Wall clock time and date at job start Sun Mar 7 2021 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47150 * 2 1 4 4 C 1.53000 * 109.46927 * 120.00005 * 2 1 3 5 5 H 1.09007 * 109.47309 * 299.99976 * 4 2 1 6 6 C 1.53003 * 109.47186 * 59.99830 * 4 2 1 7 7 C 1.53000 * 109.47186 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47249 * 300.00315 * 7 6 4 9 9 H 1.09007 * 109.46826 * 300.00126 * 8 7 6 10 10 N 1.46503 * 109.47437 * 180.02562 * 8 7 6 11 11 C 1.34775 * 119.99923 * 84.99566 * 10 8 7 12 12 O 1.21276 * 120.00280 * 359.97438 * 11 10 8 13 13 C 1.50706 * 119.99531 * 180.02562 * 11 10 8 14 14 O 1.42895 * 109.46727 * 180.02562 * 13 11 10 15 15 C 1.35901 * 117.00002 * 180.02562 * 14 13 11 16 16 C 1.38709 * 120.05787 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.02762 * 359.95504 * 16 15 14 18 18 O 1.42895 * 109.47387 * 75.00248 * 17 16 15 19 19 Si 1.86305 * 109.46827 * 194.99996 * 17 16 15 20 20 C 1.38171 * 119.94081 * 179.97438 * 16 15 14 21 21 C 1.38240 * 120.06065 * 0.02562 * 20 16 15 22 22 C 1.38295 * 120.10794 * 0.02562 * 21 20 16 23 23 C 1.38120 * 120.05704 * 359.97438 * 22 21 20 24 24 C 1.52994 * 109.47426 * 59.99689 * 8 7 6 25 25 C 1.53000 * 109.47160 * 300.00366 * 24 8 7 26 26 H 1.09001 * 109.47411 * 300.00209 * 1 2 3 27 27 H 1.08998 * 109.47112 * 59.99787 * 1 2 3 28 28 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46990 * 239.99649 * 2 1 3 30 30 H 1.09001 * 109.47356 * 60.00373 * 3 2 1 31 31 H 1.09004 * 109.47381 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47510 * 299.99601 * 3 2 1 33 33 H 1.09000 * 109.47098 * 299.99701 * 6 4 2 34 34 H 1.09001 * 109.46982 * 60.00318 * 6 4 2 35 35 H 1.08999 * 109.47471 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47404 * 59.99689 * 7 6 4 37 37 H 0.97000 * 119.99273 * 265.00079 * 10 8 7 38 38 H 1.09001 * 109.47274 * 59.99532 * 13 11 10 39 39 H 1.09003 * 109.46605 * 299.99484 * 13 11 10 40 40 H 1.08995 * 109.46925 * 314.99539 * 17 16 15 41 41 H 0.96701 * 114.00227 * 180.02562 * 18 17 16 42 42 H 1.48504 * 109.99618 * 178.67522 * 19 17 16 43 43 H 1.48494 * 109.99943 * 299.99497 * 19 17 16 44 44 H 1.08005 * 119.97011 * 180.02562 * 20 16 15 45 45 H 1.07995 * 119.94494 * 180.27435 * 21 20 16 46 46 H 1.07997 * 119.96986 * 179.97438 * 22 21 20 47 47 H 1.08001 * 120.02657 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.46865 * 59.99961 * 24 8 7 49 49 H 1.08991 * 109.47708 * 180.02562 * 24 8 7 50 50 H 1.08999 * 109.47471 * 179.97438 * 25 24 8 51 51 H 1.08995 * 109.47721 * 299.99858 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 6 2.0393 -2.8848 2.4988 8 6 3.5693 -2.8849 2.4996 9 1 3.9331 -3.3988 1.6098 10 7 4.0572 -3.5758 3.6958 11 6 4.1858 -4.9174 3.6936 12 8 3.8973 -5.5527 2.7017 13 6 4.6871 -5.6282 4.9244 14 8 4.7359 -7.0345 4.6755 15 6 5.1691 -7.8262 5.6916 16 6 5.2420 -9.2005 5.5189 17 6 4.8400 -9.8177 4.2042 18 8 5.8606 -9.5775 3.2333 19 14 4.6120 -11.6536 4.4241 20 6 5.6833 -10.0031 6.5534 21 6 6.0513 -9.4377 7.7600 22 6 5.9784 -8.0678 7.9351 23 6 5.5380 -7.2611 6.9041 24 6 4.0794 -1.4424 2.4995 25 6 3.5700 -0.7214 1.2500 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.4399 -2.1637 1.2493 34 1 1.8933 -2.6776 0.3593 35 1 1.6763 -3.9126 2.4987 36 1 1.6757 -2.3708 3.3886 37 1 4.2875 -3.0677 4.4893 38 1 4.0139 -5.4294 5.7583 39 1 5.6862 -5.2682 5.1702 40 1 3.9042 -9.3734 3.8654 41 1 5.6683 -9.9473 2.3607 42 1 4.1844 -12.2694 3.1422 43 1 5.8809 -12.2713 4.8859 44 1 5.7407 -11.0733 6.4193 45 1 6.4001 -10.0664 8.5659 46 1 6.2661 -7.6284 8.8787 47 1 5.4817 -6.1913 7.0412 48 1 3.7156 -0.9284 3.3893 49 1 5.1693 -1.4424 2.4996 50 1 3.9330 0.3064 1.2501 51 1 3.9336 -1.2353 0.3602 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_2989392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:10 Heat of formation + Delta-G solvation = -92.751861 kcal Electronic energy + Delta-G solvation = -29006.195757 eV Core-core repulsion = 25064.686254 eV Total energy + Delta-G solvation = -3941.509502 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67194 -40.97534 -39.78985 -38.47423 -37.64348 -36.69654 -34.24970 -32.89243 -31.93778 -31.36411 -30.28371 -28.47187 -28.02175 -26.66693 -24.27392 -23.50052 -23.24596 -22.47894 -21.59846 -21.16592 -20.60865 -19.33747 -18.61786 -18.37668 -17.48113 -17.38568 -17.05142 -16.81488 -16.31017 -15.75012 -15.55802 -15.46493 -15.29071 -15.15171 -15.04596 -14.79789 -14.56086 -14.41984 -14.21955 -13.95684 -13.82731 -13.59676 -13.40107 -13.10637 -13.07433 -12.81375 -12.68467 -12.64372 -12.32467 -12.13025 -12.11959 -12.05644 -11.83181 -11.79460 -11.64225 -11.34076 -11.23795 -10.99491 -10.85247 -10.45707 -10.15038 -9.97404 -9.22075 -4.98165 0.22476 0.41654 1.26262 1.41383 1.47795 1.55445 1.87420 2.58061 2.66116 3.42656 3.48945 3.63566 3.67913 3.75655 3.79025 3.92734 3.95001 4.00978 4.02971 4.11292 4.15838 4.24526 4.27308 4.30780 4.33716 4.36366 4.48859 4.51742 4.52248 4.63566 4.65571 4.66417 4.78068 4.81827 4.96834 4.99275 5.00434 5.02054 5.07173 5.12536 5.17206 5.18462 5.27388 5.27937 5.33792 5.35956 5.38633 5.46066 5.52263 5.53762 5.61607 5.75478 6.26274 6.44934 6.54418 7.10707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.112 4.112 7 C -0.123 4.123 8 C 0.148 3.852 9 H 0.058 0.942 10 N -0.707 5.707 11 C 0.512 3.488 12 O -0.571 6.571 13 C 0.037 3.963 14 O -0.313 6.313 15 C 0.127 3.873 16 C -0.130 4.130 17 C -0.087 4.087 18 O -0.557 6.557 19 Si 0.781 3.219 20 C -0.089 4.089 21 C -0.155 4.155 22 C -0.074 4.074 23 C -0.212 4.212 24 C -0.117 4.117 25 C -0.113 4.113 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.420 0.580 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.388 0.612 42 H -0.290 1.290 43 H -0.282 1.282 44 H 0.142 0.858 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 5.190 6.882 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.161 4.161 8 C 0.044 3.956 9 H 0.077 0.923 10 N -0.360 5.360 11 C 0.298 3.702 12 O -0.449 6.449 13 C -0.041 4.041 14 O -0.226 6.226 15 C 0.082 3.918 16 C -0.131 4.131 17 C -0.194 4.194 18 O -0.366 6.366 19 Si 0.685 3.315 20 C -0.107 4.107 21 C -0.172 4.172 22 C -0.092 4.092 23 C -0.230 4.230 24 C -0.155 4.155 25 C -0.151 4.151 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.258 0.742 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.237 0.763 42 H -0.218 1.218 43 H -0.209 1.209 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.175 0.825 47 H 0.175 0.825 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.101 0.899 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.874 4.220 6.235 7.580 hybrid contribution 0.481 0.493 -1.248 1.426 sum -0.392 4.713 4.987 6.873 Atomic orbital electron populations 1.21906 0.95329 1.01744 1.01823 1.21128 0.95725 0.96421 0.97846 1.21892 1.01404 0.95491 1.01812 1.21192 0.95189 0.94729 0.98361 0.90288 1.21586 1.00891 0.95528 0.96971 1.21849 0.94828 0.99900 0.99569 1.21000 0.93951 0.93389 0.87307 0.92335 1.45791 1.66891 1.05446 1.17907 1.20534 0.77462 0.83198 0.88971 1.90751 1.50654 1.66981 1.36504 1.22716 1.04950 0.79804 0.96667 1.86157 1.81151 1.17667 1.37581 1.19067 0.95025 0.90182 0.87531 1.18867 1.07266 0.91225 0.95749 1.25056 0.92503 1.13408 0.88411 1.86549 1.45746 1.80332 1.23954 0.94102 0.83290 0.70668 0.83471 1.21155 0.96558 1.00035 0.92947 1.21403 1.02219 0.95966 0.97657 1.21416 0.95225 0.93436 0.99089 1.21603 1.06491 1.02181 0.92716 1.21759 1.01251 0.92345 1.00118 1.21609 0.95073 1.01180 0.97232 0.92381 0.92974 0.92651 0.92072 0.92355 0.91972 0.93088 0.91127 0.93134 0.94076 0.90220 0.74220 0.85673 0.86433 0.91734 0.76321 1.21788 1.20885 0.84085 0.83022 0.82501 0.82519 0.89307 0.90669 0.89883 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 8.84 71.98 0.64 0.85 16 2 C -0.09 0.17 2.51 -10.80 -0.03 0.14 16 3 C -0.15 0.41 8.84 71.98 0.64 1.05 16 4 C -0.08 0.22 1.77 -10.79 -0.02 0.20 16 5 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 6 C -0.11 0.00 4.85 30.60 0.15 0.15 16 7 C -0.12 -0.08 5.49 30.60 0.17 0.08 16 8 C 0.15 0.01 2.45 44.99 0.11 0.12 16 9 H 0.06 0.40 7.58 -2.38 -0.02 0.38 16 10 N -0.71 1.54 5.08 -442.52 -2.25 -0.71 16 11 C 0.51 2.73 7.87 87.66 0.69 3.42 16 12 O -0.57 -9.72 16.16 16.02 0.26 -9.46 16 13 C 0.04 0.00 5.22 71.24 0.37 0.37 16 14 O -0.31 -2.99 9.00 -73.40 -0.66 -3.65 16 15 C 0.13 0.90 6.66 22.51 0.15 1.05 16 16 C -0.13 -1.02 5.30 -19.77 -0.10 -1.13 16 17 C -0.09 -0.70 2.37 71.23 0.17 -0.53 16 18 O -0.56 -6.51 12.86 -148.98 -1.92 -8.42 16 19 Si 0.78 2.01 30.20 68.60 2.07 4.09 16 20 C -0.09 -0.32 8.66 22.25 0.19 -0.13 16 21 C -0.15 0.03 10.04 22.28 0.22 0.26 16 22 C -0.07 0.13 10.04 22.26 0.22 0.35 16 23 C -0.21 -0.04 9.04 22.37 0.20 0.16 16 24 C -0.12 0.60 5.39 30.59 0.16 0.76 16 25 C -0.11 0.42 4.85 30.60 0.15 0.57 16 26 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.05 -0.04 6.43 -2.39 -0.02 -0.06 16 29 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.06 -0.22 6.43 -2.39 -0.02 -0.24 16 32 H 0.05 -0.10 8.14 -2.39 -0.02 -0.11 16 33 H 0.07 -0.01 6.43 -2.39 -0.02 -0.03 16 34 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 37 H 0.42 -4.24 8.60 -92.71 -0.80 -5.04 16 38 H 0.13 -0.88 7.66 -2.39 -0.02 -0.90 16 39 H 0.12 -0.66 7.67 -2.39 -0.02 -0.68 16 40 H 0.06 0.59 7.83 -2.39 -0.02 0.57 16 41 H 0.39 1.68 8.74 -74.06 -0.65 1.03 16 42 H -0.29 -2.04 7.11 99.48 0.71 -1.33 16 43 H -0.28 -1.90 6.75 99.48 0.67 -1.23 16 44 H 0.14 0.13 4.90 -2.91 -0.01 0.12 16 45 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 46 H 0.16 -1.22 8.06 -2.91 -0.02 -1.24 16 47 H 0.16 -1.03 6.30 -2.91 -0.02 -1.05 16 48 H 0.09 -0.75 8.14 -2.39 -0.02 -0.76 16 49 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 50 H 0.08 -0.44 6.43 -2.39 -0.02 -0.45 16 51 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -24.44 396.17 1.08 -23.37 By element: Atomic # 1 Polarization: -12.44 SS G_CDS: -0.51 Total: -12.96 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.08 Total: 7.74 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -2.25 Total: -0.71 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -2.32 Total: -21.53 kcal Atomic # 14 Polarization: 2.01 SS G_CDS: 2.07 Total: 4.09 kcal Total: -24.44 1.08 -23.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_2989392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.387 kcal (2) G-P(sol) polarization free energy of solvation -24.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds