Wall clock time and date at job start Sun Mar 7 2021 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47131 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47232 * 300.00126 * 7 6 4 9 9 H 1.09001 * 109.47375 * 299.99867 * 8 7 6 10 10 N 1.46507 * 109.47235 * 180.02562 * 8 7 6 11 11 C 1.34774 * 119.99955 * 84.99733 * 10 8 7 12 12 O 1.21273 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99735 * 180.02562 * 11 10 8 14 14 O 1.42894 * 109.46917 * 180.02562 * 13 11 10 15 15 C 1.35900 * 116.99769 * 179.97438 * 14 13 11 16 16 C 1.38716 * 120.05427 * 179.97438 * 15 14 13 17 17 C 1.38164 * 119.94078 * 180.02562 * 16 15 14 18 18 C 1.50705 * 119.96904 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47167 * 65.00112 * 18 17 16 20 20 Si 1.86303 * 109.47036 * 185.00018 * 18 17 16 21 21 C 1.38244 * 120.06113 * 0.02562 * 17 16 15 22 22 C 1.38285 * 120.10875 * 359.97438 * 21 17 16 23 23 C 1.38130 * 120.05667 * 359.76569 * 22 21 17 24 24 C 1.52996 * 109.46975 * 60.00237 * 8 7 6 25 25 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09000 * 109.47380 * 300.00763 * 6 4 2 34 34 H 1.09001 * 109.46997 * 60.00426 * 6 4 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47076 * 60.00779 * 7 6 4 37 37 H 0.97003 * 119.99391 * 265.00486 * 10 8 7 38 38 H 1.09007 * 109.46994 * 300.00084 * 13 11 10 39 39 H 1.08994 * 109.46915 * 59.99909 * 13 11 10 40 40 H 1.07998 * 120.02812 * 0.02995 * 16 15 14 41 41 H 1.08997 * 109.47474 * 304.99784 * 18 17 16 42 42 H 0.96702 * 114.00104 * 59.99965 * 19 18 17 43 43 H 1.48502 * 109.99733 * 180.02562 * 20 18 17 44 44 H 1.48500 * 110.00121 * 301.31850 * 20 18 17 45 45 H 1.08002 * 119.94822 * 180.02562 * 21 17 16 46 46 H 1.07998 * 119.97401 * 180.02562 * 22 21 17 47 47 H 1.07998 * 120.02624 * 180.27289 * 23 22 21 48 48 H 1.09004 * 109.47108 * 179.97438 * 24 8 7 49 49 H 1.09001 * 109.47367 * 60.00185 * 24 8 7 50 50 H 1.08998 * 109.47624 * 300.00318 * 25 4 2 51 51 H 1.09002 * 109.47045 * 59.99942 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7207 -1.2495 7 6 4.0800 -1.4414 -2.4990 8 6 3.5705 -2.8841 -2.4994 9 1 3.9342 -3.3981 -1.6096 10 7 4.0594 -3.5744 -3.6956 11 6 5.2816 -4.1425 -3.6936 12 8 5.9764 -4.0826 -2.7015 13 6 5.7846 -4.8520 -4.9243 14 8 7.0944 -5.3663 -4.6756 15 6 7.6960 -6.0395 -5.6914 16 6 8.9681 -6.5651 -5.5191 17 6 9.5778 -7.2486 -6.5535 18 6 10.9601 -7.8194 -6.3673 19 8 10.9222 -8.8438 -5.3717 20 14 11.5563 -8.5406 -7.9782 21 6 8.9214 -7.4084 -7.7597 22 6 7.6532 -6.8854 -7.9339 23 6 7.0371 -6.2059 -6.9011 24 6 2.0406 -2.8846 -2.4991 25 6 1.5301 -2.1637 -1.2492 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9330 0.3071 -1.2496 34 1 3.9337 -1.2343 -0.3595 35 1 5.1700 -1.4414 -2.4990 36 1 3.7164 -0.9274 -3.3888 37 1 3.5034 -3.6224 -4.4890 38 1 5.1124 -5.6743 -5.1699 39 1 5.8213 -4.1512 -5.7582 40 1 9.4815 -6.4402 -4.5772 41 1 11.6398 -7.0288 -6.0495 42 1 10.3357 -9.5815 -5.5885 43 1 12.9183 -9.1074 -7.8076 44 1 10.6208 -9.5980 -8.4385 45 1 9.3995 -7.9434 -8.5669 46 1 7.1422 -7.0119 -8.8769 47 1 6.0449 -5.8014 -7.0362 48 1 1.6776 -3.9124 -2.4998 49 1 1.6769 -2.3707 -3.3889 50 1 1.8933 -2.6776 -0.3592 51 1 0.4400 -2.1637 -1.2492 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589126_4860298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:12 Heat of formation + Delta-G solvation = -99.026817 kcal Electronic energy + Delta-G solvation = -28360.102032 eV Core-core repulsion = 24418.320427 eV Total energy + Delta-G solvation = -3941.781605 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60479 -40.95079 -39.83295 -38.88935 -37.31510 -36.65281 -34.22385 -32.51498 -31.99836 -31.74731 -30.24241 -28.48993 -28.09791 -26.78508 -24.09375 -23.70388 -23.55563 -22.47907 -21.52099 -21.18401 -20.67257 -19.34656 -18.53070 -17.87312 -17.45947 -17.30080 -17.10341 -16.86897 -16.31259 -16.14973 -15.61083 -15.44208 -15.34504 -15.18535 -14.98766 -14.75488 -14.55677 -14.45979 -14.25830 -14.11494 -13.91887 -13.54058 -13.44015 -13.16024 -13.00904 -12.85710 -12.73153 -12.57790 -12.36016 -12.18154 -12.15858 -12.12347 -11.98187 -11.69727 -11.57450 -11.40395 -11.23408 -11.02474 -10.78462 -10.62100 -10.11457 -9.96280 -9.28253 -4.95194 0.18177 0.38855 1.25377 1.46571 1.50277 1.60081 1.96861 2.54795 2.64449 3.38672 3.43616 3.58463 3.60235 3.62106 3.69966 3.77529 3.86255 3.87491 3.93676 3.99799 4.05421 4.17662 4.22103 4.24661 4.31339 4.34764 4.43161 4.46513 4.53112 4.56434 4.59927 4.63864 4.72253 4.74109 4.89812 4.94068 4.95113 4.95908 5.01242 5.06592 5.10654 5.13207 5.20649 5.22000 5.29746 5.30857 5.33473 5.41140 5.42892 5.47173 5.54700 5.63589 6.24308 6.39110 6.41786 7.10971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.071 0.929 6 C -0.114 4.114 7 C -0.129 4.129 8 C 0.147 3.853 9 H 0.090 0.910 10 N -0.725 5.725 11 C 0.516 3.484 12 O -0.511 6.511 13 C 0.040 3.960 14 O -0.288 6.288 15 C 0.129 3.871 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.078 4.078 19 O -0.527 6.527 20 Si 0.692 3.308 21 C -0.155 4.155 22 C -0.073 4.073 23 C -0.206 4.206 24 C -0.126 4.126 25 C -0.113 4.113 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.376 0.624 43 H -0.257 1.257 44 H -0.260 1.260 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 2.090 -5.317 7.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.152 4.152 7 C -0.168 4.168 8 C 0.043 3.957 9 H 0.108 0.892 10 N -0.378 5.378 11 C 0.300 3.700 12 O -0.384 6.384 13 C -0.039 4.039 14 O -0.200 6.200 15 C 0.084 3.916 16 C -0.139 4.139 17 C -0.078 4.078 18 C -0.187 4.187 19 O -0.333 6.333 20 Si 0.593 3.407 21 C -0.173 4.173 22 C -0.091 4.091 23 C -0.225 4.225 24 C -0.164 4.164 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.235 0.765 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.224 0.776 43 H -0.182 1.182 44 H -0.185 1.185 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.987 1.844 -4.503 6.291 hybrid contribution -1.167 -0.712 0.090 1.370 sum -5.155 1.132 -4.414 6.880 Atomic orbital electron populations 1.21909 0.95224 1.01832 1.01804 1.21146 0.95743 0.96248 0.98008 1.21908 1.01256 0.95874 1.01774 1.21251 0.95190 0.95455 0.98291 0.91054 1.21617 0.95029 1.00800 0.97770 1.21924 1.01352 0.94725 0.98794 1.21066 0.93822 0.92724 0.88066 0.89207 1.45931 1.17295 1.57164 1.17445 1.20026 0.81860 0.79098 0.89004 1.90786 1.55530 1.57874 1.34257 1.22477 0.84814 0.99331 0.97234 1.86177 1.29205 1.68051 1.36597 1.19052 0.92729 0.92902 0.86955 1.20285 0.93004 1.00145 1.00463 1.20089 0.96536 0.97702 0.93491 1.25109 0.96058 0.94133 1.03425 1.86626 1.69202 1.33149 1.44363 0.94882 0.79731 0.86254 0.79824 1.20991 0.95986 1.03267 0.97069 1.20904 0.94408 0.95383 0.98390 1.21302 1.01508 1.05875 0.93766 1.21820 0.93585 1.01385 0.99581 1.21615 1.00923 0.95201 0.97377 0.92725 0.92396 0.92746 0.91184 0.92335 0.92731 0.92747 0.91147 0.91627 0.91349 0.91721 0.76495 0.88851 0.88758 0.84632 0.86170 0.77623 1.18204 1.18528 0.85300 0.85111 0.85254 0.91196 0.91257 0.91537 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 8.84 37.16 0.33 0.52 16 2 C -0.09 0.10 2.51 -90.62 -0.23 -0.12 16 3 C -0.15 0.14 8.84 37.16 0.33 0.47 16 4 C -0.08 0.13 1.77 -90.62 -0.16 -0.03 16 5 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 6 C -0.11 0.08 4.85 -26.73 -0.13 -0.05 16 7 C -0.13 0.04 5.49 -26.73 -0.15 -0.11 16 8 C 0.15 -0.09 2.45 -67.93 -0.17 -0.26 16 9 H 0.09 0.16 7.58 -51.93 -0.39 -0.23 16 10 N -0.73 1.06 5.08 -53.81 -0.27 0.78 16 11 C 0.52 0.85 7.87 -10.98 -0.09 0.77 16 12 O -0.51 -3.44 16.16 -14.35 -0.23 -3.67 16 13 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 14 O -0.29 -0.95 9.67 -39.34 -0.38 -1.33 16 15 C 0.13 0.28 6.69 -39.21 -0.26 0.01 16 16 C -0.12 -0.30 9.62 -39.43 -0.38 -0.68 16 17 C -0.08 -0.07 5.35 -104.64 -0.56 -0.63 16 18 C -0.08 -0.03 2.80 36.01 0.10 0.07 16 19 O -0.53 -1.08 12.83 -35.23 -0.45 -1.53 16 20 Si 0.69 -0.55 29.88 -169.99 -5.08 -5.63 16 21 C -0.16 0.04 8.67 -39.56 -0.34 -0.30 16 22 C -0.07 0.06 10.04 -39.60 -0.40 -0.34 16 23 C -0.21 0.05 9.04 -39.43 -0.36 -0.31 16 24 C -0.13 0.30 5.39 -26.70 -0.14 0.16 16 25 C -0.11 0.22 4.86 -26.70 -0.13 0.09 16 26 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.06 -0.09 6.43 -51.93 -0.33 -0.42 16 28 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.06 -0.05 6.43 -51.93 -0.33 -0.38 16 31 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.07 -0.05 6.43 -51.93 -0.33 -0.38 16 34 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 37 H 0.40 -1.88 8.60 -40.82 -0.35 -2.23 16 38 H 0.09 -0.30 7.65 -51.93 -0.40 -0.69 16 39 H 0.09 -0.31 7.67 -51.93 -0.40 -0.71 16 40 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 41 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 42 H 0.38 -0.34 8.70 45.56 0.40 0.06 16 43 H -0.26 -0.65 7.11 56.52 0.40 -0.25 16 44 H -0.26 -0.24 7.01 56.52 0.40 0.16 16 45 H 0.13 -0.25 4.84 -52.49 -0.25 -0.50 16 46 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 47 H 0.13 -0.37 6.30 -52.49 -0.33 -0.70 16 48 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 49 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 50 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 51 H 0.07 -0.16 6.43 -51.93 -0.33 -0.50 16 LS Contribution 396.88 15.07 5.98 5.98 Total: 0.00 -8.28 396.88 -11.58 -19.86 By element: Atomic # 1 Polarization: -5.28 SS G_CDS: -8.60 Total: -13.88 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.54 Total: -0.59 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -0.27 Total: 0.78 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -1.06 Total: -6.53 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.08 Total: -5.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -8.28 -11.58 -19.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_4860298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.165 kcal (2) G-P(sol) polarization free energy of solvation -8.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds