 0.98202 0.90684 1.21578 0.95803 1.00428 0.97092 1.21846 0.99716 0.95278 0.99313 1.20986 0.95032 0.92065 0.87555 0.91725 1.45956 1.17087 1.55343 1.17671 1.20804 0.81940 0.78004 0.89211 1.90715 1.57261 1.60889 1.36144 1.21099 0.82795 0.97834 0.95515 1.21850 1.01614 0.93052 0.99281 1.19964 0.91284 1.01183 0.96460 1.20152 0.96883 1.01534 1.07127 1.24709 1.09487 1.00353 0.82220 1.86574 1.71618 1.62527 1.16403 0.94501 0.73681 0.76427 0.90615 1.20515 0.96775 0.89017 0.92265 1.44339 1.04765 1.43655 1.44145 1.21775 0.91997 1.01969 0.99891 1.21606 1.01361 0.94707 0.97332 0.93083 0.92539 0.91900 0.91838 0.92962 0.92586 0.92580 0.91328 0.92775 0.93803 0.90830 0.74633 0.87965 0.91629 0.88078 0.91713 0.90281 0.90033 0.76415 1.22052 1.22902 0.84553 0.75657 0.90509 0.89855 0.92355 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 8.84 71.98 0.64 1.08 16 2 C -0.09 0.21 2.51 -10.79 -0.03 0.18 16 3 C -0.15 0.25 8.84 71.98 0.64 0.89 16 4 C -0.08 0.25 1.77 -10.80 -0.02 0.24 16 5 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 6 C -0.11 0.10 4.85 30.59 0.15 0.25 16 7 C -0.12 0.03 5.49 30.60 0.17 0.20 16 8 C 0.15 -0.19 2.45 44.99 0.11 -0.08 16 9 H 0.06 0.27 7.58 -2.39 -0.02 0.25 16 10 N -0.71 2.14 5.08 -442.53 -2.25 -0.11 16 11 C 0.51 1.29 7.05 87.66 0.62 1.91 16 12 O -0.57 -6.26 15.75 -3.02 -0.05 -6.31 16 13 C 0.14 -0.02 3.36 44.33 0.15 0.13 16 14 C -0.12 0.22 5.48 30.79 0.17 0.38 16 15 C -0.05 -0.01 5.85 29.71 0.17 0.16 16 16 C -0.25 -0.66 5.40 -16.76 -0.09 -0.75 16 17 C -0.06 -0.07 2.80 71.23 0.20 0.13 16 18 O -0.56 -2.16 12.86 -148.98 -1.92 -4.07 16 19 Si 0.74 0.30 29.92 68.60 2.05 2.35 16 20 C 0.14 0.37 9.61 83.41 0.80 1.17 16 21 N -0.74 -2.02 5.47 -329.01 -1.80 -3.82 16 22 C -0.12 0.67 5.39 30.61 0.17 0.84 16 23 C -0.11 0.49 4.86 30.61 0.15 0.64 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.06 -0.18 8.14 -2.39 -0.02 -0.19 16 26 H 0.06 -0.24 6.43 -2.39 -0.02 -0.26 16 27 H 0.06 -0.06 8.14 -2.39 -0.02 -0.07 16 28 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 -0.07 6.43 -2.39 -0.02 -0.08 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.07 -0.05 6.43 -2.39 -0.02 -0.07 16 32 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.42 -3.75 8.60 -92.71 -0.80 -4.55 16 36 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 38 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 42 H 0.39 -1.36 8.74 -74.06 -0.65 -2.01 16 43 H -0.29 -1.46 7.11 99.48 0.71 -0.75 16 44 H -0.30 -2.16 6.88 99.48 0.68 -1.47 16 45 H 0.14 0.14 4.34 -2.91 -0.01 0.13 16 46 H 0.41 1.38 8.10 -92.71 -0.75 0.63 16 47 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 48 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.08 -0.46 6.43 -2.39 -0.02 -0.47 16 Total: 0.00 -15.32 377.07 -1.21 -16.54 By element: Atomic # 1 Polarization: -10.70 SS G_CDS: -1.25 Total: -11.94 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 3.99 Total: 7.36 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -4.04 Total: -3.93 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.96 Total: -10.38 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.05 Total: 2.35 kcal Total: -15.32 -1.21 -16.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.722 kcal (2) G-P(sol) polarization free energy of solvation -15.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds