Wall clock time and date at job start Sun Mar 7 2021 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33810 * 122.44973 * 2 1 4 4 C 1.50702 * 124.52540 * 0.04329 * 3 2 1 5 5 O 1.42894 * 109.46868 * 330.00009 * 4 3 2 6 6 Si 1.86298 * 109.46987 * 210.00017 * 4 3 2 7 7 S 1.70619 * 110.95266 * 180.02562 * 3 2 1 8 8 C 1.75829 * 91.56491 * 0.02562 * 7 3 2 9 9 C 1.46576 * 125.45906 * 179.97438 * 8 7 3 10 10 O 1.21705 * 120.00159 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00128 * 0.03233 * 9 8 7 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46872 * 324.99405 * 12 11 9 14 14 C 1.52997 * 109.47277 * 84.99368 * 12 11 9 15 15 C 1.52996 * 109.47165 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46972 * 300.00293 * 15 14 12 17 17 H 1.09000 * 109.46986 * 299.99742 * 16 15 14 18 18 C 1.52996 * 109.47346 * 179.97438 * 16 15 14 19 19 C 1.53008 * 109.47219 * 59.99802 * 18 16 15 20 20 C 1.53002 * 109.47343 * 179.97438 * 18 16 15 21 21 C 1.52997 * 109.47415 * 59.99860 * 16 15 14 22 22 C 1.52999 * 109.46691 * 204.99775 * 12 11 9 23 23 C 1.36653 * 109.08267 * 0.24246 * 8 7 3 24 24 H 1.09002 * 109.46694 * 89.99917 * 1 2 3 25 25 H 1.08998 * 109.47114 * 210.00085 * 1 2 3 26 26 H 1.08999 * 109.47113 * 330.00289 * 1 2 3 27 27 H 1.09004 * 109.47175 * 89.99962 * 4 3 2 28 28 H 0.96707 * 113.99944 * 299.99951 * 5 4 3 29 29 H 1.48492 * 110.00439 * 58.68069 * 6 4 3 30 30 H 1.48502 * 109.99748 * 179.97438 * 6 4 3 31 31 H 0.97000 * 119.99750 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.47140 * 60.00200 * 14 12 11 33 33 H 1.09001 * 109.47375 * 300.00183 * 14 12 11 34 34 H 1.08992 * 109.47534 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47134 * 59.99508 * 15 14 12 36 36 H 1.09004 * 109.47368 * 299.99812 * 18 16 15 37 37 H 1.09000 * 109.47188 * 60.00209 * 19 18 16 38 38 H 1.09002 * 109.47288 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.46630 * 300.00058 * 19 18 16 40 40 H 1.09002 * 109.47067 * 179.97438 * 20 18 16 41 41 H 1.09000 * 109.47312 * 299.99943 * 20 18 16 42 42 H 1.09004 * 109.46930 * 59.99999 * 20 18 16 43 43 H 1.09001 * 109.46922 * 180.02562 * 21 16 15 44 44 H 1.09000 * 109.47140 * 59.99976 * 21 16 15 45 45 H 1.08993 * 109.47839 * 59.99891 * 22 12 11 46 46 H 1.09000 * 109.47160 * 299.99453 * 22 12 11 47 47 H 1.07999 * 123.35371 * 179.75999 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 0.0009 5 8 0.3751 2.4984 -0.6719 6 14 2.7921 3.6829 -0.8776 7 16 3.8970 0.7891 -0.0007 8 6 3.5937 -0.9428 -0.0018 9 6 4.6230 -1.9863 -0.0033 10 8 4.3001 -3.1598 -0.0045 11 7 5.9273 -1.6464 -0.0034 12 6 6.9561 -2.6894 -0.0055 13 1 6.6122 -3.5401 0.5829 14 6 7.2241 -3.1387 -1.4433 15 6 8.2980 -4.2283 -1.4454 16 6 9.5873 -3.6748 -0.8353 17 1 9.9316 -2.8242 -1.4235 18 6 10.6612 -4.7646 -0.8368 19 6 10.9294 -5.2144 -2.2744 20 6 11.9507 -4.2109 -0.2272 21 6 9.3194 -3.2256 0.6025 22 6 8.2452 -2.1353 0.6044 23 6 2.2446 -1.1602 -0.0070 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.4941 2.8501 1.0289 28 1 0.4253 2.2102 -1.5937 29 1 3.0183 3.2210 -2.2705 30 1 2.2219 5.0541 -0.8840 31 1 6.1847 -0.7112 -0.0028 32 1 7.5679 -2.2880 -2.0316 33 1 6.3056 -3.5334 -1.8778 34 1 8.4893 -4.5481 -2.4696 35 1 7.9538 -5.0789 -0.8571 36 1 10.3167 -5.6150 -0.2483 37 1 11.2739 -4.3641 -2.8629 38 1 11.6941 -5.9912 -2.2755 39 1 10.0108 -5.6088 -2.7090 40 1 12.7156 -4.9874 -0.2279 41 1 12.2951 -3.3607 -0.8161 42 1 11.7600 -3.8901 0.7969 43 1 10.2379 -2.8308 1.0369 44 1 8.9751 -4.0762 1.1907 45 1 8.0544 -1.8153 1.6287 46 1 8.5891 -1.2846 0.0161 47 1 1.8018 -2.1452 -0.0125 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:52 Heat of formation + Delta-G solvation = -59.892899 kcal Electronic energy + Delta-G solvation = -25441.259223 eV Core-core repulsion = 21909.009031 eV Total energy + Delta-G solvation = -3532.250192 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30230 -40.18403 -39.54988 -37.47591 -36.67526 -34.23881 -32.18549 -31.90725 -30.25501 -29.59304 -27.99486 -26.45622 -24.68815 -23.49886 -23.46443 -21.74574 -21.24072 -20.60644 -20.18030 -19.33115 -17.97400 -17.41550 -17.13481 -16.59673 -16.38911 -16.11844 -15.79047 -15.35789 -15.15583 -15.15225 -14.68446 -14.53844 -14.43355 -14.39033 -14.17932 -13.91634 -13.54220 -13.37700 -13.14717 -13.07347 -13.00154 -12.79478 -12.65070 -12.41412 -12.30468 -12.24201 -12.09184 -12.02887 -11.84701 -11.61762 -11.38790 -11.30261 -11.00829 -10.90721 -10.88486 -10.20101 -9.67949 -9.38009 -5.12390 -0.67388 0.30093 0.70587 1.06685 1.31656 1.54449 1.87713 1.98322 2.06004 3.22858 3.54075 3.61697 3.68617 3.72699 3.83923 4.03309 4.08990 4.12344 4.27393 4.29963 4.33297 4.39251 4.49273 4.50677 4.54871 4.56288 4.65921 4.68628 4.79271 4.80884 4.83752 4.85142 4.98420 5.02181 5.03071 5.04533 5.09831 5.15302 5.20284 5.21507 5.30099 5.34691 5.36962 5.38788 5.42473 5.47668 5.56777 5.64721 6.35123 6.35527 7.02441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.109 4.109 3 C -0.238 4.238 4 C -0.038 4.038 5 O -0.530 6.530 6 Si 0.739 3.261 7 S 0.268 5.732 8 C -0.287 4.287 9 C 0.589 3.411 10 O -0.573 6.573 11 N -0.710 5.710 12 C 0.147 3.853 13 H 0.066 0.934 14 C -0.124 4.124 15 C -0.110 4.110 16 C -0.078 4.078 17 H 0.077 0.923 18 C -0.092 4.092 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.387 0.613 29 H -0.275 1.275 30 H -0.275 1.275 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 5.036 0.630 6.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.358 4.358 4 C -0.149 4.149 5 O -0.338 6.338 6 Si 0.640 3.360 7 S 0.537 5.463 8 C -0.407 4.407 9 C 0.376 3.624 10 O -0.454 6.454 11 N -0.361 5.361 12 C 0.043 3.957 13 H 0.084 0.916 14 C -0.163 4.163 15 C -0.149 4.149 16 C -0.096 4.096 17 H 0.096 0.904 18 C -0.110 4.110 19 C -0.208 4.208 20 C -0.206 4.206 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.096 4.096 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.159 0.841 28 H 0.237 0.763 29 H -0.200 1.200 30 H -0.201 1.201 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.793 5.876 0.541 8.269 hybrid contribution -2.406 -1.421 -0.831 2.915 sum 3.387 4.455 -0.290 5.604 Atomic orbital electron populations 1.20606 0.88307 1.03158 1.02982 1.18740 0.98835 0.90540 1.04068 1.24691 0.99616 1.00915 1.10554 1.24671 0.91142 0.94573 1.04509 1.86620 1.28015 1.89224 1.29944 0.94685 0.83342 0.76709 0.81240 1.82322 1.01435 0.95344 1.67155 1.24651 0.97619 0.98772 1.19630 1.17219 0.82620 0.87075 0.75489 1.90825 1.82387 1.20136 1.52055 1.45885 1.04544 1.11117 1.74531 1.21079 0.87504 0.90232 0.96922 0.91550 1.21861 0.98564 0.99634 0.96216 1.21577 0.94416 0.97380 1.01478 1.21200 0.93918 0.97995 0.96478 0.90419 1.21127 0.95460 0.97803 0.96653 1.21912 1.01417 1.01203 0.96307 1.21896 0.96605 1.00979 1.01132 1.21609 0.98719 0.98092 0.96502 1.21799 0.92686 0.99434 1.01787 1.20748 0.91458 1.00144 0.97201 0.90664 0.92032 0.89915 0.84081 0.76267 1.20024 1.20092 0.75235 0.90530 0.93963 0.91176 0.92800 0.91900 0.92489 0.92977 0.92651 0.93112 0.92435 0.91872 0.89799 0.92367 0.90442 0.89514 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.00 8.67 71.24 0.62 0.61 16 2 C -0.11 -0.20 5.75 -21.05 -0.12 -0.32 16 3 C -0.24 0.32 5.53 24.68 0.14 0.46 16 4 C -0.04 0.14 2.76 71.24 0.20 0.34 16 5 O -0.53 0.85 9.85 -148.98 -1.47 -0.62 16 6 Si 0.74 -3.42 31.31 68.60 2.15 -1.27 16 7 S 0.27 -0.97 19.80 -56.49 -1.12 -2.09 16 8 C -0.29 -1.15 6.45 24.08 0.16 -0.99 16 9 C 0.59 4.42 7.75 86.42 0.67 5.08 16 10 O -0.57 -9.28 16.50 -4.37 -0.07 -9.35 16 11 N -0.71 -0.47 5.07 -446.58 -2.27 -2.74 16 12 C 0.15 0.11 2.45 44.99 0.11 0.22 16 13 H 0.07 0.41 7.58 -2.39 -0.02 0.39 16 14 C -0.12 -0.15 5.49 30.59 0.17 0.02 16 15 C -0.11 0.02 4.85 30.59 0.15 0.17 16 16 C -0.08 0.23 1.78 -10.80 -0.02 0.22 16 17 H 0.08 -0.29 8.14 -2.39 -0.02 -0.30 16 18 C -0.09 0.19 2.51 -10.79 -0.03 0.17 16 19 C -0.15 0.23 8.84 71.98 0.64 0.87 16 20 C -0.15 0.46 8.84 71.98 0.64 1.09 16 21 C -0.11 0.45 4.85 30.61 0.15 0.60 16 22 C -0.12 0.57 5.40 30.61 0.17 0.73 16 23 C -0.06 -0.32 9.80 21.72 0.21 -0.10 16 24 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.08 0.04 6.41 -2.39 -0.02 0.03 16 27 H 0.14 -0.85 7.96 -2.38 -0.02 -0.87 16 28 H 0.39 -2.36 8.66 -74.05 -0.64 -3.00 16 29 H -0.27 -0.03 7.11 99.48 0.71 0.67 16 30 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 31 H 0.41 -2.18 7.72 -92.71 -0.72 -2.90 16 32 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 -0.02 6.43 -2.39 -0.02 -0.03 16 35 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.05 -0.05 6.43 -2.39 -0.02 -0.07 16 40 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 -0.25 6.43 -2.38 -0.02 -0.27 16 43 H 0.08 -0.48 6.43 -2.39 -0.02 -0.49 16 44 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 47 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 Total: 0.00 -15.07 374.55 0.71 -14.36 By element: Atomic # 1 Polarization: -7.10 SS G_CDS: -0.35 Total: -7.46 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 3.83 Total: 9.16 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: -2.27 Total: -2.74 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.54 Total: -9.97 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.15 Total: -1.27 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -1.12 Total: -2.09 kcal Total: -15.07 0.71 -14.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.533 kcal (2) G-P(sol) polarization free energy of solvation -15.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds