Wall clock time and date at job start Sun Mar 7 2021 02:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07070 * 359.73996 * 4 3 2 6 6 C 1.42895 * 117.00064 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47460 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47510 * 325.00542 * 10 9 7 12 12 C 1.53004 * 109.46631 * 85.00753 * 10 9 7 13 13 C 1.53003 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46852 * 299.99580 * 13 12 10 15 15 H 1.09002 * 109.47154 * 300.00161 * 14 13 12 16 16 C 1.52998 * 109.47455 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.46811 * 59.99788 * 16 14 13 18 18 C 1.53001 * 109.47455 * 180.02562 * 16 14 13 19 19 C 1.53007 * 109.47283 * 59.99932 * 14 13 12 20 20 C 1.52998 * 109.47184 * 300.00355 * 19 14 13 21 21 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 22 22 C 1.38247 * 119.99917 * 359.97438 * 21 4 3 23 23 C 1.38245 * 120.14442 * 0.02562 * 22 21 4 24 24 C 1.50705 * 119.92645 * 179.97438 * 23 22 21 25 25 O 1.42893 * 109.47682 * 244.99996 * 24 23 22 26 26 Si 1.86303 * 109.46713 * 5.00096 * 24 23 22 27 27 C 1.38237 * 120.15353 * 359.95521 * 23 22 21 28 28 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 29 29 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 30 30 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47268 * 300.00538 * 6 5 4 32 32 H 1.09005 * 109.46932 * 60.00506 * 6 5 4 33 33 H 0.97002 * 120.00375 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.46989 * 299.99296 * 12 10 9 35 35 H 1.08996 * 109.47652 * 59.99989 * 12 10 9 36 36 H 1.08997 * 109.47411 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47373 * 59.99608 * 13 12 10 38 38 H 1.09002 * 109.47190 * 300.00285 * 16 14 13 39 39 H 1.09001 * 109.46864 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47341 * 300.00573 * 17 16 14 41 41 H 1.09002 * 109.46838 * 60.00281 * 17 16 14 42 42 H 1.08997 * 109.47079 * 59.99983 * 18 16 14 43 43 H 1.08997 * 109.46806 * 180.02562 * 18 16 14 44 44 H 1.09002 * 109.47154 * 300.00307 * 18 16 14 45 45 H 1.08996 * 109.47341 * 179.97438 * 19 14 13 46 46 H 1.09002 * 109.46838 * 60.00036 * 19 14 13 47 47 H 1.09002 * 109.46973 * 299.99598 * 20 19 14 48 48 H 1.08997 * 109.47363 * 179.97438 * 20 19 14 49 49 H 1.07995 * 120.00001 * 179.97438 * 21 4 3 50 50 H 1.08002 * 119.92731 * 179.97438 * 22 21 4 51 51 H 1.09005 * 109.47312 * 124.99331 * 24 23 22 52 52 H 0.96702 * 114.00090 * 59.99481 * 25 24 23 53 53 H 1.48494 * 110.00231 * 58.67961 * 26 24 23 54 54 H 1.48500 * 109.99980 * 179.97438 * 26 24 23 55 55 H 1.07998 * 120.00548 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0043 6 6 5.6003 0.3005 0.0028 7 6 6.2519 -1.0584 0.0081 8 8 5.5669 -2.0592 0.0121 9 7 7.5957 -1.1614 0.0082 10 6 8.2290 -2.4824 0.0139 11 1 7.6271 -3.1715 0.6064 12 6 8.3359 -3.0028 -1.4210 13 6 8.9968 -4.3827 -1.4151 14 6 10.3962 -4.2754 -0.8060 15 1 10.9985 -3.5866 -1.3984 16 6 11.0569 -5.6553 -0.7995 17 6 11.1637 -6.1763 -2.2341 18 6 12.4560 -5.5481 -0.1898 19 6 10.2894 -3.7549 0.6289 20 6 9.6284 -2.3751 0.6230 21 6 4.0604 2.5232 -0.0064 22 6 3.3031 3.6798 -0.0122 23 6 1.9226 3.6056 -0.0117 24 6 1.1018 4.8695 -0.0174 25 8 0.3650 4.9647 1.2032 26 14 2.2312 6.3426 -0.1775 27 6 1.2933 2.3748 -0.0062 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 5.9061 0.8462 -0.8898 32 1 5.9070 0.8543 0.8902 33 1 8.1435 -0.3609 0.0054 34 1 7.3389 -3.0797 -1.8548 35 1 8.9378 -2.3138 -2.0135 36 1 9.0726 -4.7537 -2.4372 37 1 8.3945 -5.0715 -0.8227 38 1 10.4545 -6.3438 -0.2068 39 1 11.6348 -7.1593 -2.2296 40 1 10.1667 -6.2528 -2.6681 41 1 11.7661 -5.4879 -2.8268 42 1 12.3795 -5.1771 0.8323 43 1 12.9268 -6.5312 -0.1856 44 1 13.0587 -4.8595 -0.7820 45 1 11.2862 -3.6789 1.0630 46 1 9.6871 -4.4437 1.2213 47 1 10.2307 -1.6863 0.0306 48 1 9.5519 -2.0045 1.6452 49 1 5.1387 2.5838 -0.0064 50 1 3.7909 4.6433 -0.0163 51 1 0.4095 4.8494 -0.8591 52 1 0.9184 4.9874 1.9959 53 1 3.0262 6.2396 -1.4275 54 1 1.4339 7.5954 -0.1851 55 1 0.2147 2.3197 -0.0063 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_60476.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:29 Heat of formation + Delta-G solvation = -129.942695 kcal Electronic energy + Delta-G solvation = -32911.155894 eV Core-core repulsion = 28493.813865 eV Total energy + Delta-G solvation = -4417.342029 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.84331 -41.17056 -39.98756 -39.20770 -38.85310 -36.95864 -36.64765 -34.21874 -32.06531 -31.91237 -31.48590 -30.39078 -28.68702 -28.31711 -28.00955 -26.18834 -24.17907 -23.47587 -23.33829 -22.52433 -21.59542 -21.15228 -20.59755 -19.78974 -18.61903 -18.35402 -17.93022 -17.52215 -17.30519 -17.09376 -16.68593 -16.33400 -16.09577 -15.88271 -15.66194 -15.56204 -15.37895 -15.18216 -15.11110 -14.72824 -14.52885 -14.41633 -14.28567 -14.19238 -13.77411 -13.61405 -13.48232 -13.37395 -13.07118 -12.80360 -12.67399 -12.62374 -12.53861 -12.30425 -12.17803 -12.12513 -12.09875 -12.03552 -11.98025 -11.76056 -11.62213 -11.32236 -11.21611 -10.97046 -10.82399 -10.43350 -10.11502 -9.80253 -8.92459 -4.97015 0.15759 0.27050 1.33575 1.46256 1.49567 1.67904 2.00425 2.29599 2.55326 2.57833 3.48830 3.51316 3.65713 3.69360 3.70754 3.79114 3.85914 3.91923 4.02922 4.04129 4.08210 4.13006 4.15132 4.27515 4.28290 4.29873 4.32707 4.34837 4.38644 4.49199 4.51247 4.54821 4.62853 4.63974 4.66247 4.67707 4.80320 4.82941 4.99695 5.01532 5.02114 5.04125 5.09274 5.11618 5.14450 5.19486 5.20842 5.29505 5.36269 5.36441 5.37704 5.48664 5.55411 5.58986 5.63489 5.96102 6.42692 6.54566 6.77851 7.16429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.035 3.965 7 C 0.510 3.490 8 O -0.574 6.574 9 N -0.706 5.706 10 C 0.148 3.852 11 H 0.058 0.942 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.076 4.076 15 H 0.079 0.921 16 C -0.093 4.093 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.159 4.159 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.077 4.077 25 O -0.557 6.557 26 Si 0.788 3.212 27 C -0.153 4.153 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.421 0.579 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.177 0.823 50 H 0.162 0.838 51 H 0.103 0.897 52 H 0.396 0.604 53 H -0.280 1.280 54 H -0.303 1.303 55 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 5.503 1.832 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.030 3.970 4 C 0.039 3.961 5 O -0.229 6.229 6 C -0.043 4.043 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.360 5.360 10 C 0.043 3.957 11 H 0.077 0.923 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.094 4.094 15 H 0.097 0.903 16 C -0.112 4.112 17 C -0.208 4.208 18 C -0.206 4.206 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.186 4.186 25 O -0.366 6.366 26 Si 0.693 3.307 27 C -0.172 4.172 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.259 0.741 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.194 0.806 50 H 0.179 0.821 51 H 0.120 0.880 52 H 0.246 0.754 53 H -0.207 1.207 54 H -0.231 1.231 55 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.126 5.068 0.964 8.797 hybrid contribution -0.938 -0.456 -0.485 1.150 sum 6.188 4.612 0.479 7.732 Atomic orbital electron populations 1.23276 0.76854 1.05178 1.02062 1.86191 1.22964 1.26690 1.89112 1.18682 0.89955 0.85581 1.02753 1.18608 0.88183 0.86602 1.02745 1.86225 1.18273 1.29090 1.89287 1.22786 0.79297 0.95165 1.07029 1.20611 0.83160 0.90857 0.75702 1.90770 1.64155 1.40253 1.50062 1.45773 1.05071 1.10418 1.74689 1.20991 0.94456 0.83670 0.96565 0.92324 1.21857 1.00052 0.97825 0.96515 1.21589 0.96096 0.95984 1.01367 1.21185 0.95201 0.96513 0.96524 0.90301 1.21138 0.96884 0.96486 0.96665 1.21907 1.01678 1.00902 0.96323 1.21889 0.95846 1.01697 1.01122 1.21613 1.01420 0.95647 0.96445 1.21756 0.93066 0.98743 1.01808 1.21396 1.02324 0.89279 1.04732 1.21009 0.92199 0.98986 1.00321 1.20207 0.94569 0.94793 1.02477 1.25279 1.01030 1.02305 0.89978 1.86466 1.37532 1.96598 1.15960 0.93669 0.79186 0.72458 0.85368 1.21014 1.00454 0.90629 1.05082 0.91677 0.91917 0.87111 0.85662 0.85212 0.74073 0.94285 0.90224 0.91297 0.93156 0.92071 0.92989 0.92734 0.92408 0.91870 0.93133 0.92365 0.89820 0.92664 0.89292 0.90414 0.80566 0.82115 0.87968 0.75443 1.20683 1.23126 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 113.37 1.11 1.18 16 2 O -0.34 -4.01 10.28 -79.62 -0.82 -4.83 16 3 C 0.08 0.66 6.70 22.57 0.15 0.81 16 4 C 0.08 0.51 6.70 22.57 0.15 0.66 16 5 O -0.32 -2.91 9.45 -67.08 -0.63 -3.55 16 6 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 7 C 0.51 2.35 7.87 87.66 0.69 3.04 16 8 O -0.57 -9.97 16.16 16.01 0.26 -9.71 16 9 N -0.71 2.21 5.08 -442.52 -2.25 -0.04 16 10 C 0.15 -0.06 2.45 44.99 0.11 0.05 16 11 H 0.06 0.37 7.58 -2.39 -0.02 0.36 16 12 C -0.12 -0.10 5.49 30.60 0.17 0.07 16 13 C -0.11 -0.02 4.85 30.60 0.15 0.13 16 14 C -0.08 0.23 1.78 -10.79 -0.02 0.21 16 15 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 16 C -0.09 0.17 2.50 -10.79 -0.03 0.14 16 17 C -0.15 0.19 8.84 71.98 0.64 0.83 16 18 C -0.15 0.44 8.84 71.98 0.64 1.08 16 19 C -0.11 0.48 4.85 30.60 0.15 0.63 16 20 C -0.12 0.69 5.39 30.59 0.16 0.85 16 21 C -0.16 0.40 9.04 22.35 0.20 0.60 16 22 C -0.11 0.37 8.66 22.27 0.19 0.56 16 23 C -0.12 -0.05 5.35 -19.86 -0.11 -0.15 16 24 C -0.08 0.07 2.80 71.24 0.20 0.27 16 25 O -0.56 -0.03 12.83 -148.98 -1.91 -1.94 16 26 Si 0.79 -3.21 29.79 68.60 2.04 -1.17 16 27 C -0.15 -0.68 8.67 22.35 0.19 -0.49 16 28 H 0.06 0.06 7.67 -2.39 -0.02 0.05 16 29 H 0.06 0.07 7.65 -2.39 -0.02 0.05 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.13 -1.10 7.66 -2.39 -0.02 -1.12 16 32 H 0.13 -1.23 7.66 -2.38 -0.02 -1.25 16 33 H 0.42 -4.87 8.60 -92.71 -0.80 -5.67 16 34 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.07 0.02 6.43 -2.39 -0.02 0.00 16 37 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.05 -0.03 6.43 -2.39 -0.02 -0.04 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 42 H 0.06 -0.25 6.43 -2.39 -0.02 -0.26 16 43 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.08 -0.49 6.43 -2.39 -0.02 -0.51 16 46 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.18 -1.93 6.30 -2.91 -0.02 -1.95 16 50 H 0.16 -1.56 4.89 -2.91 -0.01 -1.58 16 51 H 0.10 0.07 7.96 -2.38 -0.02 0.05 16 52 H 0.40 -3.22 8.70 -74.06 -0.64 -3.86 16 53 H -0.28 0.03 7.11 99.48 0.71 0.73 16 54 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 55 H 0.14 0.44 6.30 -2.91 -0.02 0.43 16 Total: 0.00 -28.99 426.19 1.31 -27.68 By element: Atomic # 1 Polarization: -16.72 SS G_CDS: -0.50 Total: -17.22 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.13 Total: 10.78 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -2.25 Total: -0.04 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -3.11 Total: -20.03 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.04 Total: -1.17 kcal Total: -28.99 1.31 -27.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_60476.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.266 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds