Wall clock time and date at job start Sun Mar 7 2021 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00350 * 2 1 3 5 5 H 1.08998 * 109.46862 * 300.00565 * 4 2 1 6 6 C 1.53006 * 109.47223 * 59.99712 * 4 2 1 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 10 10 N 1.46505 * 109.46958 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99797 * 84.99979 * 10 8 7 12 12 O 1.21278 * 120.00140 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99981 * 179.97438 * 11 10 8 14 14 O 1.42898 * 109.47428 * 180.02562 * 13 11 10 15 15 C 1.35898 * 117.00162 * 179.97438 * 14 13 11 16 16 C 1.38727 * 120.05580 * 359.73341 * 15 14 13 17 17 C 1.38148 * 119.94376 * 179.73826 * 16 15 14 18 18 C 1.38262 * 120.05300 * 0.50971 * 17 16 15 19 19 C 1.50704 * 119.94450 * 179.74070 * 18 17 16 20 20 O 1.42900 * 109.46879 * 120.01787 * 19 18 17 21 21 Si 1.86308 * 109.47022 * 0.02562 * 19 18 17 22 22 C 1.38264 * 120.11425 * 359.76512 * 18 17 16 23 23 C 1.38150 * 120.05477 * 359.97438 * 22 18 17 24 24 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 25 25 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 26 26 H 1.09004 * 109.47261 * 59.99694 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99950 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00325 * 2 1 3 30 30 H 1.09004 * 109.47552 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47298 * 300.00283 * 3 2 1 32 32 H 1.09001 * 109.46993 * 59.99869 * 3 2 1 33 33 H 1.09001 * 109.47002 * 60.00080 * 6 4 2 34 34 H 1.09000 * 109.47050 * 300.00346 * 6 4 2 35 35 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 37 37 H 0.97001 * 119.99745 * 265.00017 * 10 8 7 38 38 H 1.08998 * 109.47252 * 300.00615 * 13 11 10 39 39 H 1.09005 * 109.46927 * 60.00159 * 13 11 10 40 40 H 1.08004 * 120.03173 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.97366 * 180.27031 * 17 16 15 42 42 H 1.09001 * 109.47224 * 240.02226 * 19 18 17 43 43 H 0.96706 * 113.99528 * 180.02562 * 20 19 18 44 44 H 1.48496 * 109.99743 * 59.99785 * 21 19 18 45 45 H 1.48498 * 109.99902 * 181.31805 * 21 19 18 46 46 H 1.08001 * 119.97657 * 179.97438 * 22 18 17 47 47 H 1.08001 * 120.02445 * 179.97438 * 23 22 18 48 48 H 1.09004 * 109.47368 * 179.97438 * 24 8 7 49 49 H 1.09001 * 109.47372 * 59.99964 * 24 8 7 50 50 H 1.09002 * 109.47153 * 59.99783 * 25 4 2 51 51 H 1.09001 * 109.46832 * 299.99974 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -0.2075 2.1391 6 6 1.5300 -2.1638 1.2491 7 6 2.0396 -2.8849 2.4986 8 6 3.5696 -2.8849 2.4990 9 1 3.9332 -3.3988 1.6093 10 7 4.0575 -3.5760 3.6952 11 6 4.1862 -4.9176 3.6930 12 8 3.8985 -5.5527 2.7006 13 6 4.6886 -5.6284 4.9231 14 8 4.7372 -7.0347 4.6743 15 6 5.1724 -7.8263 5.6896 16 6 5.5502 -7.2606 6.8987 17 6 5.9870 -8.0679 7.9311 18 6 6.0578 -9.4376 7.7566 19 6 6.5403 -10.3155 8.8825 20 8 5.5129 -11.2433 9.2369 21 14 6.9585 -9.2584 10.3586 22 6 5.6873 -10.0034 6.5506 23 6 5.2446 -9.2009 5.5169 24 6 4.0795 -1.4425 2.4991 25 6 3.5700 -0.7218 1.2488 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8933 -2.6776 0.3591 34 1 0.4400 -2.1638 1.2491 35 1 1.6766 -3.9127 2.4983 36 1 1.6760 -2.3710 3.3884 37 1 4.2880 -3.0679 4.4887 38 1 5.6878 -5.2684 5.1681 39 1 4.0161 -5.4297 5.7577 40 1 5.4992 -6.1903 7.0340 41 1 6.2771 -7.6284 8.8740 42 1 7.4282 -10.8611 8.5630 43 1 5.7545 -11.8414 9.9574 44 1 5.7560 -8.5094 10.8039 45 1 7.4656 -10.1091 11.4651 46 1 5.7439 -11.0735 6.4166 47 1 4.9557 -9.6432 4.5750 48 1 5.1696 -1.4424 2.4999 49 1 3.7159 -0.9286 3.3890 50 1 3.9337 0.3057 1.2486 51 1 3.9329 -1.2359 0.3587 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_2989410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:14 Heat of formation + Delta-G solvation = -95.226905 kcal Electronic energy + Delta-G solvation = -28253.005693 eV Core-core repulsion = 24311.388865 eV Total energy + Delta-G solvation = -3941.616828 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62555 -40.93220 -39.80971 -38.89677 -37.34322 -36.67330 -34.23032 -32.45930 -31.91289 -31.82485 -30.47499 -28.56885 -28.01055 -26.17879 -24.33280 -23.62704 -23.47750 -22.23441 -21.58922 -21.14993 -20.59796 -19.47768 -18.58932 -18.34627 -17.46522 -17.39028 -17.00142 -16.75665 -16.28643 -15.71492 -15.66046 -15.48661 -15.30479 -15.12944 -14.97549 -14.54942 -14.48387 -14.41483 -14.22116 -14.07679 -13.97857 -13.54835 -13.43345 -13.36873 -13.07396 -12.79666 -12.66927 -12.48601 -12.30414 -12.17582 -12.10224 -12.03778 -11.91054 -11.75484 -11.62611 -11.32539 -11.22295 -10.97564 -10.83506 -10.48069 -10.12701 -10.04228 -9.22162 -4.91666 0.26340 0.30487 1.32552 1.43994 1.48575 1.62224 1.96794 2.58575 2.62022 3.40571 3.50706 3.65541 3.69871 3.76082 3.81944 3.83469 3.97442 4.02534 4.03715 4.06894 4.14028 4.29268 4.29529 4.32486 4.38347 4.41563 4.44707 4.51059 4.54395 4.65356 4.67330 4.68425 4.80047 4.82702 4.96258 5.01126 5.01850 5.03734 5.08984 5.14049 5.15450 5.19250 5.20536 5.24079 5.29128 5.35807 5.37495 5.48059 5.49860 5.55221 5.63192 5.68458 6.26033 6.47872 6.60253 7.13717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.112 4.112 7 C -0.124 4.124 8 C 0.148 3.852 9 H 0.060 0.940 10 N -0.706 5.706 11 C 0.512 3.488 12 O -0.574 6.574 13 C 0.036 3.964 14 O -0.320 6.320 15 C 0.120 3.880 16 C -0.199 4.199 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.086 4.086 20 O -0.561 6.561 21 Si 0.769 3.231 22 C -0.062 4.062 23 C -0.167 4.167 24 C -0.116 4.116 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.421 0.579 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.152 0.848 42 H 0.092 0.908 43 H 0.394 0.606 44 H -0.296 1.296 45 H -0.289 1.289 46 H 0.134 0.866 47 H 0.127 0.873 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 6.901 4.704 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.163 4.163 8 C 0.043 3.957 9 H 0.079 0.921 10 N -0.360 5.360 11 C 0.298 3.702 12 O -0.452 6.452 13 C -0.042 4.042 14 O -0.233 6.233 15 C 0.075 3.925 16 C -0.217 4.217 17 C -0.095 4.095 18 C -0.125 4.125 19 C -0.194 4.194 20 O -0.371 6.371 21 Si 0.674 3.326 22 C -0.080 4.080 23 C -0.186 4.186 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.259 0.741 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.184 0.816 41 H 0.169 0.831 42 H 0.110 0.890 43 H 0.244 0.756 44 H -0.223 1.223 45 H -0.217 1.217 46 H 0.152 0.848 47 H 0.145 0.855 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.101 0.899 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.531 6.878 4.152 8.776 hybrid contribution -0.676 -1.342 0.341 1.540 sum 2.855 5.536 4.492 7.680 Atomic orbital electron populations 1.21908 0.95432 1.01698 1.01782 1.21133 0.95648 0.96464 0.97909 1.21891 1.01455 0.95453 1.01771 1.21186 0.95333 0.94652 0.98289 0.90379 1.21589 1.00813 0.95598 0.97029 1.21860 0.95074 0.99832 0.99516 1.20999 0.93765 0.93486 0.87429 0.92142 1.45789 1.66800 1.05475 1.17911 1.20580 0.77439 0.83196 0.89010 1.90761 1.50817 1.67012 1.36634 1.22765 1.05559 0.79346 0.96495 1.86128 1.81353 1.18158 1.37652 1.19200 0.95063 0.90741 0.87541 1.21482 1.05709 1.02249 0.92288 1.21024 0.96951 0.92334 0.99168 1.19463 1.04142 0.93992 0.94882 1.25044 0.92988 0.96858 1.04497 1.86552 1.42165 1.50312 1.58056 0.94221 0.83007 0.81168 0.74174 1.20917 0.95382 1.00086 0.91585 1.20621 1.05762 0.91113 1.01063 1.21767 1.01387 0.92257 1.00012 1.21618 0.94919 1.01235 0.97331 0.92990 0.92708 0.92444 0.92010 0.91870 0.93131 0.92401 0.93048 0.91309 0.94168 0.90322 0.74112 0.85255 0.85872 0.81559 0.83052 0.88983 0.75586 1.22331 1.21659 0.84790 0.85452 0.90402 0.89390 0.89872 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 8.84 71.98 0.64 0.84 16 2 C -0.09 0.19 2.51 -10.80 -0.03 0.16 16 3 C -0.15 0.45 8.84 71.98 0.64 1.09 16 4 C -0.08 0.24 1.78 -10.79 -0.02 0.22 16 5 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 6 C -0.11 0.02 4.85 30.60 0.15 0.17 16 7 C -0.12 -0.05 5.49 30.59 0.17 0.11 16 8 C 0.15 -0.12 2.45 44.99 0.11 -0.01 16 9 H 0.06 0.34 7.57 -2.39 -0.02 0.32 16 10 N -0.71 2.45 5.08 -442.54 -2.25 0.21 16 11 C 0.51 1.93 7.87 87.66 0.69 2.62 16 12 O -0.57 -9.10 16.16 16.01 0.26 -8.84 16 13 C 0.04 -0.08 5.22 71.23 0.37 0.29 16 14 O -0.32 -2.33 9.67 -73.36 -0.71 -3.04 16 15 C 0.12 0.61 6.69 22.50 0.15 0.76 16 16 C -0.20 0.16 9.04 22.37 0.20 0.36 16 17 C -0.08 0.02 8.66 22.25 0.19 0.22 16 18 C -0.12 -0.36 5.42 -19.85 -0.11 -0.47 16 19 C -0.09 0.03 2.81 71.24 0.20 0.23 16 20 O -0.56 -1.64 12.74 -148.98 -1.90 -3.54 16 21 Si 0.77 -2.23 29.78 68.60 2.04 -0.19 16 22 C -0.06 -0.31 9.60 22.26 0.21 -0.10 16 23 C -0.17 -1.14 9.99 22.37 0.22 -0.91 16 24 C -0.12 0.71 5.39 30.61 0.17 0.88 16 25 C -0.11 0.50 4.85 30.61 0.15 0.65 16 26 H 0.05 -0.05 8.14 -2.38 -0.02 -0.07 16 27 H 0.05 -0.04 6.43 -2.39 -0.02 -0.05 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 31 H 0.05 -0.11 8.14 -2.38 -0.02 -0.12 16 32 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 0.00 6.43 -2.39 -0.02 -0.02 16 35 H 0.04 0.25 8.14 -2.39 -0.02 0.24 16 36 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.42 -4.87 8.60 -92.71 -0.80 -5.67 16 38 H 0.13 -1.22 7.65 -2.39 -0.02 -1.24 16 39 H 0.12 -1.04 7.68 -2.38 -0.02 -1.05 16 40 H 0.17 -1.44 6.30 -2.91 -0.02 -1.46 16 41 H 0.15 -0.83 4.87 -2.91 -0.01 -0.84 16 42 H 0.09 -0.36 7.96 -2.39 -0.02 -0.38 16 43 H 0.39 -2.03 8.74 -74.05 -0.65 -2.68 16 44 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 45 H -0.29 -0.46 7.11 99.48 0.71 0.24 16 46 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 47 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 48 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H 0.08 -0.50 6.43 -2.39 -0.02 -0.51 16 51 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -24.36 396.88 1.07 -23.29 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -0.48 Total: -14.99 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.10 Total: 7.11 kcal Atomic # 7 Polarization: 2.45 SS G_CDS: -2.25 Total: 0.21 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -2.35 Total: -15.42 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: 2.04 Total: -0.19 kcal Total: -24.36 1.07 -23.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_2989410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.936 kcal (2) G-P(sol) polarization free energy of solvation -24.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds