Wall clock time and date at job start Sun Mar 7 2021 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.53000 * 109.47266 * 119.99503 * 2 1 3 5 5 H 1.08998 * 109.47384 * 300.00454 * 4 2 1 6 6 C 1.52999 * 109.47001 * 59.99958 * 4 2 1 7 7 C 1.53009 * 109.47168 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.46932 * 300.00325 * 7 6 4 9 9 H 1.08999 * 109.47409 * 299.99585 * 8 7 6 10 10 N 1.46504 * 109.47009 * 179.97438 * 8 7 6 11 11 C 1.34777 * 119.99854 * 84.99752 * 10 8 7 12 12 O 1.21633 * 119.99979 * 0.02562 * 11 10 8 13 13 C 1.47264 * 119.99990 * 180.27781 * 11 10 8 14 14 C 1.36334 * 126.96810 * 179.72597 * 13 11 10 15 15 C 1.51002 * 126.79486 * 0.03873 * 14 13 11 16 16 C 1.53398 * 108.24821 * 164.27327 * 15 14 13 17 17 C 1.53157 * 109.03983 * 48.48156 * 16 15 14 18 18 C 1.53135 * 109.52676 * 290.42113 * 17 16 15 19 19 N 1.35213 * 108.66302 * 180.02562 * 14 13 11 20 20 C 1.36429 * 109.89734 * 359.97438 * 19 14 13 21 21 C 1.50700 * 125.49561 * 180.02562 * 20 19 14 22 22 O 1.42906 * 109.46931 * 30.00632 * 21 20 19 23 23 Si 1.86301 * 109.46879 * 150.00171 * 21 20 19 24 24 C 1.34499 * 109.00935 * 359.72518 * 20 19 14 25 25 C 1.53001 * 109.47151 * 60.00304 * 8 7 6 26 26 C 1.53000 * 109.46945 * 299.99244 * 25 8 7 27 27 H 1.08998 * 109.47289 * 299.99985 * 1 2 3 28 28 H 1.08998 * 109.46911 * 60.00562 * 1 2 3 29 29 H 1.09008 * 109.46553 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47409 * 239.99474 * 2 1 3 31 31 H 1.08998 * 109.46912 * 299.99438 * 3 2 1 32 32 H 1.08999 * 109.47551 * 59.99561 * 3 2 1 33 33 H 1.09002 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47851 * 300.00484 * 6 4 2 35 35 H 1.08999 * 109.47029 * 60.00424 * 6 4 2 36 36 H 1.09001 * 109.46963 * 180.02562 * 7 6 4 37 37 H 1.08999 * 109.46735 * 60.00323 * 7 6 4 38 38 H 0.97000 * 120.00410 * 265.00478 * 10 8 7 39 39 H 1.09001 * 109.70652 * 283.99556 * 15 14 13 40 40 H 1.09005 * 109.70151 * 44.61303 * 15 14 13 41 41 H 1.09005 * 109.55726 * 288.60705 * 16 15 14 42 42 H 1.09003 * 109.60633 * 168.39101 * 16 15 14 43 43 H 1.09001 * 109.46807 * 170.39604 * 17 16 15 44 44 H 1.09006 * 109.45257 * 50.42550 * 17 16 15 45 45 H 1.09005 * 109.55808 * 291.17094 * 18 17 16 46 46 H 1.08997 * 109.66111 * 170.88926 * 18 17 16 47 47 H 1.08988 * 109.47071 * 270.00232 * 21 20 19 48 48 H 0.96698 * 114.00007 * 59.99481 * 22 21 20 49 49 H 1.48504 * 109.99912 * 58.68467 * 23 21 20 50 50 H 1.48504 * 109.99922 * 180.02562 * 23 21 20 51 51 H 1.08001 * 126.81745 * 180.25584 * 24 20 19 52 52 H 1.08998 * 109.47169 * 59.99749 * 25 8 7 53 53 H 1.09002 * 109.46865 * 179.97438 * 25 8 7 54 54 H 1.08995 * 109.47334 * 180.02562 * 26 25 8 55 55 H 1.08999 * 109.47097 * 300.00402 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1636 1.2494 7 6 2.0406 -2.8850 2.4984 8 6 3.5705 -2.8849 2.4978 9 1 3.9336 -3.3987 1.6076 10 7 4.0594 -3.5751 3.6940 11 6 4.1881 -4.9167 3.6926 12 8 3.8989 -5.5544 2.6980 13 6 4.6737 -5.6111 4.8970 14 6 4.8519 -6.9536 5.0537 15 6 4.5908 -8.0268 4.0240 16 6 5.2894 -9.3131 4.4830 17 6 4.9404 -9.5745 5.9512 18 6 5.6186 -8.5227 6.8337 19 7 5.3106 -7.1863 6.3042 20 6 5.4387 -6.0073 6.9786 21 6 5.9223 -5.8593 8.3982 22 8 6.8412 -6.9112 8.7004 23 14 6.7745 -4.2144 8.5955 24 6 5.0700 -4.9977 6.1699 25 6 4.0805 -1.4424 2.4978 26 6 3.5700 -0.7211 1.2487 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4425 0.0005 34 1 0.4401 -2.1638 1.2493 35 1 1.8934 -2.6775 0.3595 36 1 1.6776 -3.9128 2.4982 37 1 1.6776 -2.3712 3.3886 38 1 4.2904 -3.0666 4.4871 39 1 3.5182 -8.2009 3.9384 40 1 4.9914 -7.7157 3.0592 41 1 6.3685 -9.1991 4.3795 42 1 4.9511 -10.1507 3.8730 43 1 5.2889 -10.5672 6.2363 44 1 3.8599 -9.5173 6.0832 45 1 6.6973 -8.6794 6.8247 46 1 5.2462 -8.6054 7.8547 47 1 5.0727 -5.9123 9.0788 48 1 7.6237 -6.9252 8.1323 49 1 5.8388 -3.1133 8.2533 50 1 7.2568 -4.0565 9.9912 51 1 5.0637 -3.9449 6.4107 52 1 3.7175 -0.9287 3.3879 53 1 5.1705 -1.4424 2.4977 54 1 3.9336 0.3064 1.2485 55 1 3.9330 -1.2349 0.3586 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_16915396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:06 Heat of formation + Delta-G solvation = -51.626572 kcal Electronic energy + Delta-G solvation = -31864.888276 eV Core-core repulsion = 27867.343144 eV Total energy + Delta-G solvation = -3997.545133 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.225 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.79966 -40.89858 -39.51435 -37.94361 -36.84881 -36.59586 -34.05307 -33.43641 -31.89883 -31.18789 -30.10951 -28.80183 -28.00267 -26.56902 -24.63628 -24.58674 -23.44402 -23.06186 -21.73233 -21.25067 -20.98520 -20.54372 -19.61434 -18.85293 -17.34580 -17.22178 -16.94555 -16.60971 -16.22397 -15.78133 -15.73000 -15.46705 -15.28494 -15.13896 -15.10897 -15.06943 -14.73044 -14.69996 -14.51388 -14.37170 -14.28500 -14.12568 -13.90055 -13.36253 -13.24165 -13.06787 -12.78335 -12.65490 -12.61891 -12.33865 -12.25858 -12.11233 -12.07824 -12.02632 -11.99755 -11.82959 -11.75689 -11.60709 -11.31445 -11.16165 -10.93034 -10.76056 -10.69850 -10.03798 -9.57721 -9.06291 -4.92563 0.71556 1.06137 1.38803 1.66860 1.81388 2.03131 2.40673 2.54302 3.34546 3.47312 3.57283 3.66554 3.69231 3.71816 3.78320 3.81407 3.82097 4.04427 4.10975 4.19736 4.31327 4.33130 4.34509 4.35666 4.39921 4.40353 4.43964 4.53646 4.56088 4.60911 4.66857 4.69109 4.74236 4.78964 4.81549 4.82012 4.83604 4.95474 5.01363 5.02510 5.03231 5.06328 5.10385 5.13914 5.19137 5.20481 5.21865 5.22392 5.31173 5.38106 5.41074 5.56221 5.60370 5.64497 5.70388 6.02718 6.21489 6.61643 6.67575 7.36473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.109 4.109 7 C -0.122 4.122 8 C 0.150 3.850 9 H 0.064 0.936 10 N -0.715 5.715 11 C 0.588 3.412 12 O -0.588 6.588 13 C -0.256 4.256 14 C 0.106 3.894 15 C -0.053 4.053 16 C -0.122 4.122 17 C -0.136 4.136 18 C 0.105 3.895 19 N -0.424 5.424 20 C -0.009 4.009 21 C -0.046 4.046 22 O -0.552 6.552 23 Si 0.796 3.204 24 C -0.173 4.173 25 C -0.118 4.118 26 C -0.110 4.110 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.409 0.591 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.394 0.606 49 H -0.274 1.274 50 H -0.293 1.293 51 H 0.162 0.838 52 H 0.079 0.921 53 H 0.075 0.925 54 H 0.082 0.918 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 0.978 2.341 4.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.092 0.908 6 C -0.147 4.147 7 C -0.161 4.161 8 C 0.046 3.954 9 H 0.082 0.918 10 N -0.365 5.365 11 C 0.378 3.622 12 O -0.470 6.470 13 C -0.265 4.265 14 C -0.013 4.013 15 C -0.091 4.091 16 C -0.160 4.160 17 C -0.174 4.174 18 C -0.015 4.015 19 N -0.100 5.100 20 C -0.118 4.118 21 C -0.156 4.156 22 O -0.359 6.359 23 Si 0.699 3.301 24 C -0.196 4.196 25 C -0.156 4.156 26 C -0.148 4.148 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.128 0.872 48 H 0.244 0.756 49 H -0.200 1.200 50 H -0.221 1.221 51 H 0.180 0.820 52 H 0.098 0.902 53 H 0.094 0.906 54 H 0.100 0.900 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.307 0.846 2.695 4.349 hybrid contribution -0.853 -0.267 0.256 0.929 sum 2.454 0.579 2.951 3.881 Atomic orbital electron populations 1.21909 0.95426 1.01738 1.01744 1.21124 0.95640 0.96406 0.97828 1.21894 1.01469 0.95497 1.01737 1.21190 0.95339 0.94781 0.98253 0.90809 1.21571 1.00698 0.95482 0.96985 1.21839 0.95303 0.99721 0.99213 1.20942 0.93570 0.93289 0.87639 0.91797 1.45788 1.67213 1.06213 1.17259 1.17606 0.76114 0.82232 0.86242 1.90732 1.53147 1.67007 1.36149 1.19973 1.17622 0.93037 0.95906 1.20534 0.99096 0.94711 0.86949 1.20432 1.01377 0.91747 0.95563 1.21693 1.01118 0.96896 0.96275 1.21942 1.01081 0.99733 0.94596 1.22308 1.02618 0.77913 0.98623 1.44038 1.48851 1.07410 1.09703 1.20956 1.09471 0.84936 0.96416 1.24990 0.96276 1.04217 0.90091 1.86460 1.35570 1.52068 1.61787 0.93136 0.85136 0.71271 0.80553 1.21918 1.07003 0.98864 0.91863 1.21762 1.01264 0.92694 0.99877 1.21590 0.94913 1.01106 0.97220 0.92641 0.92828 0.92639 0.91734 0.92962 0.92594 0.91880 0.91338 0.92674 0.94127 0.91262 0.75454 0.90699 0.90002 0.90710 0.89414 0.87209 0.91877 0.87760 0.88623 0.87164 0.75587 1.20026 1.22059 0.82022 0.90190 0.90629 0.89970 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 8.84 71.98 0.64 0.68 16 2 C -0.09 0.07 2.51 -10.79 -0.03 0.04 16 3 C -0.15 0.26 8.84 71.98 0.64 0.90 16 4 C -0.08 0.08 1.78 -10.79 -0.02 0.06 16 5 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 6 C -0.11 -0.20 4.85 30.60 0.15 -0.05 16 7 C -0.12 -0.48 5.49 30.60 0.17 -0.32 16 8 C 0.15 0.51 2.45 44.99 0.11 0.62 16 9 H 0.06 0.55 7.58 -2.39 -0.02 0.53 16 10 N -0.71 -2.80 5.07 -445.94 -2.26 -5.06 16 11 C 0.59 5.98 7.77 86.62 0.67 6.66 16 12 O -0.59 -10.05 15.00 -4.14 -0.06 -10.11 16 13 C -0.26 -1.87 6.28 -19.12 -0.12 -1.99 16 14 C 0.11 0.64 6.57 41.69 0.27 0.91 16 15 C -0.05 -0.25 5.32 30.08 0.16 -0.09 16 16 C -0.12 0.22 5.98 30.78 0.18 0.41 16 17 C -0.14 0.54 5.92 30.69 0.18 0.73 16 18 C 0.10 -0.36 5.32 86.33 0.46 0.10 16 19 N -0.42 -0.66 3.11 -493.61 -1.54 -2.20 16 20 C -0.01 -0.01 6.15 40.99 0.25 0.25 16 21 C -0.05 0.13 2.99 71.24 0.21 0.34 16 22 O -0.55 2.25 10.68 -148.98 -1.59 0.66 16 23 Si 0.80 -3.71 31.28 68.60 2.15 -1.56 16 24 C -0.17 -0.35 9.08 23.64 0.21 -0.14 16 25 C -0.12 0.24 5.39 30.59 0.16 0.40 16 26 C -0.11 0.22 4.85 30.59 0.15 0.37 16 27 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.05 0.02 6.43 -2.38 -0.02 0.00 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.06 -0.17 6.43 -2.39 -0.02 -0.18 16 34 H 0.07 0.12 6.43 -2.39 -0.02 0.10 16 35 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.41 -0.46 7.73 -92.71 -0.72 -1.18 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 0.67 7.40 -2.38 -0.02 0.65 16 41 H 0.07 -0.19 8.12 -2.38 -0.02 -0.21 16 42 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.06 -0.09 8.11 -2.38 -0.02 -0.11 16 45 H 0.10 -0.73 7.94 -2.38 -0.02 -0.75 16 46 H 0.10 -0.29 7.69 -2.39 -0.02 -0.31 16 47 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 48 H 0.39 -4.32 8.63 -74.06 -0.64 -4.96 16 49 H -0.27 0.29 6.77 99.48 0.67 0.97 16 50 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 51 H 0.16 -0.35 6.29 -2.91 -0.02 -0.37 16 52 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 53 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 54 H 0.08 -0.31 6.43 -2.39 -0.02 -0.32 16 55 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: 0.00 -16.38 410.70 0.68 -15.70 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -0.48 Total: -7.30 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.46 Total: 9.87 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -3.80 Total: -7.26 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.65 Total: -9.45 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.15 Total: -1.56 kcal Total: -16.38 0.68 -15.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_16915396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.928 kcal (2) G-P(sol) polarization free energy of solvation -16.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds