Wall clock time and date at job start Sun Mar 7 2021 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99870 * 2 1 4 4 C 1.38617 * 120.02776 * 180.22595 * 3 2 1 5 5 C 1.38650 * 119.89255 * 180.27872 * 4 3 2 6 6 O 1.35899 * 120.02767 * 179.77483 * 5 4 3 7 7 C 1.42893 * 116.99868 * 359.72347 * 6 5 4 8 8 C 1.50703 * 109.46977 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00101 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99874 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47391 * 325.00213 * 11 10 8 13 13 C 1.53000 * 109.46840 * 85.00543 * 11 10 8 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 11 16 16 H 1.09002 * 109.47067 * 300.00341 * 15 14 13 17 17 C 1.53002 * 109.47454 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46978 * 59.99922 * 17 15 14 19 19 C 1.52993 * 109.47066 * 180.02562 * 17 15 14 20 20 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 21 21 C 1.53002 * 109.46799 * 205.00309 * 11 10 8 22 22 C 1.38754 * 119.94292 * 359.49730 * 5 4 3 23 23 C 1.50701 * 119.97135 * 180.23277 * 22 5 4 24 24 O 1.42901 * 109.47174 * 75.00038 * 23 22 5 25 25 Si 1.86297 * 109.47009 * 195.00004 * 23 22 5 26 26 C 1.38194 * 120.05354 * 0.25040 * 22 5 4 27 27 C 1.38147 * 120.11313 * 0.02562 * 26 22 5 28 28 H 1.08994 * 109.47215 * 299.99701 * 1 2 3 29 29 H 1.09006 * 109.47122 * 60.00031 * 1 2 3 30 30 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.05295 * 0.03145 * 4 3 2 32 32 H 1.09002 * 109.47397 * 60.00302 * 7 6 5 33 33 H 1.09003 * 109.47076 * 299.99636 * 7 6 5 34 34 H 0.97002 * 119.99716 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47194 * 299.99493 * 13 11 10 36 36 H 1.08992 * 109.47399 * 59.99666 * 13 11 10 37 37 H 1.09000 * 109.47437 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 11 39 39 H 1.09002 * 109.46838 * 300.00606 * 17 15 14 40 40 H 1.09000 * 109.47140 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47375 * 300.00092 * 18 17 15 42 42 H 1.09002 * 109.47045 * 60.00167 * 18 17 15 43 43 H 1.08996 * 109.47340 * 60.00420 * 19 17 15 44 44 H 1.09000 * 109.46925 * 180.02562 * 19 17 15 45 45 H 1.09002 * 109.47726 * 299.99988 * 19 17 15 46 46 H 1.09001 * 109.47375 * 180.02562 * 20 15 14 47 47 H 1.09002 * 109.47497 * 59.99850 * 20 15 14 48 48 H 1.09002 * 109.47075 * 299.99543 * 21 11 10 49 49 H 1.08996 * 109.47407 * 60.00500 * 21 11 10 50 50 H 1.08998 * 109.47055 * 314.99957 * 23 22 5 51 51 H 0.96696 * 114.00117 * 59.99554 * 24 23 22 52 52 H 1.48496 * 110.00230 * 58.67909 * 25 23 22 53 53 H 1.48497 * 110.00170 * 179.97438 * 25 23 22 54 54 H 1.08003 * 119.94612 * 179.97438 * 26 22 5 55 55 H 1.08005 * 119.97816 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4302 1.2841 -0.0047 5 6 4.0567 2.5210 0.0011 6 8 5.4136 2.5960 0.0011 7 6 6.1316 1.3605 0.0011 8 6 7.6124 1.6401 0.0017 9 8 8.0134 2.7847 0.0017 10 7 8.4912 0.6182 0.0023 11 6 9.9308 0.8900 0.0024 12 1 10.1317 1.7844 -0.5874 13 6 10.4083 1.1087 1.4394 14 6 11.9117 1.3933 1.4394 15 6 12.6559 0.2034 0.8302 16 1 12.4554 -0.6912 1.4199 17 6 14.1593 0.4875 0.8307 18 6 14.6365 0.7059 2.2679 19 6 14.9034 -0.7021 0.2210 20 6 12.1783 -0.0154 -0.6068 21 6 10.6745 -0.3003 -0.6067 22 6 3.2971 3.6821 0.0012 23 6 3.9774 5.0268 0.0022 24 8 4.5045 5.2950 -1.2987 25 14 2.7436 6.3466 0.4566 26 6 1.9172 3.6065 0.0006 27 6 1.2906 2.3753 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0197 0.3792 -0.0089 32 1 5.8699 0.7882 -0.8890 33 1 5.8699 0.7882 0.8911 34 1 8.1705 -0.2973 0.0019 35 1 9.8785 1.9567 1.8733 36 1 10.2074 0.2144 2.0291 37 1 12.2521 1.5486 2.4632 38 1 12.1122 2.2878 0.8497 39 1 14.3601 1.3822 0.2414 40 1 15.7074 0.9088 2.2683 41 1 14.1063 1.5537 2.7019 42 1 14.4356 -0.1887 2.8573 43 1 14.5634 -0.8572 -0.8030 44 1 15.9745 -0.4998 0.2218 45 1 14.7026 -1.5970 0.8100 46 1 12.7082 -0.8634 -1.0407 47 1 12.3788 0.8791 -1.1965 48 1 10.4737 -1.1946 -0.0169 49 1 10.3343 -0.4561 -1.6304 50 1 4.7894 5.0226 0.7294 51 1 3.8364 5.3138 -1.9975 52 1 2.1646 6.0618 1.7940 53 1 3.4022 7.6775 0.4618 54 1 1.3277 4.5114 0.0010 55 1 0.2120 2.3187 -0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_4974312.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:19 Heat of formation + Delta-G solvation = -131.756080 kcal Electronic energy + Delta-G solvation = -33277.326252 eV Core-core repulsion = 28859.905589 eV Total energy + Delta-G solvation = -4417.420663 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87819 -41.20259 -40.18260 -39.57030 -38.31006 -36.95929 -36.69405 -34.26508 -32.29953 -31.95086 -31.52920 -30.31705 -28.60329 -28.27609 -28.03257 -26.12435 -24.32707 -23.51732 -23.33212 -22.49842 -21.65056 -21.19962 -20.62476 -19.94986 -18.64452 -18.07914 -17.88768 -17.56658 -17.35465 -17.00037 -16.69859 -16.53470 -16.34801 -15.94622 -15.70311 -15.41686 -15.23546 -15.15373 -15.13936 -14.67867 -14.56701 -14.47338 -14.40454 -14.22124 -13.88385 -13.51008 -13.40974 -13.33364 -13.17570 -13.09503 -12.81974 -12.70166 -12.49745 -12.32920 -12.27573 -12.13446 -12.07346 -12.02290 -11.87827 -11.65483 -11.63478 -11.35299 -11.26658 -11.01153 -10.87735 -10.36713 -10.17318 -9.71303 -9.11156 -5.04826 0.19701 0.29070 1.30593 1.38307 1.41603 1.63692 1.97693 2.24360 2.54312 2.57008 3.45698 3.59322 3.61976 3.66573 3.72460 3.76312 3.82431 3.90651 3.97912 3.99941 4.07404 4.09410 4.15542 4.25829 4.29388 4.33831 4.34818 4.38547 4.43628 4.45515 4.47758 4.50686 4.60138 4.62593 4.64654 4.76651 4.79719 4.80878 4.97732 4.99252 5.00718 5.01256 5.05574 5.11325 5.15681 5.17300 5.22538 5.25918 5.26924 5.32228 5.34769 5.43820 5.47836 5.52731 5.60487 6.11075 6.35102 6.42027 6.85409 7.08041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.254 4.254 5 C 0.172 3.828 6 O -0.306 6.306 7 C 0.036 3.964 8 C 0.512 3.488 9 O -0.569 6.569 10 N -0.707 5.707 11 C 0.148 3.852 12 H 0.060 0.940 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.076 4.076 16 H 0.078 0.922 17 C -0.093 4.093 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.203 4.203 23 C -0.070 4.070 24 O -0.558 6.558 25 Si 0.797 3.203 26 C -0.031 4.031 27 C -0.237 4.237 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.420 0.580 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.391 0.609 52 H -0.280 1.280 53 H -0.304 1.304 54 H 0.167 0.833 55 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -7.636 -1.481 9.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.273 4.273 5 C 0.126 3.874 6 O -0.218 6.218 7 C -0.042 4.042 8 C 0.298 3.702 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.043 3.957 12 H 0.078 0.922 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.095 4.095 16 H 0.097 0.903 17 C -0.111 4.111 18 C -0.208 4.208 19 C -0.206 4.206 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.204 4.204 23 C -0.178 4.178 24 O -0.365 6.365 25 Si 0.701 3.299 26 C -0.048 4.048 27 C -0.255 4.255 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.169 0.831 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.240 0.760 52 H -0.206 1.206 53 H -0.233 1.233 54 H 0.184 0.816 55 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.745 -6.232 -0.599 7.856 hybrid contribution 0.518 -0.580 0.369 0.861 sum -4.227 -6.812 -0.230 8.021 Atomic orbital electron populations 1.23415 0.75909 1.05725 1.02800 1.86055 1.23851 1.26574 1.87931 1.18874 0.91561 0.85111 0.92706 1.20543 0.93572 0.97295 1.15923 1.18647 0.81674 0.93373 0.93717 1.86223 1.15699 1.31677 1.88181 1.22730 0.88488 0.86485 1.06516 1.20497 0.88553 0.85283 0.75832 1.90772 1.80749 1.23290 1.49903 1.45795 1.06058 1.09490 1.74684 1.21013 0.78547 0.99421 0.96670 0.92215 1.21855 0.96414 1.01588 0.96380 1.21588 0.93609 0.98349 1.01431 1.21189 0.93758 0.98067 0.96448 0.90335 1.21130 0.94528 0.98768 0.96697 1.21906 1.00882 1.01760 0.96260 1.21889 0.99825 0.97747 1.01104 1.21619 0.94516 1.02423 0.96504 1.21774 0.95150 0.96781 1.01739 1.19751 0.93872 0.93972 1.12852 1.25156 1.04377 0.99787 0.88453 1.86543 1.39305 1.93703 1.16992 0.94121 0.80264 0.72977 0.82514 1.20865 0.91458 0.98663 0.93848 1.21454 1.01817 0.91127 1.11152 0.91320 0.91007 0.86613 0.83113 0.86053 0.86213 0.74247 0.94273 0.90297 0.91202 0.93086 0.92025 0.92910 0.92742 0.92411 0.91902 0.93050 0.92380 0.89774 0.92581 0.89374 0.90513 0.90344 0.76010 1.20621 1.23256 0.81581 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.28 10.49 -92.40 -0.97 -1.24 16 3 C 0.16 0.31 6.68 22.49 0.15 0.46 16 4 C -0.25 -0.79 8.97 22.46 0.20 -0.59 16 5 C 0.17 1.19 6.66 22.49 0.15 1.34 16 6 O -0.31 -3.18 8.99 -73.37 -0.66 -3.84 16 7 C 0.04 0.06 5.22 71.24 0.37 0.43 16 8 C 0.51 3.56 7.87 87.66 0.69 4.25 16 9 O -0.57 -10.75 16.16 16.01 0.26 -10.49 16 10 N -0.71 0.49 5.08 -442.52 -2.25 -1.76 16 11 C 0.15 0.20 2.45 44.99 0.11 0.31 16 12 H 0.06 0.47 7.58 -2.39 -0.02 0.46 16 13 C -0.12 -0.27 5.49 30.59 0.17 -0.10 16 14 C -0.11 -0.13 4.85 30.60 0.15 0.02 16 15 C -0.08 0.15 1.77 -10.79 -0.02 0.13 16 16 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 17 C -0.09 0.10 2.51 -10.80 -0.03 0.07 16 18 C -0.15 0.09 8.84 71.98 0.64 0.73 16 19 C -0.15 0.33 8.84 71.98 0.64 0.97 16 20 C -0.11 0.34 4.85 30.61 0.15 0.49 16 21 C -0.12 0.49 5.40 30.61 0.17 0.66 16 22 C -0.20 -1.03 5.27 -19.75 -0.10 -1.14 16 23 C -0.07 -0.50 2.37 71.24 0.17 -0.33 16 24 O -0.56 -4.87 12.88 -148.98 -1.92 -6.79 16 25 Si 0.80 0.99 29.91 68.60 2.05 3.04 16 26 C -0.03 0.03 8.65 22.24 0.19 0.22 16 27 C -0.24 0.36 9.04 22.38 0.20 0.56 16 28 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 29 H 0.07 -0.64 7.66 -2.38 -0.02 -0.66 16 30 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.15 -0.16 6.30 -2.91 -0.02 -0.18 16 32 H 0.12 -0.50 7.65 -2.39 -0.02 -0.52 16 33 H 0.12 -0.49 7.67 -2.39 -0.02 -0.51 16 34 H 0.42 -3.58 8.60 -92.71 -0.80 -4.37 16 35 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.07 0.08 6.43 -2.39 -0.02 0.06 16 38 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.05 0.01 6.43 -2.39 -0.02 -0.01 16 42 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.06 -0.20 6.43 -2.39 -0.02 -0.21 16 44 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.06 -0.16 8.14 -2.39 -0.02 -0.17 16 46 H 0.08 -0.40 6.43 -2.39 -0.02 -0.42 16 47 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.08 1.03 7.82 -2.39 -0.02 1.02 16 51 H 0.39 -0.57 8.70 -74.06 -0.64 -1.21 16 52 H -0.28 -1.35 7.11 99.48 0.71 -0.64 16 53 H -0.30 -2.86 7.11 99.48 0.71 -2.15 16 54 H 0.17 -1.26 5.12 -2.91 -0.01 -1.27 16 55 H 0.16 -1.19 6.29 -2.91 -0.02 -1.20 16 Total: 0.00 -27.56 425.91 1.11 -26.45 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: -0.50 Total: -14.87 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.10 Total: 9.49 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -2.25 Total: -1.76 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -3.29 Total: -22.36 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: 2.05 Total: 3.04 kcal Total: -27.56 1.11 -26.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_4974312.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.307 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds