Wall clock time and date at job start Sun Mar 7 2021 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 C 1.53002 * 109.47233 * 60.00670 * 4 2 1 7 7 C 1.52997 * 109.47415 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46978 * 300.00098 * 7 6 4 9 9 H 1.09002 * 109.46838 * 299.99316 * 8 7 6 10 10 N 1.46497 * 109.46729 * 179.97438 * 8 7 6 11 11 C 1.34778 * 119.99664 * 155.00120 * 10 8 7 12 12 O 1.21694 * 120.00417 * 359.97438 * 11 10 8 13 13 C 1.46681 * 119.99697 * 180.02562 * 11 10 8 14 14 C 1.37869 * 126.23333 * 179.69041 * 13 11 10 15 15 C 1.39837 * 107.09162 * 179.84441 * 14 13 11 16 16 C 1.35459 * 107.86024 * 0.41463 * 15 14 13 17 17 C 1.50693 * 125.56620 * 179.76182 * 16 15 14 18 18 O 1.42902 * 109.47244 * 244.97599 * 17 16 15 19 19 Si 1.86301 * 109.47131 * 4.97784 * 17 16 15 20 20 N 1.35544 * 108.86895 * 359.73982 * 16 15 14 21 21 C 1.53002 * 109.47128 * 59.99726 * 8 7 6 22 22 C 1.52992 * 109.47106 * 300.00123 * 21 8 7 23 23 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 27 27 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 28 28 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 29 29 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46986 * 299.99797 * 6 4 2 31 31 H 1.09002 * 109.47075 * 59.99068 * 6 4 2 32 32 H 1.09002 * 109.47045 * 59.99931 * 7 6 4 33 33 H 1.08998 * 109.47171 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00413 * 334.99384 * 10 8 7 35 35 H 1.08003 * 126.45684 * 359.97438 * 14 13 11 36 36 H 1.07999 * 126.07211 * 180.15727 * 15 14 13 37 37 H 1.09001 * 109.47219 * 124.97200 * 17 16 15 38 38 H 0.96702 * 113.99363 * 59.99820 * 18 17 16 39 39 H 1.48500 * 110.00099 * 58.67888 * 19 17 16 40 40 H 1.48494 * 110.00252 * 180.02562 * 19 17 16 41 41 H 0.96998 * 125.67314 * 180.02562 * 20 16 15 42 42 H 1.09002 * 109.47070 * 60.00059 * 21 8 7 43 43 H 1.08996 * 109.46550 * 179.97438 * 21 8 7 44 44 H 1.09002 * 109.47103 * 299.99915 * 22 21 8 45 45 H 1.08998 * 109.46862 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 1.5301 -2.1638 1.2493 7 6 2.0405 -2.8852 2.4982 8 6 3.5705 -2.8850 2.4977 9 1 3.9336 -3.3988 1.6076 10 7 4.0592 -3.5753 3.6939 11 6 5.2812 -4.1437 3.6919 12 8 5.9785 -4.0840 2.6963 13 6 5.7703 -4.8353 4.8894 14 6 6.9898 -5.4636 5.0267 15 6 7.0410 -5.9827 6.3241 16 6 5.8738 -5.6774 6.9400 17 6 5.5040 -6.0514 8.3522 18 8 4.3971 -6.9550 8.3314 19 14 6.9588 -6.8704 9.1790 20 7 5.0930 -4.9802 6.0789 21 6 4.0804 -1.4425 2.4977 22 6 3.5699 -0.7211 1.2488 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 0.4401 -2.1638 1.2492 31 1 1.8934 -2.6775 0.3593 32 1 1.6774 -2.3715 3.3884 33 1 1.6769 -3.9127 2.4984 34 1 3.5034 -3.6231 4.4874 35 1 7.7613 -5.5386 4.2746 36 1 7.8632 -6.5333 6.7568 37 1 5.2297 -5.1535 8.9059 38 1 4.5703 -7.7780 7.8542 39 1 8.1262 -5.9526 9.1786 40 1 6.6068 -7.2447 10.5722 41 1 4.2049 -4.6398 6.2694 42 1 3.7173 -0.9288 3.3879 43 1 5.1704 -1.4425 2.4978 44 1 3.9330 -1.2348 0.3586 45 1 3.9336 0.3064 1.2486 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_6580494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:43 Heat of formation + Delta-G solvation = -48.579327 kcal Electronic energy + Delta-G solvation = -23782.613067 eV Core-core repulsion = 20380.039070 eV Total energy + Delta-G solvation = -3402.573997 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54840 -40.95406 -39.61050 -37.67459 -36.76126 -34.29730 -32.19631 -31.96134 -31.45972 -29.52821 -28.03287 -26.79241 -24.31142 -23.52595 -22.81239 -21.58264 -21.42597 -20.98216 -20.64896 -19.75270 -18.10522 -17.47877 -16.81870 -16.45269 -16.26127 -15.81025 -15.41819 -15.22330 -15.18161 -15.09744 -14.73304 -14.54227 -14.39960 -14.34540 -14.16288 -13.96903 -13.69802 -13.42405 -13.09905 -12.83471 -12.70536 -12.34487 -12.21457 -12.13559 -12.08485 -12.06894 -11.65930 -11.46806 -11.35127 -11.05294 -10.95189 -10.65765 -10.24039 -10.08619 -9.29315 -4.90873 0.28166 1.23157 1.53281 1.72822 1.89862 1.98880 2.20838 2.25652 3.47169 3.56848 3.60955 3.64633 3.70304 3.83528 3.98848 4.07853 4.24095 4.25416 4.28951 4.30062 4.33848 4.43817 4.47320 4.49658 4.61972 4.64425 4.76055 4.80820 4.94160 4.96529 4.98685 5.00424 5.04930 5.09451 5.12134 5.15406 5.16695 5.25402 5.30681 5.34532 5.42626 5.52600 5.58303 5.60596 5.78296 6.26288 6.44041 6.68002 7.01930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.148 3.852 9 H 0.067 0.933 10 N -0.714 5.714 11 C 0.587 3.413 12 O -0.570 6.570 13 C -0.065 4.065 14 C -0.118 4.118 15 C -0.204 4.204 16 C 0.028 3.972 17 C -0.055 4.055 18 O -0.554 6.554 19 Si 0.805 3.195 20 N -0.513 5.513 21 C -0.123 4.123 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.408 0.592 35 H 0.145 0.855 36 H 0.171 0.829 37 H 0.116 0.884 38 H 0.399 0.601 39 H -0.287 1.287 40 H -0.295 1.295 41 H 0.427 0.573 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -1.445 2.570 4.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.156 4.156 8 C 0.044 3.956 9 H 0.086 0.914 10 N -0.365 5.365 11 C 0.376 3.624 12 O -0.450 6.450 13 C -0.179 4.179 14 C -0.145 4.145 15 C -0.228 4.228 16 C -0.091 4.091 17 C -0.164 4.164 18 O -0.362 6.362 19 Si 0.709 3.291 20 N -0.110 5.110 21 C -0.162 4.162 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.244 0.756 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.133 0.867 38 H 0.250 0.750 39 H -0.214 1.214 40 H -0.223 1.223 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.154 -0.812 2.827 4.312 hybrid contribution -0.697 0.856 0.057 1.105 sum -3.850 0.044 2.884 4.811 Atomic orbital electron populations 1.21897 0.94835 1.02139 1.01759 1.21125 0.96023 0.96033 0.97852 1.21909 1.01119 0.96044 1.01764 1.21192 0.94252 0.95798 0.98308 0.90680 1.21598 1.01417 0.94736 0.97187 1.21767 0.91815 1.01915 1.00094 1.21040 0.95130 0.92169 0.87297 0.91446 1.45887 1.16843 1.56161 1.17585 1.17280 0.81559 0.77629 0.85922 1.90841 1.57588 1.61760 1.34788 1.20324 0.96888 1.12725 0.87958 1.21500 0.95788 0.99222 0.98016 1.20959 0.98916 1.08233 0.94664 1.21377 0.92896 1.00595 0.94195 1.25044 1.01114 0.97632 0.92631 1.86477 1.37863 1.32834 1.79040 0.92955 0.72635 0.85990 0.77546 1.41904 1.16741 1.42435 1.09928 1.21849 0.99764 0.95112 0.99466 1.21578 0.95830 1.00478 0.96977 0.92554 0.93003 0.91917 0.91747 0.92876 0.92601 0.92579 0.89939 0.92203 0.89939 0.90673 0.75625 0.83693 0.81177 0.86679 0.75027 1.21362 1.22256 0.73354 0.90921 0.93842 0.92607 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 8.84 71.98 0.64 1.03 16 2 C -0.09 0.17 2.51 -10.79 -0.03 0.14 16 3 C -0.15 0.19 8.84 71.98 0.64 0.83 16 4 C -0.08 0.20 1.78 -10.79 -0.02 0.18 16 5 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 6 C -0.11 0.40 4.85 30.59 0.15 0.55 16 7 C -0.12 0.51 5.39 30.59 0.16 0.67 16 8 C 0.15 0.11 2.45 44.99 0.11 0.22 16 9 H 0.07 0.41 7.58 -2.39 -0.02 0.40 16 10 N -0.71 -0.06 5.07 -446.49 -2.26 -2.33 16 11 C 0.59 4.16 7.75 86.45 0.67 4.83 16 12 O -0.57 -9.00 16.55 -4.33 -0.07 -9.07 16 13 C -0.07 -0.26 7.06 40.35 0.28 0.03 16 14 C -0.12 -0.54 10.65 22.57 0.24 -0.30 16 15 C -0.20 0.10 9.32 22.01 0.21 0.30 16 16 C 0.03 -0.06 6.47 41.34 0.27 0.21 16 17 C -0.05 0.25 3.08 71.23 0.22 0.47 16 18 O -0.55 2.43 12.88 -148.98 -1.92 0.51 16 19 Si 0.80 -4.15 30.56 68.60 2.10 -2.05 16 20 N -0.51 1.02 5.99 -171.93 -1.03 -0.01 16 21 C -0.12 -0.18 5.49 30.59 0.17 -0.01 16 22 C -0.11 0.00 4.85 30.59 0.15 0.14 16 23 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.06 -0.22 6.43 -2.39 -0.02 -0.24 16 26 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.06 -0.05 6.43 -2.39 -0.02 -0.06 16 30 H 0.08 -0.42 6.43 -2.39 -0.02 -0.43 16 31 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 32 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.41 -2.52 7.73 -92.71 -0.72 -3.24 16 35 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.17 -0.91 6.19 -2.91 -0.02 -0.93 16 37 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 38 H 0.40 -4.59 8.70 -74.06 -0.64 -5.23 16 39 H -0.29 -0.20 7.11 99.48 0.71 0.51 16 40 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 41 H 0.43 -3.02 8.19 -92.71 -0.76 -3.78 16 42 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.07 0.00 6.43 -2.39 -0.02 -0.01 16 Total: 0.00 -17.43 352.41 -0.42 -17.85 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: -1.08 Total: -14.20 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 3.85 Total: 9.30 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -3.30 Total: -2.34 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -1.99 Total: -8.56 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.10 Total: -2.05 kcal Total: -17.43 -0.42 -17.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_6580494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.730 kcal (2) G-P(sol) polarization free energy of solvation -17.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds