Wall clock time and date at job start Sun Mar 7 2021 02:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47131 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47232 * 300.00126 * 7 6 4 9 9 H 1.09001 * 109.47375 * 299.99867 * 8 7 6 10 10 N 1.46507 * 109.47235 * 180.02562 * 8 7 6 11 11 C 1.34774 * 119.99955 * 84.99733 * 10 8 7 12 12 O 1.21273 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99735 * 180.02562 * 11 10 8 14 14 O 1.42894 * 109.46917 * 180.02562 * 13 11 10 15 15 C 1.35900 * 116.99769 * 179.97438 * 14 13 11 16 16 C 1.38716 * 120.05427 * 179.97438 * 15 14 13 17 17 C 1.38164 * 119.94078 * 180.02562 * 16 15 14 18 18 C 1.50705 * 119.96904 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47167 * 65.00112 * 18 17 16 20 20 Si 1.86303 * 109.47036 * 185.00018 * 18 17 16 21 21 C 1.38244 * 120.06113 * 0.02562 * 17 16 15 22 22 C 1.38285 * 120.10875 * 359.97438 * 21 17 16 23 23 C 1.38130 * 120.05667 * 359.76569 * 22 21 17 24 24 C 1.52996 * 109.46975 * 60.00237 * 8 7 6 25 25 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09000 * 109.47380 * 300.00763 * 6 4 2 34 34 H 1.09001 * 109.46997 * 60.00426 * 6 4 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47076 * 60.00779 * 7 6 4 37 37 H 0.97003 * 119.99391 * 265.00486 * 10 8 7 38 38 H 1.09007 * 109.46994 * 300.00084 * 13 11 10 39 39 H 1.08994 * 109.46915 * 59.99909 * 13 11 10 40 40 H 1.07998 * 120.02812 * 0.02995 * 16 15 14 41 41 H 1.08997 * 109.47474 * 304.99784 * 18 17 16 42 42 H 0.96702 * 114.00104 * 59.99965 * 19 18 17 43 43 H 1.48502 * 109.99733 * 180.02562 * 20 18 17 44 44 H 1.48500 * 110.00121 * 301.31850 * 20 18 17 45 45 H 1.08002 * 119.94822 * 180.02562 * 21 17 16 46 46 H 1.07998 * 119.97401 * 180.02562 * 22 21 17 47 47 H 1.07998 * 120.02624 * 180.27289 * 23 22 21 48 48 H 1.09004 * 109.47108 * 179.97438 * 24 8 7 49 49 H 1.09001 * 109.47367 * 60.00185 * 24 8 7 50 50 H 1.08998 * 109.47624 * 300.00318 * 25 4 2 51 51 H 1.09002 * 109.47045 * 59.99942 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7207 -1.2495 7 6 4.0800 -1.4414 -2.4990 8 6 3.5705 -2.8841 -2.4994 9 1 3.9342 -3.3981 -1.6096 10 7 4.0594 -3.5744 -3.6956 11 6 5.2816 -4.1425 -3.6936 12 8 5.9764 -4.0826 -2.7015 13 6 5.7846 -4.8520 -4.9243 14 8 7.0944 -5.3663 -4.6756 15 6 7.6960 -6.0395 -5.6914 16 6 8.9681 -6.5651 -5.5191 17 6 9.5778 -7.2486 -6.5535 18 6 10.9601 -7.8194 -6.3673 19 8 10.9222 -8.8438 -5.3717 20 14 11.5563 -8.5406 -7.9782 21 6 8.9214 -7.4084 -7.7597 22 6 7.6532 -6.8854 -7.9339 23 6 7.0371 -6.2059 -6.9011 24 6 2.0406 -2.8846 -2.4991 25 6 1.5301 -2.1637 -1.2492 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9330 0.3071 -1.2496 34 1 3.9337 -1.2343 -0.3595 35 1 5.1700 -1.4414 -2.4990 36 1 3.7164 -0.9274 -3.3888 37 1 3.5034 -3.6224 -4.4890 38 1 5.1124 -5.6743 -5.1699 39 1 5.8213 -4.1512 -5.7582 40 1 9.4815 -6.4402 -4.5772 41 1 11.6398 -7.0288 -6.0495 42 1 10.3357 -9.5815 -5.5885 43 1 12.9183 -9.1074 -7.8076 44 1 10.6208 -9.5980 -8.4385 45 1 9.3995 -7.9434 -8.5669 46 1 7.1422 -7.0119 -8.8769 47 1 6.0449 -5.8014 -7.0362 48 1 1.6776 -3.9124 -2.4998 49 1 1.6769 -2.3707 -3.3889 50 1 1.8933 -2.6776 -0.3592 51 1 0.4400 -2.1637 -1.2492 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_4860298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:11 Heat of formation + Delta-G solvation = -95.960916 kcal Electronic energy + Delta-G solvation = -28359.969085 eV Core-core repulsion = 24418.320427 eV Total energy + Delta-G solvation = -3941.648657 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64993 -40.96503 -39.84449 -38.95830 -37.37607 -36.69225 -34.24874 -32.50782 -31.92811 -31.74329 -30.23561 -28.43700 -28.01768 -26.80736 -24.05872 -23.69649 -23.49448 -22.48830 -21.57317 -21.13667 -20.60747 -19.36300 -18.56733 -17.91142 -17.46328 -17.35275 -17.09820 -16.86911 -16.30810 -16.18203 -15.67067 -15.49224 -15.30229 -15.14082 -14.97220 -14.74529 -14.55946 -14.42013 -14.22045 -14.14972 -13.98602 -13.49526 -13.38959 -13.08142 -13.02544 -12.80516 -12.68111 -12.61385 -12.31836 -12.12107 -12.11434 -12.05062 -12.01005 -11.63766 -11.60425 -11.33510 -11.23934 -10.99140 -10.85625 -10.67150 -10.14992 -9.95641 -9.30162 -4.91314 0.19406 0.38040 1.26832 1.41223 1.48572 1.60843 1.96178 2.57436 2.65281 3.39653 3.48254 3.63876 3.65683 3.68617 3.77031 3.85039 3.98136 4.01616 4.03931 4.11495 4.12367 4.23710 4.27930 4.31309 4.35278 4.36959 4.49584 4.52774 4.52960 4.63689 4.65117 4.66429 4.78711 4.82174 4.97137 4.99874 5.00893 5.02645 5.07765 5.13065 5.17907 5.19156 5.23461 5.27986 5.34218 5.35975 5.36526 5.43794 5.46516 5.54300 5.62165 5.68748 6.26405 6.45375 6.46011 7.11205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.112 4.112 7 C -0.124 4.124 8 C 0.147 3.853 9 H 0.059 0.941 10 N -0.706 5.706 11 C 0.511 3.489 12 O -0.574 6.574 13 C 0.039 3.961 14 O -0.324 6.324 15 C 0.113 3.887 16 C -0.150 4.150 17 C -0.081 4.081 18 C -0.096 4.096 19 O -0.551 6.551 20 Si 0.787 3.213 21 C -0.158 4.158 22 C -0.070 4.070 23 C -0.201 4.201 24 C -0.116 4.116 25 C -0.113 4.113 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.421 0.579 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.386 0.614 43 H -0.305 1.305 44 H -0.274 1.274 45 H 0.149 0.851 46 H 0.163 0.837 47 H 0.161 0.839 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.055 0.945 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 2.110 -8.239 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.162 4.162 8 C 0.043 3.957 9 H 0.077 0.923 10 N -0.359 5.359 11 C 0.297 3.703 12 O -0.453 6.453 13 C -0.039 4.039 14 O -0.238 6.238 15 C 0.068 3.932 16 C -0.169 4.169 17 C -0.082 4.082 18 C -0.203 4.203 19 O -0.360 6.360 20 Si 0.691 3.309 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.220 4.220 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.259 0.741 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.235 0.765 43 H -0.234 1.234 44 H -0.201 1.201 45 H 0.166 0.834 46 H 0.181 0.819 47 H 0.178 0.822 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.073 0.927 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.330 1.887 -7.449 9.956 hybrid contribution -0.451 -0.704 1.054 1.345 sum -6.781 1.183 -6.395 9.395 Atomic orbital electron populations 1.21891 0.94739 1.02139 1.01801 1.21136 0.96105 0.96049 0.97877 1.21906 1.01046 0.96040 1.01812 1.21184 0.94090 0.95828 0.98335 0.90281 1.21589 0.95996 1.00458 0.96996 1.21854 0.99586 0.95212 0.99571 1.21003 0.95254 0.92092 0.87365 0.92299 1.45788 1.16533 1.55699 1.17918 1.20600 0.82014 0.78658 0.89034 1.90762 1.57406 1.60444 1.36673 1.22732 0.83865 1.00778 0.96532 1.86126 1.31056 1.68644 1.37930 1.19215 0.92786 0.93413 0.87814 1.20308 0.94073 1.02180 1.00323 1.20121 0.96627 0.97641 0.93779 1.25488 0.96291 0.94163 1.04392 1.86586 1.69707 1.33954 1.45709 0.93837 0.75546 0.83952 0.77562 1.21254 0.96459 1.03118 0.96746 1.21335 0.94033 0.94017 0.99372 1.21638 1.02579 1.05234 0.92530 1.21768 0.91551 1.02025 1.00082 1.21620 1.01468 0.94750 0.97278 0.92344 0.91927 0.93127 0.92081 0.92694 0.92378 0.92995 0.91196 0.93145 0.94149 0.90182 0.74109 0.85759 0.85586 0.87110 0.86429 0.76450 1.23372 1.20051 0.83430 0.81926 0.82169 0.90536 0.89292 0.92666 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 8.84 71.98 0.64 1.08 16 2 C -0.09 0.18 2.51 -10.79 -0.03 0.15 16 3 C -0.15 0.22 8.84 71.98 0.64 0.85 16 4 C -0.08 0.24 1.77 -10.80 -0.02 0.22 16 5 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 6 C -0.11 0.02 4.85 30.59 0.15 0.16 16 7 C -0.12 -0.05 5.49 30.59 0.17 0.12 16 8 C 0.15 -0.08 2.45 44.99 0.11 0.03 16 9 H 0.06 0.37 7.58 -2.39 -0.02 0.35 16 10 N -0.71 2.26 5.08 -442.54 -2.25 0.01 16 11 C 0.51 2.16 7.87 87.66 0.69 2.85 16 12 O -0.57 -9.52 16.16 16.03 0.26 -9.26 16 13 C 0.04 -0.08 5.22 71.24 0.37 0.30 16 14 O -0.32 -2.58 9.67 -73.39 -0.71 -3.29 16 15 C 0.11 0.56 6.69 22.51 0.15 0.71 16 16 C -0.15 -1.08 9.62 22.37 0.22 -0.86 16 17 C -0.08 -0.21 5.35 -19.88 -0.11 -0.32 16 18 C -0.10 -0.20 2.80 71.24 0.20 0.00 16 19 O -0.55 -3.29 12.83 -148.98 -1.91 -5.20 16 20 Si 0.79 -1.36 29.88 68.60 2.05 0.69 16 21 C -0.16 0.29 8.67 22.28 0.19 0.49 16 22 C -0.07 0.29 10.04 22.26 0.22 0.51 16 23 C -0.20 0.47 9.04 22.37 0.20 0.68 16 24 C -0.12 0.68 5.39 30.61 0.17 0.85 16 25 C -0.11 0.47 4.86 30.61 0.15 0.62 16 26 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.06 -0.24 6.43 -2.39 -0.02 -0.26 16 28 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.05 -0.04 6.43 -2.39 -0.02 -0.06 16 31 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 -0.01 6.43 -2.39 -0.02 -0.03 16 34 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.42 -4.80 8.60 -92.71 -0.80 -5.59 16 38 H 0.12 -1.06 7.65 -2.38 -0.02 -1.08 16 39 H 0.13 -1.10 7.67 -2.39 -0.02 -1.12 16 40 H 0.11 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.12 0.20 7.96 -2.39 -0.02 0.18 16 42 H 0.39 -0.13 8.70 -74.06 -0.64 -0.77 16 43 H -0.31 -1.92 7.11 99.48 0.71 -1.21 16 44 H -0.27 -0.16 7.01 99.48 0.70 0.53 16 45 H 0.15 -0.90 4.84 -2.91 -0.01 -0.91 16 46 H 0.16 -1.70 8.06 -2.91 -0.02 -1.72 16 47 H 0.16 -1.50 6.30 -2.91 -0.02 -1.52 16 48 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 49 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.08 -0.48 6.43 -2.39 -0.02 -0.50 16 Total: 0.00 -24.48 396.88 1.06 -23.42 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -0.49 Total: -14.79 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.11 Total: 8.44 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -2.25 Total: 0.01 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -2.36 Total: -17.75 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.05 Total: 0.69 kcal Total: -24.48 1.06 -23.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_4860298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.543 kcal (2) G-P(sol) polarization free energy of solvation -24.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds