Wall clock time and date at job start Sun Mar 7 2021 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46733 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99494 * 2 1 3 5 5 H 1.09000 * 109.47312 * 300.00337 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00457 * 4 2 1 7 7 C 1.52999 * 109.47592 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46626 * 300.00035 * 7 6 4 9 9 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 10 10 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 11 11 C 1.34775 * 120.00366 * 154.99756 * 10 8 7 12 12 O 1.21282 * 119.99750 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00244 * 180.02562 * 11 10 8 14 14 C 1.53004 * 109.46887 * 180.02562 * 13 11 10 15 15 O 1.42897 * 109.46814 * 179.97438 * 14 13 11 16 16 C 1.35904 * 117.00196 * 179.97438 * 15 14 13 17 17 C 1.38732 * 120.05016 * 359.73038 * 16 15 14 18 18 C 1.38144 * 119.93942 * 179.74204 * 17 16 15 19 19 C 1.38260 * 120.06064 * 0.50960 * 18 17 16 20 20 C 1.50703 * 119.95111 * 179.74349 * 19 18 17 21 21 O 1.42893 * 109.47232 * 245.02444 * 20 19 18 22 22 Si 1.86303 * 109.46554 * 5.02161 * 20 19 18 23 23 C 1.38271 * 120.10879 * 359.76544 * 19 18 17 24 24 C 1.38146 * 120.05253 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47164 * 59.99702 * 8 7 6 26 26 C 1.52996 * 109.46969 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46989 * 60.00699 * 1 2 3 28 28 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.48028 * 299.99942 * 1 2 3 30 30 H 1.09000 * 109.47380 * 239.99789 * 2 1 3 31 31 H 1.09002 * 109.46935 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47061 * 299.98958 * 3 2 1 33 33 H 1.09000 * 109.47360 * 59.99776 * 3 2 1 34 34 H 1.09000 * 109.47140 * 59.99774 * 6 4 2 35 35 H 1.09002 * 109.47045 * 299.99867 * 6 4 2 36 36 H 1.08993 * 109.47839 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47160 * 59.99666 * 7 6 4 38 38 H 0.97001 * 119.99882 * 334.99950 * 10 8 7 39 39 H 1.08996 * 109.46708 * 300.00131 * 13 11 10 40 40 H 1.09001 * 109.46991 * 60.00072 * 13 11 10 41 41 H 1.08999 * 109.46835 * 299.99964 * 14 13 11 42 42 H 1.09000 * 109.46654 * 60.00342 * 14 13 11 43 43 H 1.08004 * 120.02843 * 359.97438 * 17 16 15 44 44 H 1.08003 * 119.97201 * 180.27015 * 18 17 16 45 45 H 1.08995 * 109.47143 * 125.01532 * 20 19 18 46 46 H 0.96695 * 114.00439 * 59.99227 * 21 20 19 47 47 H 1.48495 * 110.00225 * 58.68246 * 22 20 19 48 48 H 1.48504 * 109.99715 * 179.97438 * 22 20 19 49 49 H 1.07999 * 119.97449 * 179.97438 * 23 19 18 50 50 H 1.08004 * 120.02749 * 180.02562 * 24 23 19 51 51 H 1.09000 * 109.47140 * 60.00051 * 25 8 7 52 52 H 1.09001 * 109.47230 * 179.97438 * 25 8 7 53 53 H 1.08992 * 109.47534 * 60.00418 * 26 4 2 54 54 H 1.08996 * 109.47134 * 299.99612 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1636 1.2494 7 6 2.0394 -2.8847 2.4990 8 6 3.5694 -2.8846 2.4996 9 1 3.9332 -3.3986 1.6099 10 7 4.0573 -3.5745 3.6964 11 6 5.2792 -4.1431 3.6956 12 8 5.9752 -4.0832 2.7042 13 6 5.7808 -4.8532 4.9265 14 6 7.1838 -5.4032 4.6619 15 8 7.6596 -6.0761 5.8293 16 6 8.9000 -6.6272 5.7613 17 6 9.6416 -6.5272 4.5931 18 6 10.9044 -7.0836 4.5284 19 6 11.4251 -7.7488 5.6229 20 6 12.8006 -8.3598 5.5476 21 8 12.6972 -9.7809 5.6562 22 14 13.5882 -7.9173 3.9183 23 6 10.6857 -7.8547 6.7865 24 6 9.4245 -7.2953 6.8581 25 6 4.0794 -1.4421 2.4996 26 6 3.5699 -0.7206 1.2497 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.8934 -2.6775 0.3594 35 1 0.4400 -2.1637 1.2493 36 1 1.6765 -3.9125 2.4988 37 1 1.6756 -2.3707 3.3887 38 1 3.5008 -3.6221 4.4895 39 1 5.8168 -4.1526 5.7607 40 1 5.1080 -5.6752 5.1712 41 1 7.1480 -6.1036 3.8275 42 1 7.8562 -4.5808 4.4175 43 1 9.2335 -6.0116 3.7363 44 1 11.4839 -7.0023 3.6206 45 1 13.4136 -7.9766 6.3633 46 1 12.1644 -10.1908 4.9612 47 1 13.6725 -6.4412 3.7791 48 1 14.9456 -8.5134 3.8318 49 1 11.0944 -8.3751 7.6400 50 1 8.8475 -7.3779 7.7673 51 1 3.7156 -0.9282 3.3893 52 1 5.1694 -1.4421 2.5005 53 1 3.9329 0.3071 1.2499 54 1 3.9336 -1.2343 0.3598 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_4549602.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:19 Heat of formation + Delta-G solvation = -105.318799 kcal Electronic energy + Delta-G solvation = -29952.751016 eV Core-core repulsion = 25855.158951 eV Total energy + Delta-G solvation = -4097.592065 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.213 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47409 -41.07432 -39.83252 -39.12722 -37.19202 -36.70312 -34.23947 -33.24606 -32.05191 -31.91240 -31.45380 -29.45256 -28.01557 -26.59983 -25.63279 -24.01352 -23.47431 -23.19284 -22.19870 -21.46171 -21.05248 -20.58648 -19.51090 -18.33505 -17.75843 -17.54859 -17.46761 -16.94769 -16.46592 -16.33665 -16.01599 -15.86311 -15.60633 -15.32961 -15.16924 -14.83860 -14.70796 -14.63808 -14.49618 -14.34061 -14.26892 -14.22729 -13.92771 -13.57552 -13.37846 -13.08568 -12.92526 -12.88041 -12.71211 -12.64112 -12.29040 -12.21925 -12.09930 -12.05106 -12.03949 -11.79297 -11.72496 -11.62670 -11.33018 -11.24744 -10.97052 -10.83769 -10.42223 -10.07551 -10.05643 -9.23184 -5.02077 0.26849 0.29014 1.31261 1.53214 1.61489 1.70864 1.94081 2.49201 2.64487 3.53506 3.56346 3.64979 3.68692 3.71652 3.77032 3.82364 3.89335 3.90246 4.02329 4.02773 4.12987 4.24868 4.29875 4.32919 4.33092 4.38320 4.42780 4.49136 4.52647 4.54669 4.64235 4.66347 4.66536 4.68899 4.76723 4.80614 4.82271 4.96205 5.01466 5.01739 5.04332 5.09005 5.14371 5.16503 5.19121 5.20490 5.27258 5.28993 5.37101 5.37931 5.48131 5.51278 5.54946 5.62895 5.70619 6.30773 6.48511 6.77765 7.17610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.118 4.118 8 C 0.147 3.853 9 H 0.064 0.936 10 N -0.713 5.713 11 C 0.519 3.481 12 O -0.583 6.583 13 C -0.133 4.133 14 C 0.073 3.927 15 O -0.321 6.321 16 C 0.123 3.877 17 C -0.210 4.210 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.065 4.065 21 O -0.556 6.556 22 Si 0.768 3.232 23 C -0.060 4.060 24 C -0.159 4.159 25 C -0.123 4.123 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.107 0.893 46 H 0.395 0.605 47 H -0.290 1.290 48 H -0.297 1.297 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.074 0.926 52 H 0.044 0.956 53 H 0.068 0.932 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 0.732 0.328 6.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.042 3.958 9 H 0.082 0.918 10 N -0.365 5.365 11 C 0.306 3.694 12 O -0.463 6.463 13 C -0.172 4.172 14 C -0.002 4.002 15 O -0.235 6.235 16 C 0.077 3.923 17 C -0.228 4.228 18 C -0.096 4.096 19 C -0.163 4.163 20 C -0.176 4.176 21 O -0.364 6.364 22 Si 0.674 3.326 23 C -0.078 4.078 24 C -0.177 4.177 25 C -0.162 4.162 26 C -0.150 4.150 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.255 0.745 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.124 0.876 46 H 0.245 0.755 47 H -0.217 1.217 48 H -0.225 1.225 49 H 0.157 0.843 50 H 0.160 0.840 51 H 0.092 0.908 52 H 0.062 0.938 53 H 0.087 0.913 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.329 1.280 -0.098 5.481 hybrid contribution 0.018 0.366 0.601 0.704 sum -5.311 1.647 0.503 5.583 Atomic orbital electron populations 1.21894 0.94867 1.02127 1.01735 1.21134 0.96010 0.96035 0.97924 1.21908 1.01100 0.96061 1.01742 1.21184 0.94318 0.95817 0.98197 0.90667 1.21600 1.01349 0.94747 0.97347 1.21761 0.92116 1.01865 0.99871 1.20975 0.94961 0.92122 0.87742 0.91808 1.45976 1.17257 1.55668 1.17571 1.20652 0.81573 0.78091 0.89096 1.90734 1.57278 1.61437 1.36891 1.21440 0.95928 1.02935 0.96910 1.22450 0.95276 0.96338 0.86160 1.85957 1.29574 1.68544 1.39432 1.19189 0.84513 0.93916 0.94655 1.21425 0.96720 1.06332 0.98352 1.20987 0.94783 0.95834 0.97947 1.20331 0.98021 1.02871 0.95078 1.25035 0.96458 0.84064 1.12008 1.86457 1.75671 1.17557 1.56677 0.93817 0.79462 0.78341 0.80939 1.20985 0.92696 0.96296 0.97820 1.20668 0.96996 1.01702 0.98347 1.21857 0.99743 0.95305 0.99288 1.21590 0.95796 1.00441 0.97141 0.93083 0.91925 0.92526 0.91856 0.92586 0.92963 0.92568 0.92390 0.90125 0.90644 0.89851 0.74514 0.85714 0.85455 0.91406 0.91859 0.84225 0.83716 0.87557 0.75542 1.21715 1.22547 0.84272 0.84036 0.90779 0.93763 0.91317 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 8.84 71.98 0.64 1.10 16 2 C -0.09 0.22 2.51 -10.79 -0.03 0.20 16 3 C -0.15 0.28 8.84 71.98 0.64 0.91 16 4 C -0.08 0.27 1.77 -10.80 -0.02 0.25 16 5 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.11 0.51 4.85 30.59 0.15 0.66 16 7 C -0.12 0.69 5.39 30.60 0.16 0.86 16 8 C 0.15 -0.24 2.46 44.99 0.11 -0.13 16 9 H 0.06 0.25 7.58 -2.39 -0.02 0.23 16 10 N -0.71 2.81 5.08 -442.53 -2.25 0.56 16 11 C 0.52 0.44 7.79 87.66 0.68 1.12 16 12 O -0.58 -5.81 15.65 -3.04 -0.05 -5.85 16 13 C -0.13 0.56 6.07 29.85 0.18 0.74 16 14 C 0.07 0.07 4.03 71.98 0.29 0.36 16 15 O -0.32 -1.11 10.14 -92.47 -0.94 -2.05 16 16 C 0.12 0.55 6.69 22.50 0.15 0.70 16 17 C -0.21 -0.64 9.04 22.37 0.20 -0.44 16 18 C -0.08 -0.11 8.66 22.25 0.19 0.09 16 19 C -0.16 -0.32 5.35 -19.85 -0.11 -0.43 16 20 C -0.07 -0.06 2.80 71.24 0.20 0.14 16 21 O -0.56 -0.76 12.83 -148.98 -1.91 -2.67 16 22 Si 0.77 -0.29 29.80 68.60 2.04 1.76 16 23 C -0.06 -0.16 9.68 22.26 0.22 0.06 16 24 C -0.16 -0.53 9.99 22.36 0.22 -0.30 16 25 C -0.12 0.07 5.49 30.61 0.17 0.24 16 26 C -0.11 0.13 4.86 30.61 0.15 0.28 16 27 H 0.05 -0.12 8.14 -2.39 -0.02 -0.13 16 28 H 0.06 -0.25 6.43 -2.39 -0.02 -0.26 16 29 H 0.06 -0.19 8.14 -2.39 -0.02 -0.20 16 30 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 -0.08 6.43 -2.39 -0.02 -0.09 16 32 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 -0.12 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.08 -0.46 6.43 -2.39 -0.02 -0.48 16 36 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.42 -4.29 8.60 -92.71 -0.80 -5.09 16 39 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H 0.07 0.13 7.61 -2.39 -0.02 0.11 16 42 H 0.06 0.16 7.63 -2.39 -0.02 0.14 16 43 H 0.14 0.19 6.30 -2.91 -0.02 0.17 16 44 H 0.15 -0.42 4.90 -2.91 -0.01 -0.43 16 45 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 46 H 0.39 -2.56 8.70 -74.06 -0.64 -3.21 16 47 H -0.29 -1.42 7.11 99.48 0.71 -0.71 16 48 H -0.30 -2.02 7.11 99.48 0.71 -1.31 16 49 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 50 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 51 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 53 H 0.07 -0.07 6.43 -2.39 -0.02 -0.08 16 54 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -17.46 417.91 0.59 -16.88 By element: Atomic # 1 Polarization: -14.49 SS G_CDS: -0.51 Total: -15.00 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 4.20 Total: 6.38 kcal Atomic # 7 Polarization: 2.81 SS G_CDS: -2.25 Total: 0.56 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -2.90 Total: -10.57 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.04 Total: 1.76 kcal Total: -17.46 0.59 -16.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_4549602.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.441 kcal (2) G-P(sol) polarization free energy of solvation -17.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds