Wall clock time and date at job start Sun Mar 7 2021 02:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 C 1.53005 * 109.46922 * 120.00048 * 2 1 3 5 5 H 1.08996 * 109.46865 * 299.99966 * 4 2 1 6 6 C 1.52995 * 109.47190 * 59.99905 * 4 2 1 7 7 C 1.52995 * 109.47251 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.46932 * 300.00139 * 7 6 4 9 9 H 1.08996 * 109.47323 * 299.99605 * 8 7 6 10 10 N 1.46504 * 109.46980 * 179.97438 * 8 7 6 11 11 C 1.34781 * 119.99384 * 85.00283 * 10 8 7 12 12 O 1.21272 * 120.00505 * 359.97438 * 11 10 8 13 13 C 1.50706 * 119.99758 * 179.97438 * 11 10 8 14 14 C 1.53037 * 109.32949 * 179.13428 * 13 11 10 15 15 C 1.53549 * 108.55866 * 169.82861 * 14 13 11 16 16 N 1.47024 * 107.65883 * 299.05196 * 15 14 13 17 17 C 1.38921 * 118.93010 * 43.43642 * 16 15 14 18 18 C 1.31116 * 121.85125 * 347.17977 * 17 16 15 19 19 C 1.50694 * 118.54437 * 180.17014 * 18 17 16 20 20 O 1.42901 * 109.47118 * 249.72538 * 19 18 17 21 21 Si 1.86298 * 109.47775 * 9.72783 * 19 18 17 22 22 C 1.52995 * 109.47266 * 59.99871 * 8 7 6 23 23 C 1.52995 * 109.47251 * 299.99934 * 22 8 7 24 24 H 1.09001 * 109.47061 * 299.99873 * 1 2 3 25 25 H 1.08999 * 109.47155 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46654 * 239.99780 * 2 1 3 28 28 H 1.09004 * 109.47218 * 59.99356 * 3 2 1 29 29 H 1.08995 * 109.47636 * 179.97438 * 3 2 1 30 30 H 1.09009 * 109.47026 * 300.00053 * 3 2 1 31 31 H 1.09002 * 109.47303 * 299.99664 * 6 4 2 32 32 H 1.09001 * 109.46976 * 59.99809 * 6 4 2 33 33 H 1.09003 * 109.47766 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47166 * 59.99476 * 7 6 4 35 35 H 0.96992 * 120.00379 * 264.99745 * 10 8 7 36 36 H 1.09003 * 109.18499 * 59.56486 * 13 11 10 37 37 H 1.08993 * 109.62291 * 289.55367 * 14 13 11 38 38 H 1.08999 * 109.61771 * 50.11070 * 14 13 11 39 39 H 1.08998 * 109.82054 * 58.59150 * 15 14 13 40 40 H 1.09002 * 109.81611 * 179.51163 * 15 14 13 41 41 H 0.97003 * 120.55920 * 223.64505 * 16 15 14 42 42 H 1.08007 * 119.07285 * 166.94088 * 17 16 15 43 43 H 1.09004 * 109.47407 * 129.72895 * 19 18 17 44 44 H 0.96708 * 114.00246 * 180.02562 * 20 19 18 45 45 H 1.48506 * 109.99834 * 300.00486 * 21 19 18 46 46 H 1.48502 * 110.00011 * 61.31751 * 21 19 18 47 47 H 1.09002 * 109.47463 * 60.00276 * 22 8 7 48 48 H 1.08998 * 109.47483 * 179.97438 * 22 8 7 49 49 H 1.09003 * 109.47766 * 180.02562 * 23 22 8 50 50 H 1.09001 * 109.47246 * 299.99976 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 2.0404 -2.8852 2.4982 8 6 3.5705 -2.8852 2.4975 9 1 3.9335 -3.3989 1.6074 10 7 4.0593 -3.5755 3.6937 11 6 4.1880 -4.9171 3.6921 12 8 3.8988 -5.5529 2.7007 13 6 4.6914 -5.6273 4.9224 14 6 4.7209 -7.1348 4.6607 15 6 5.4687 -7.8167 5.8154 16 7 6.8385 -7.2830 5.8365 17 6 7.0301 -5.9170 5.6715 18 6 6.0684 -5.1286 5.2557 19 6 6.3595 -3.6584 5.0994 20 8 5.6573 -2.9243 6.1044 21 14 8.1902 -3.3648 5.2812 22 6 4.0805 -1.4427 2.4975 23 6 3.5700 -0.7213 1.2487 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 0.4400 -2.1637 1.2493 32 1 1.8933 -2.6775 0.3593 33 1 1.6767 -3.9127 2.4985 34 1 1.6775 -2.3714 3.3884 35 1 4.2903 -3.0670 4.4867 36 1 4.0206 -5.4188 5.7559 37 1 3.7016 -7.5172 4.6082 38 1 5.2379 -7.3332 3.7219 39 1 4.9713 -7.5956 6.7596 40 1 5.4944 -8.8944 5.6537 41 1 7.5967 -7.8752 5.9605 42 1 7.9973 -5.4918 5.8957 43 1 6.0345 -3.3264 4.1133 44 1 5.7981 -1.9684 6.0640 45 1 8.6458 -3.8132 6.6216 46 1 8.9297 -4.0974 4.2221 47 1 3.7176 -0.9290 3.3878 48 1 5.1705 -1.4427 2.4975 49 1 3.9337 0.3063 1.2483 50 1 3.9330 -1.2350 0.3584 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_15608500.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:02 Heat of formation + Delta-G solvation = -61.444750 kcal Electronic energy + Delta-G solvation = -27654.100824 eV Core-core repulsion = 24068.119843 eV Total energy + Delta-G solvation = -3585.980981 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.209 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77016 -40.21883 -39.12299 -37.74031 -36.55597 -34.30187 -33.33324 -32.93243 -31.88034 -29.52953 -27.98311 -27.31024 -25.91747 -23.78899 -23.43907 -23.18381 -21.65639 -21.16518 -20.57986 -19.29739 -18.81730 -18.47358 -17.80580 -17.54468 -16.72212 -16.19801 -15.78621 -15.52501 -15.18786 -15.12823 -15.05756 -14.88946 -14.72301 -14.40502 -14.39665 -14.18882 -13.85473 -13.74766 -13.64432 -13.33179 -13.04244 -12.95211 -12.69524 -12.61390 -12.36411 -12.24566 -12.06756 -12.02678 -11.98035 -11.74994 -11.58354 -11.53678 -11.28851 -11.15681 -10.91695 -10.73757 -10.32777 -9.78943 -8.61415 -4.94602 1.05224 1.31241 1.63381 1.65065 1.95240 2.25724 2.47366 3.43267 3.55200 3.66097 3.71203 3.73269 3.82428 3.95257 4.06807 4.09360 4.15033 4.18407 4.25338 4.33497 4.36469 4.41828 4.47417 4.53110 4.57570 4.59831 4.67678 4.68335 4.71297 4.74160 4.84050 4.85637 5.04280 5.05124 5.05271 5.08415 5.12442 5.14576 5.17957 5.22556 5.24954 5.29119 5.32829 5.40506 5.42491 5.58242 5.58695 5.66785 6.12935 6.55374 6.74891 6.97191 7.25526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.077 4.077 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.123 4.123 8 C 0.141 3.859 9 H 0.060 0.940 10 N -0.712 5.712 11 C 0.522 3.478 12 O -0.584 6.584 13 C -0.037 4.037 14 C -0.120 4.120 15 C 0.123 3.877 16 N -0.748 5.748 17 C 0.138 3.862 18 C -0.251 4.251 19 C -0.071 4.071 20 O -0.557 6.557 21 Si 0.759 3.241 22 C -0.120 4.120 23 C -0.111 4.111 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.411 0.589 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.400 0.600 45 H -0.288 1.288 46 H -0.301 1.301 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 5.241 2.795 6.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.148 4.148 7 C -0.162 4.162 8 C 0.036 3.964 9 H 0.078 0.922 10 N -0.368 5.368 11 C 0.309 3.691 12 O -0.464 6.464 13 C -0.058 4.058 14 C -0.159 4.159 15 C -0.001 4.001 16 N -0.379 5.379 17 C 0.015 3.985 18 C -0.262 4.262 19 C -0.182 4.182 20 O -0.366 6.366 21 Si 0.667 3.333 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.259 0.741 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.247 0.753 42 H 0.142 0.858 43 H 0.100 0.900 44 H 0.250 0.750 45 H -0.216 1.216 46 H -0.229 1.229 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.152 3.831 2.428 5.020 hybrid contribution -0.123 -0.818 0.050 0.828 sum 2.029 3.014 2.479 4.398 Atomic orbital electron populations 1.21912 0.95543 1.01646 1.01759 1.21125 0.95553 0.96511 0.97840 1.21892 1.01556 0.95363 1.01750 1.21189 0.95519 0.94527 0.98270 0.90491 1.21574 1.00685 0.95707 0.96865 1.21844 0.95290 0.99669 0.99363 1.21048 0.93749 0.93843 0.87712 0.92189 1.46534 1.65955 1.06579 1.17770 1.20813 0.76143 0.82994 0.89117 1.90668 1.52129 1.67064 1.36535 1.19701 0.95395 0.95283 0.95422 1.21711 1.01883 0.93321 0.98998 1.21718 0.81758 0.99091 0.97547 1.44626 1.08676 1.04664 1.79897 1.20416 0.97532 0.85507 0.95009 1.19875 0.96023 0.94464 1.15834 1.24805 1.08942 0.89974 0.94454 1.86480 1.72101 1.24482 1.53522 0.94515 0.73204 0.89600 0.75994 1.21807 1.01684 0.92174 1.00100 1.21600 0.94750 1.01332 0.97222 0.92489 0.92965 0.92787 0.92002 0.92413 0.91710 0.93149 0.91414 0.93020 0.94334 0.90900 0.74053 0.87909 0.89944 0.92454 0.91273 0.87824 0.75275 0.85785 0.89984 0.74956 1.21569 1.22917 0.89498 0.89893 0.89544 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.16 8.84 71.98 0.64 0.79 16 2 C -0.09 0.16 2.51 -10.79 -0.03 0.14 16 3 C -0.15 0.46 8.84 71.98 0.64 1.10 16 4 C -0.08 0.20 1.78 -10.79 -0.02 0.18 16 5 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 6 C -0.11 -0.09 4.85 30.59 0.15 0.06 16 7 C -0.12 -0.32 5.49 30.59 0.17 -0.16 16 8 C 0.14 0.25 2.45 44.99 0.11 0.36 16 9 H 0.06 0.45 7.58 -2.39 -0.02 0.43 16 10 N -0.71 -1.64 3.38 -442.53 -1.50 -3.13 16 11 C 0.52 4.53 6.78 87.66 0.59 5.13 16 12 O -0.58 -9.80 15.46 -3.01 -0.05 -9.85 16 13 C -0.04 -0.20 2.74 -12.43 -0.03 -0.23 16 14 C -0.12 -0.58 4.91 30.79 0.15 -0.43 16 15 C 0.12 -0.02 7.16 86.46 0.62 0.60 16 16 N -0.75 -0.82 5.83 -345.89 -2.02 -2.83 16 17 C 0.14 0.55 9.61 83.41 0.80 1.35 16 18 C -0.25 -1.05 5.07 -16.76 -0.08 -1.13 16 19 C -0.07 0.09 1.68 71.23 0.12 0.21 16 20 O -0.56 2.51 11.37 -148.98 -1.69 0.82 16 21 Si 0.76 -1.86 29.91 68.60 2.05 0.20 16 22 C -0.12 0.59 5.39 30.59 0.16 0.75 16 23 C -0.11 0.46 4.85 30.59 0.15 0.61 16 24 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.05 -0.01 6.43 -2.39 -0.02 -0.03 16 27 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.06 -0.28 6.43 -2.39 -0.02 -0.29 16 30 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.07 0.06 6.43 -2.39 -0.02 0.05 16 32 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.42 -0.84 5.22 -92.71 -0.48 -1.32 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.06 0.55 7.75 -2.39 -0.02 0.53 16 39 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.41 -1.22 8.96 -92.71 -0.83 -2.05 16 42 H 0.13 0.39 4.34 -2.91 -0.01 0.38 16 43 H 0.08 -0.17 5.34 -2.38 -0.01 -0.19 16 44 H 0.40 -5.89 8.74 -74.05 -0.65 -6.54 16 45 H -0.29 -0.98 6.89 99.48 0.69 -0.30 16 46 H -0.30 -1.47 7.11 99.48 0.71 -0.77 16 47 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 49 H 0.09 -0.55 6.43 -2.39 -0.02 -0.56 16 50 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -17.57 366.83 -0.07 -17.64 By element: Atomic # 1 Polarization: -11.16 SS G_CDS: -1.00 Total: -12.17 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.13 Total: 9.33 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -3.51 Total: -5.97 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.74 Total: -9.03 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: 2.05 Total: 0.20 kcal Total: -17.57 -0.07 -17.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_15608500.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.801 kcal (2) G-P(sol) polarization free energy of solvation -17.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds