Wall clock time and date at job start Sun Mar 7 2021 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35970 * 117.00109 * 2 1 4 4 C 1.39449 * 120.12540 * 179.97438 * 3 2 1 5 5 O 1.34776 * 133.24314 * 0.29425 * 4 3 2 6 6 C 1.34921 * 110.84254 * 180.15262 * 5 4 3 7 7 C 1.46995 * 125.14095 * 179.81646 * 6 5 4 8 8 O 1.21648 * 119.99710 * 179.69538 * 7 6 5 9 9 N 1.34778 * 119.99840 * 359.69197 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47397 * 325.00275 * 10 9 7 12 12 C 1.53002 * 109.46799 * 85.00174 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 16 16 C 1.53002 * 109.47197 * 180.02562 * 14 13 12 17 17 C 1.52993 * 109.47066 * 59.99847 * 16 14 13 18 18 C 1.53000 * 109.46806 * 179.97438 * 16 14 13 19 19 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 20 20 C 1.52997 * 109.47317 * 300.00546 * 19 14 13 21 21 C 1.35809 * 109.72000 * 359.55024 * 6 5 4 22 22 C 1.40605 * 119.13466 * 179.97438 * 4 3 2 23 23 C 1.39778 * 120.12426 * 359.97438 * 22 4 3 24 24 C 1.50698 * 120.09544 * 179.97438 * 23 22 4 25 25 O 1.42900 * 109.47152 * 285.00221 * 24 23 22 26 26 Si 1.86301 * 109.47102 * 165.00379 * 24 23 22 27 27 C 1.36632 * 119.80910 * 0.02850 * 23 22 4 28 28 C 1.38263 * 120.11482 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.47248 * 60.00180 * 1 2 3 30 30 H 1.09008 * 109.46767 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47437 * 300.00032 * 1 2 3 32 32 H 0.97006 * 119.99662 * 0.02562 * 9 7 6 33 33 H 1.08993 * 109.47662 * 299.99952 * 12 10 9 34 34 H 1.09002 * 109.47075 * 60.00457 * 12 10 9 35 35 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 36 36 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.46838 * 299.99316 * 16 14 13 38 38 H 1.08996 * 109.47340 * 299.99580 * 17 16 14 39 39 H 1.09002 * 109.47726 * 60.00012 * 17 16 14 40 40 H 1.09000 * 109.46925 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47194 * 60.00125 * 18 16 14 42 42 H 1.09004 * 109.46724 * 179.97438 * 18 16 14 43 43 H 1.08992 * 109.47399 * 299.99952 * 18 16 14 44 44 H 1.08996 * 109.46929 * 179.97438 * 19 14 13 45 45 H 1.09002 * 109.46716 * 60.00455 * 19 14 13 46 46 H 1.09002 * 109.47153 * 299.99641 * 20 19 14 47 47 H 1.09001 * 109.46832 * 179.97438 * 20 19 14 48 48 H 1.08000 * 126.96022 * 180.24889 * 21 6 5 49 49 H 1.08998 * 109.47115 * 45.00274 * 24 23 22 50 50 H 0.96706 * 113.99982 * 300.00077 * 25 24 23 51 51 H 1.48499 * 109.99879 * 180.02562 * 26 24 23 52 52 H 1.48500 * 109.99892 * 301.31652 * 26 24 23 53 53 H 1.08005 * 119.74989 * 180.02562 * 27 23 22 54 54 H 1.07998 * 119.66516 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2875 0.0005 5 8 4.4142 0.3575 -0.0039 6 6 5.6317 0.9389 0.0024 7 6 6.9132 0.2187 0.0039 8 8 7.9595 0.8392 0.0042 9 7 6.9288 -1.1290 0.0049 10 6 8.2059 -1.8467 0.0068 11 1 8.9357 -1.2913 -0.5821 12 6 8.7104 -1.9859 1.4446 13 6 10.0438 -2.7360 1.4467 14 6 9.8482 -4.1260 0.8380 15 1 9.1181 -4.6811 1.4270 16 6 11.1816 -4.8763 0.8407 17 6 11.6854 -5.0156 2.2786 18 6 10.9857 -6.2665 0.2326 19 6 9.3436 -3.9868 -0.5997 20 6 8.0101 -3.2367 -0.6018 21 6 5.4944 2.2900 0.0014 22 6 4.0553 2.5511 0.0000 23 6 3.2764 3.7118 -0.0016 24 6 3.9379 5.0658 -0.0017 25 8 4.4588 5.3415 1.3002 26 14 2.6867 6.3683 -0.4584 27 6 1.9135 3.6151 -0.0021 28 6 1.2956 2.3726 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 6.0943 -1.6236 0.0042 33 1 8.8494 -0.9957 1.8784 34 1 7.9805 -2.5414 2.0335 35 1 10.7739 -2.1809 0.8577 36 1 10.4031 -2.8356 2.4710 37 1 11.9119 -4.3214 0.2518 38 1 11.8249 -4.0253 2.7122 39 1 10.9551 -5.5705 2.8675 40 1 12.6351 -5.5505 2.2806 41 1 10.6265 -6.1677 -0.7918 42 1 11.9358 -6.8009 0.2341 43 1 10.2555 -6.8212 0.8217 44 1 9.2047 -4.9770 -1.0334 45 1 10.0737 -3.4317 -1.1887 46 1 7.2800 -3.7918 -0.0128 47 1 7.6509 -3.1371 -1.6261 48 1 6.2873 3.0233 0.0017 49 1 4.7512 5.0728 -0.7274 50 1 3.7892 5.3510 1.9978 51 1 3.3268 7.7082 -0.4626 52 1 2.1141 6.0753 -1.7969 53 1 1.3126 4.5126 -0.0038 54 1 0.2173 2.3119 -0.0005 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_6672420.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:47 Heat of formation + Delta-G solvation = -88.468706 kcal Electronic energy + Delta-G solvation = -34464.274428 eV Core-core repulsion = 29947.816185 eV Total energy + Delta-G solvation = -4516.458244 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.197 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.80366 -41.34784 -40.61316 -39.76246 -39.08647 -37.02161 -36.85149 -34.29545 -33.69557 -31.96679 -31.95872 -31.16529 -29.59938 -28.43413 -28.02043 -26.33556 -25.40740 -24.02192 -23.54775 -23.50640 -21.96504 -21.77078 -21.28222 -20.64875 -19.75120 -19.03451 -18.57742 -17.91478 -17.79110 -17.46651 -17.00306 -16.64686 -16.48128 -16.23264 -15.93689 -15.76291 -15.63117 -15.28809 -15.18091 -14.77874 -14.60230 -14.57613 -14.52411 -14.41326 -14.24000 -14.17013 -13.59130 -13.43222 -13.42159 -13.29222 -13.08986 -12.86914 -12.71561 -12.41873 -12.35256 -12.30177 -12.13570 -12.10164 -12.07337 -11.92393 -11.74120 -11.64770 -11.34007 -11.09456 -11.05187 -10.96412 -10.45831 -10.31280 -9.86021 -9.03013 -5.01155 -0.71804 0.07699 0.56767 1.12841 1.29251 1.67409 1.82430 1.85420 1.99623 2.12211 2.37631 3.12835 3.39548 3.58482 3.60980 3.65268 3.66754 3.73238 3.79256 3.84859 3.95539 3.99051 4.07001 4.15074 4.24045 4.29358 4.32701 4.34526 4.38950 4.42951 4.43271 4.45558 4.49602 4.61538 4.64979 4.75970 4.76909 4.79139 4.82082 4.84225 4.93044 4.99049 5.01117 5.02143 5.05431 5.11668 5.15229 5.16219 5.19347 5.22665 5.26074 5.33169 5.35590 5.42382 5.53588 5.55572 5.61540 6.15693 6.26690 6.76566 6.77652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.019 3.981 5 O -0.181 6.181 6 C -0.033 4.033 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.700 5.700 10 C 0.144 3.856 11 H 0.074 0.926 12 C -0.125 4.125 13 C -0.110 4.110 14 C -0.078 4.078 15 H 0.075 0.925 16 C -0.091 4.091 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.099 4.099 23 C -0.108 4.108 24 C -0.082 4.082 25 O -0.555 6.555 26 Si 0.798 3.202 27 C -0.078 4.078 28 C -0.164 4.164 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.416 0.584 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.168 0.832 49 H 0.096 0.904 50 H 0.396 0.604 51 H -0.301 1.301 52 H -0.280 1.280 53 H 0.177 0.823 54 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -2.558 1.223 9.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.029 4.029 5 O -0.083 6.083 6 C -0.083 4.083 7 C 0.387 3.613 8 O -0.425 6.425 9 N -0.350 5.350 10 C 0.041 3.959 11 H 0.092 0.908 12 C -0.164 4.164 13 C -0.148 4.148 14 C -0.096 4.096 15 H 0.093 0.907 16 C -0.110 4.110 17 C -0.208 4.208 18 C -0.207 4.207 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.190 4.190 25 O -0.363 6.363 26 Si 0.702 3.298 27 C -0.095 4.095 28 C -0.183 4.183 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.186 0.814 49 H 0.114 0.886 50 H 0.246 0.754 51 H -0.229 1.229 52 H -0.206 1.206 53 H 0.194 0.806 54 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.774 -2.028 0.331 8.041 hybrid contribution 0.491 -0.375 -0.201 0.650 sum -7.283 -2.403 0.130 7.670 Atomic orbital electron populations 1.23499 0.75221 1.06035 1.03274 1.86147 1.24403 1.25805 1.88442 1.18003 0.85973 0.86996 0.99988 1.19251 0.88348 0.87029 1.08245 1.84006 1.12668 1.35082 1.76519 1.21941 0.84076 0.92699 1.09596 1.16706 0.85004 0.82890 0.76722 1.90885 1.31433 1.68275 1.51935 1.45996 1.11402 1.04836 1.72725 1.21197 0.84036 0.93300 0.97370 0.90773 1.21874 0.98394 1.00257 0.95839 1.21582 0.95950 0.95547 1.01700 1.21204 0.96978 0.95144 0.96323 0.90674 1.21121 0.96617 0.96483 0.96763 1.21907 1.00961 1.01746 0.96209 1.21897 1.01658 0.96018 1.01077 1.21595 0.95635 1.00903 0.96699 1.21783 0.99372 0.92997 1.01582 1.22840 0.95537 0.94420 1.00919 1.19595 0.92211 0.93027 1.05160 1.19691 0.93824 0.93877 1.03536 1.25384 1.05891 0.98688 0.89027 1.86506 1.39694 1.93333 1.16791 0.93840 0.80307 0.73036 0.82608 1.20805 0.92368 0.98673 0.97682 1.21441 1.02005 0.89477 1.05338 0.90668 0.86712 0.90364 0.74695 0.93476 0.90813 0.92373 0.90941 0.91666 0.92514 0.92608 0.92873 0.91958 0.92975 0.92570 0.89881 0.92013 0.89946 0.90717 0.81444 0.88638 0.75423 1.22918 1.20607 0.80639 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.80 10.50 -93.22 -0.98 -1.78 16 3 C 0.14 0.42 6.70 22.57 0.15 0.57 16 4 C 0.02 0.16 7.35 23.14 0.17 0.33 16 5 O -0.18 -1.72 10.28 -13.34 -0.14 -1.86 16 6 C -0.03 -0.33 7.07 24.00 0.17 -0.16 16 7 C 0.60 6.25 7.76 86.54 0.67 6.92 16 8 O -0.55 -9.06 16.49 -4.18 -0.07 -9.13 16 9 N -0.70 -2.88 5.07 -446.22 -2.26 -5.14 16 10 C 0.14 0.37 2.46 44.99 0.11 0.48 16 11 H 0.07 0.49 7.58 -2.39 -0.02 0.48 16 12 C -0.13 -0.32 5.49 30.59 0.17 -0.15 16 13 C -0.11 -0.06 4.85 30.60 0.15 0.09 16 14 C -0.08 0.14 1.77 -10.79 -0.02 0.12 16 15 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 16 C -0.09 0.12 2.51 -10.80 -0.03 0.10 16 17 C -0.15 0.14 8.84 71.98 0.64 0.77 16 18 C -0.15 0.31 8.84 71.98 0.64 0.95 16 19 C -0.11 0.28 4.85 30.59 0.15 0.43 16 20 C -0.12 0.27 5.39 30.59 0.16 0.44 16 21 C -0.12 -1.17 10.68 23.79 0.25 -0.92 16 22 C -0.10 -0.74 6.16 -20.24 -0.12 -0.86 16 23 C -0.11 -0.19 5.26 -19.87 -0.10 -0.29 16 24 C -0.08 -0.08 2.70 71.24 0.19 0.11 16 25 O -0.56 -1.12 12.88 -148.98 -1.92 -3.04 16 26 Si 0.80 -2.85 29.93 68.60 2.05 -0.80 16 27 C -0.08 0.33 8.62 22.02 0.19 0.52 16 28 C -0.16 0.64 9.03 22.40 0.20 0.84 16 29 H 0.07 -0.78 7.66 -2.39 -0.02 -0.80 16 30 H 0.11 -1.10 8.14 -2.38 -0.02 -1.12 16 31 H 0.08 -0.85 7.66 -2.39 -0.02 -0.86 16 32 H 0.42 0.16 8.32 -92.70 -0.77 -0.62 16 33 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.07 0.02 6.43 -2.39 -0.02 0.01 16 37 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 -0.03 6.43 -2.39 -0.02 -0.05 16 39 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.06 -0.18 6.43 -2.39 -0.02 -0.19 16 42 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.08 -0.33 6.43 -2.39 -0.02 -0.35 16 45 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 47 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.10 0.37 7.96 -2.39 -0.02 0.35 16 50 H 0.40 -2.80 8.70 -74.05 -0.64 -3.44 16 51 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 52 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 53 H 0.18 -2.09 5.07 -2.91 -0.01 -2.11 16 54 H 0.18 -2.12 6.26 -2.91 -0.02 -2.14 16 Total: 0.00 -21.62 424.34 1.09 -20.53 By element: Atomic # 1 Polarization: -9.61 SS G_CDS: -0.45 Total: -10.06 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.85 Total: 11.27 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -2.26 Total: -5.14 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -3.10 Total: -15.81 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.05 Total: -0.80 kcal Total: -21.62 1.09 -20.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_6672420.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.938 kcal (2) G-P(sol) polarization free energy of solvation -21.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds