Wall clock time and date at job start Sun Mar 7 2021 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47518 * 2 1 4 4 C 1.53001 * 109.47486 * 120.00176 * 2 1 3 5 5 H 1.09001 * 109.46652 * 299.99782 * 4 2 1 6 6 C 1.53000 * 109.46886 * 59.99437 * 4 2 1 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47127 * 300.00449 * 7 6 4 9 9 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 10 10 N 1.46504 * 109.46883 * 180.02562 * 8 7 6 11 11 C 1.34773 * 120.00111 * 84.99828 * 10 8 7 12 12 O 1.21277 * 120.00090 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99819 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.46863 * 179.97438 * 13 11 10 15 15 O 1.42903 * 109.46788 * 180.02562 * 14 13 11 16 16 C 1.35903 * 116.99589 * 179.97438 * 15 14 13 17 17 C 1.38714 * 120.05186 * 179.72776 * 16 15 14 18 18 C 1.38166 * 119.94288 * 179.76747 * 17 16 15 19 19 C 1.50701 * 119.97294 * 180.23393 * 18 17 16 20 20 O 1.42905 * 109.46616 * 300.25346 * 19 18 17 21 21 Si 1.86297 * 109.46957 * 180.25509 * 19 18 17 22 22 C 1.38246 * 120.05341 * 0.48736 * 18 17 16 23 23 C 1.38286 * 120.11447 * 359.76944 * 22 18 17 24 24 C 1.38129 * 120.05413 * 359.97438 * 23 22 18 25 25 C 1.52997 * 109.47164 * 59.99836 * 8 7 6 26 26 C 1.52996 * 109.47302 * 179.97438 * 4 2 1 27 27 H 1.08996 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47054 * 59.99987 * 1 2 3 30 30 H 1.09001 * 109.46993 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47583 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46724 * 300.00525 * 3 2 1 33 33 H 1.08992 * 109.47098 * 59.99702 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 6 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 6 4 2 36 36 H 1.08998 * 109.47533 * 59.99948 * 7 6 4 37 37 H 1.08996 * 109.47853 * 180.02562 * 7 6 4 38 38 H 0.97003 * 119.99624 * 264.99510 * 10 8 7 39 39 H 1.08993 * 109.47165 * 300.00717 * 13 11 10 40 40 H 1.09002 * 109.46786 * 60.00194 * 13 11 10 41 41 H 1.09001 * 109.47269 * 300.00596 * 14 13 11 42 42 H 1.09002 * 109.47224 * 60.00507 * 14 13 11 43 43 H 1.08002 * 120.02607 * 0.02562 * 17 16 15 44 44 H 1.08993 * 109.46951 * 60.25171 * 19 18 17 45 45 H 0.96700 * 114.00103 * 299.99557 * 20 19 18 46 46 H 1.48508 * 110.00031 * 58.67968 * 21 19 18 47 47 H 1.48500 * 110.00040 * 179.97438 * 21 19 18 48 48 H 1.07998 * 119.94561 * 179.74167 * 22 18 17 49 49 H 1.07998 * 119.97550 * 179.97438 * 23 22 18 50 50 H 1.07996 * 120.02968 * 180.02562 * 24 23 22 51 51 H 1.09002 * 109.47045 * 180.02562 * 25 8 7 52 52 H 1.09001 * 109.47375 * 59.99966 * 25 8 7 53 53 H 1.08992 * 109.47554 * 299.99692 * 26 4 2 54 54 H 1.09004 * 109.47108 * 59.99942 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 2.0395 -2.8849 2.4987 8 6 3.5696 -2.8849 2.4992 9 1 3.9332 -3.3988 1.6095 10 7 4.0574 -3.5759 3.6954 11 6 4.1861 -4.9175 3.6932 12 8 3.8984 -5.5526 2.7009 13 6 4.6885 -5.6282 4.9235 14 6 4.7392 -7.1341 4.6575 15 8 5.2151 -7.8081 5.8243 16 6 5.3201 -9.1613 5.7554 17 6 5.7805 -9.8789 6.8495 18 6 5.8818 -11.2551 6.7786 19 6 6.3770 -12.0359 7.9686 20 8 7.6970 -11.6045 8.3055 21 14 6.4042 -13.8515 7.5524 22 6 5.5343 -11.9158 5.6150 23 6 5.0800 -11.2022 4.5211 24 6 4.9720 -9.8268 4.5887 25 6 4.0796 -1.4424 2.4992 26 6 3.5700 -0.7218 1.2488 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.4399 -2.1637 1.2492 35 1 1.8933 -2.6776 0.3592 36 1 1.6759 -2.3709 3.3885 37 1 1.6765 -3.9126 2.4986 38 1 4.2878 -3.0678 4.4889 39 1 5.6876 -5.2682 5.1686 40 1 4.0159 -5.4295 5.7580 41 1 3.7398 -7.4937 4.4127 42 1 5.4116 -7.3332 3.8230 43 1 6.0556 -9.3628 7.7574 44 1 5.7123 -11.8672 8.8159 45 1 8.3432 -11.7251 7.5962 46 1 7.2821 -14.0904 6.3786 47 1 6.8912 -14.6325 8.7177 48 1 5.6181 -12.9911 5.5601 49 1 4.8096 -11.7206 3.6131 50 1 4.6168 -9.2699 3.7343 51 1 5.1696 -1.4424 2.4992 52 1 3.7159 -0.9284 3.3890 53 1 3.9330 -1.2359 0.3589 54 1 3.9337 0.3058 1.2486 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_4549614.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:07:23 Heat of formation + Delta-G solvation = -104.747285 kcal Electronic energy + Delta-G solvation = -29976.335731 eV Core-core repulsion = 25878.768449 eV Total energy + Delta-G solvation = -4097.567282 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.213 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49194 -41.09310 -39.84770 -39.13981 -37.40617 -36.72009 -34.25610 -33.19452 -32.49355 -31.92049 -30.92832 -29.40982 -28.01890 -27.04633 -25.55165 -23.72264 -23.62088 -23.47832 -22.06191 -21.46723 -21.05765 -20.59294 -19.38854 -18.22824 -17.76505 -17.51930 -17.49754 -17.12727 -16.81997 -16.37845 -16.21480 -15.94485 -15.57626 -15.31492 -15.17718 -14.96961 -14.77972 -14.64289 -14.49645 -14.31019 -14.24139 -14.13738 -13.93441 -13.38758 -13.25103 -13.09024 -12.95705 -12.89596 -12.76477 -12.65551 -12.41278 -12.29903 -12.10687 -12.04808 -12.00559 -11.83860 -11.63357 -11.59059 -11.33734 -11.26354 -10.98075 -10.85461 -10.68773 -10.09097 -9.95168 -9.29348 -4.90482 0.17930 0.37516 1.29349 1.50746 1.62162 1.69525 1.96507 2.47811 2.64303 3.39830 3.52933 3.61951 3.65055 3.68594 3.75653 3.83765 3.86332 3.97249 4.02093 4.07715 4.12072 4.22081 4.26303 4.28968 4.32275 4.37604 4.37995 4.51287 4.53623 4.54638 4.61473 4.64350 4.65355 4.67368 4.74257 4.79708 4.81973 4.96611 5.00723 5.01335 5.03616 5.08288 5.13735 5.18371 5.19662 5.24323 5.28304 5.36201 5.36574 5.37151 5.42118 5.49879 5.54421 5.62318 5.68568 6.30819 6.46359 6.46381 7.15268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.123 4.123 8 C 0.146 3.854 9 H 0.063 0.937 10 N -0.713 5.713 11 C 0.519 3.481 12 O -0.583 6.583 13 C -0.133 4.133 14 C 0.075 3.925 15 O -0.324 6.324 16 C 0.116 3.884 17 C -0.141 4.141 18 C -0.082 4.082 19 C -0.087 4.087 20 O -0.548 6.548 21 Si 0.776 3.224 22 C -0.156 4.156 23 C -0.075 4.075 24 C -0.211 4.211 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.386 0.614 46 H -0.282 1.282 47 H -0.302 1.302 48 H 0.149 0.851 49 H 0.153 0.847 50 H 0.135 0.865 51 H 0.074 0.926 52 H 0.083 0.917 53 H 0.057 0.943 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 3.404 0.088 3.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.094 0.906 6 C -0.149 4.149 7 C -0.162 4.162 8 C 0.042 3.958 9 H 0.081 0.919 10 N -0.364 5.364 11 C 0.307 3.693 12 O -0.464 6.464 13 C -0.172 4.172 14 C 0.000 4.000 15 O -0.238 6.238 16 C 0.071 3.929 17 C -0.159 4.159 18 C -0.082 4.082 19 C -0.195 4.195 20 O -0.356 6.356 21 Si 0.680 3.320 22 C -0.174 4.174 23 C -0.093 4.093 24 C -0.230 4.230 25 C -0.156 4.156 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.255 0.745 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.235 0.765 46 H -0.208 1.208 47 H -0.230 1.230 48 H 0.166 0.834 49 H 0.170 0.830 50 H 0.153 0.847 51 H 0.093 0.907 52 H 0.102 0.898 53 H 0.076 0.924 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.778 2.562 0.016 3.119 hybrid contribution 1.009 0.789 -0.239 1.303 sum -0.770 3.351 -0.223 3.445 Atomic orbital electron populations 1.21906 0.95361 1.01778 1.01760 1.21129 0.95691 0.96361 0.97890 1.21896 1.01407 0.95582 1.01753 1.21190 0.95231 0.94881 0.98242 0.90614 1.21582 1.00833 0.95421 0.97105 1.21848 0.94985 0.99999 0.99341 1.20987 0.93838 0.93318 0.87694 0.91875 1.45976 1.66553 1.06309 1.17602 1.20626 0.76750 0.82925 0.89044 1.90731 1.51957 1.66884 1.36799 1.21442 1.06280 0.92501 0.97023 1.22425 0.99734 0.91844 0.86031 1.85954 1.81590 1.16819 1.39479 1.19154 0.96567 0.82439 0.94753 1.20318 1.04154 0.93469 0.98000 1.20177 0.98792 0.93214 0.96035 1.25351 0.85414 1.09821 0.98892 1.86570 1.18883 1.85664 1.44506 0.93906 0.89807 0.71914 0.76340 1.21173 1.02752 1.00558 0.92895 1.21246 0.95890 0.92921 0.99261 1.21550 1.06956 0.96585 0.97911 1.21771 1.01200 0.92742 0.99913 1.21608 0.95024 1.01112 0.97284 0.92555 0.92537 0.92960 0.91889 0.91966 0.93068 0.92506 0.91232 0.92838 0.90713 0.93716 0.74513 0.85675 0.85603 0.91654 0.91829 0.85415 0.85627 0.76456 1.20822 1.22996 0.83419 0.82964 0.84683 0.90735 0.89801 0.92428 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 8.84 71.98 0.64 0.90 16 2 C -0.09 0.21 2.51 -10.79 -0.03 0.18 16 3 C -0.15 0.44 8.84 71.98 0.64 1.07 16 4 C -0.08 0.25 1.78 -10.79 -0.02 0.23 16 5 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 6 C -0.11 0.10 4.85 30.59 0.15 0.25 16 7 C -0.12 0.04 5.49 30.60 0.17 0.20 16 8 C 0.15 -0.16 2.45 44.99 0.11 -0.05 16 9 H 0.06 0.29 7.58 -2.39 -0.02 0.27 16 10 N -0.71 2.31 5.08 -442.52 -2.25 0.06 16 11 C 0.52 0.89 7.79 87.66 0.68 1.57 16 12 O -0.58 -6.30 15.64 -3.02 -0.05 -6.35 16 13 C -0.13 0.40 6.07 29.85 0.18 0.58 16 14 C 0.08 0.17 4.03 71.98 0.29 0.46 16 15 O -0.32 -1.70 10.14 -92.45 -0.94 -2.64 16 16 C 0.12 0.68 6.69 22.51 0.15 0.83 16 17 C -0.14 -0.75 9.55 22.37 0.21 -0.54 16 18 C -0.08 -0.19 5.39 -19.88 -0.11 -0.29 16 19 C -0.09 -0.06 2.82 71.24 0.20 0.14 16 20 O -0.55 -2.17 12.76 -148.98 -1.90 -4.07 16 21 Si 0.78 -1.23 29.79 68.60 2.04 0.82 16 22 C -0.16 -0.02 8.67 22.28 0.19 0.17 16 23 C -0.08 -0.05 10.04 22.26 0.22 0.17 16 24 C -0.21 -0.78 9.04 22.37 0.20 -0.58 16 25 C -0.12 0.63 5.40 30.61 0.17 0.80 16 26 C -0.11 0.46 4.85 30.61 0.15 0.61 16 27 H 0.06 -0.08 6.43 -2.39 -0.02 -0.09 16 28 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 -0.23 6.43 -2.39 -0.02 -0.25 16 32 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.07 -0.06 6.43 -2.39 -0.02 -0.08 16 35 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.42 -3.99 8.60 -92.71 -0.80 -4.79 16 39 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.07 0.22 7.62 -2.39 -0.02 0.21 16 42 H 0.06 0.23 7.62 -2.39 -0.02 0.21 16 43 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 44 H 0.13 -0.10 7.96 -2.39 -0.02 -0.12 16 45 H 0.39 -0.62 8.70 -74.06 -0.64 -1.27 16 46 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 47 H -0.30 -1.79 7.11 99.48 0.71 -1.09 16 48 H 0.15 -0.65 4.87 -2.91 -0.01 -0.67 16 49 H 0.15 -0.64 8.06 -2.91 -0.02 -0.67 16 50 H 0.14 0.33 6.30 -2.91 -0.02 0.31 16 51 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 52 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 53 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 54 H 0.08 -0.43 6.43 -2.38 -0.02 -0.45 16 Total: 0.00 -17.47 417.79 0.59 -16.87 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.51 Total: -11.42 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.20 Total: 6.72 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -2.25 Total: 0.06 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -2.89 Total: -13.05 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.04 Total: 0.82 kcal Total: -17.47 0.59 -16.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_4549614.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.875 kcal (2) G-P(sol) polarization free energy of solvation -17.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds