Wall clock time and date at job start Sun Mar 7 2021 02:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 C 1.52996 * 109.47071 * 120.00012 * 2 1 3 5 5 H 1.09000 * 109.47791 * 299.99817 * 4 2 1 6 6 C 1.52995 * 109.47473 * 60.00426 * 4 2 1 7 7 C 1.52996 * 109.47473 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47071 * 299.99574 * 7 6 4 9 9 H 1.09006 * 109.47065 * 300.00356 * 8 7 6 10 10 N 1.46492 * 109.47186 * 179.97438 * 8 7 6 11 11 C 1.34777 * 120.00003 * 154.99853 * 10 8 7 12 12 O 1.21640 * 120.00062 * 0.02562 * 11 10 8 13 13 C 1.47190 * 120.00433 * 179.97438 * 11 10 8 14 14 C 1.36010 * 123.45579 * 0.02562 * 13 11 10 15 15 S 1.70454 * 110.81487 * 179.69575 * 14 13 11 16 16 C 1.75506 * 92.44355 * 0.26810 * 15 14 13 17 17 C 1.50695 * 124.70909 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47631 * 244.97650 * 17 16 15 19 19 Si 1.86299 * 109.47353 * 4.97891 * 17 16 15 20 20 C 1.32768 * 110.57618 * 0.02562 * 16 15 14 21 21 C 1.53004 * 109.47031 * 59.99988 * 8 7 6 22 22 C 1.53000 * 109.46802 * 300.00264 * 21 8 7 23 23 H 1.09000 * 109.46664 * 299.99480 * 1 2 3 24 24 H 1.08993 * 109.47512 * 59.99919 * 1 2 3 25 25 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47166 * 239.99939 * 2 1 3 27 27 H 1.09006 * 109.46896 * 60.00265 * 3 2 1 28 28 H 1.08993 * 109.47319 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47055 * 300.00156 * 3 2 1 30 30 H 1.09000 * 109.47333 * 59.99725 * 6 4 2 31 31 H 1.09002 * 109.46710 * 299.99944 * 6 4 2 32 32 H 1.09001 * 109.47284 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47390 * 59.99269 * 7 6 4 34 34 H 0.97000 * 120.00489 * 335.00181 * 10 8 7 35 35 H 1.08002 * 124.59604 * 359.96898 * 14 13 11 36 36 H 1.09000 * 109.47031 * 124.97803 * 17 16 15 37 37 H 0.96705 * 113.99856 * 59.99506 * 18 17 16 38 38 H 1.48503 * 110.00043 * 179.97438 * 19 17 16 39 39 H 1.48496 * 109.99915 * 301.31549 * 19 17 16 40 40 H 1.07999 * 123.45731 * 180.02562 * 20 16 15 41 41 H 1.08994 * 109.46771 * 59.99820 * 21 8 7 42 42 H 1.08993 * 109.47503 * 180.02562 * 21 8 7 43 43 H 1.09000 * 109.47496 * 299.99235 * 22 21 8 44 44 H 1.09001 * 109.46883 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -0.2075 2.1393 6 6 1.5302 -2.1637 1.2492 7 6 2.0407 -2.8851 2.4981 8 6 3.5707 -2.8851 2.4975 9 1 3.9337 -3.3988 1.6072 10 7 4.0596 -3.5754 3.6936 11 6 5.2815 -4.1439 3.6914 12 8 5.9787 -4.0836 2.6964 13 6 5.7730 -4.8370 4.8933 14 6 5.0539 -4.9462 6.0426 15 16 5.9246 -5.8167 7.2215 16 6 7.2984 -6.0377 6.1518 17 6 8.5617 -6.7728 6.5184 18 8 9.6599 -5.8584 6.5260 19 14 8.3716 -7.5290 8.2104 20 6 7.0699 -5.4673 4.9749 21 6 4.0807 -1.4426 2.4975 22 6 3.5701 -0.7212 1.2486 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.8935 -2.6776 0.3593 31 1 0.4402 -2.1637 1.2492 32 1 1.6770 -3.9127 2.4983 33 1 1.6778 -2.3715 3.3883 34 1 3.5038 -3.6233 4.4871 35 1 4.0635 -4.5405 6.1872 36 1 8.7493 -7.5596 5.7878 37 1 9.5609 -5.1301 7.1545 38 1 9.6108 -8.2574 8.5833 39 1 8.0840 -6.4698 9.2106 40 1 7.7788 -5.4784 4.1602 41 1 3.7177 -0.9290 3.3876 42 1 5.1706 -1.4425 2.4965 43 1 3.9331 -1.2348 0.3583 44 1 3.9330 0.3066 1.2488 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_6894386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:08:56 Heat of formation + Delta-G solvation = -58.878320 kcal Electronic energy + Delta-G solvation = -23415.080472 eV Core-core repulsion = 20038.411895 eV Total energy + Delta-G solvation = -3376.668578 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35304 -39.95196 -38.84878 -37.25414 -36.67668 -34.22551 -31.92987 -31.86100 -29.45875 -28.01482 -26.96664 -25.79977 -23.65043 -23.48766 -21.98233 -21.32474 -20.70477 -20.31746 -19.02041 -18.11042 -17.85329 -17.10252 -16.48964 -16.40490 -15.97895 -15.66614 -15.39782 -15.17112 -15.10588 -14.59706 -14.58342 -14.33013 -14.24921 -14.03545 -13.66537 -13.58413 -13.38497 -13.07624 -12.83168 -12.68145 -12.61996 -12.44065 -12.30459 -12.10818 -12.05245 -11.86002 -11.62973 -11.33158 -11.22451 -10.98955 -10.89386 -10.73410 -10.18670 -9.99519 -9.45812 -5.03751 -0.34922 0.38675 0.68785 0.80935 1.21868 1.55281 1.90605 2.08305 2.25295 3.29835 3.57058 3.63734 3.68423 3.75093 3.91554 3.97766 4.02542 4.11588 4.26983 4.29348 4.31962 4.37092 4.49059 4.50142 4.53094 4.64709 4.66805 4.70303 4.79131 4.82510 4.97098 5.00718 5.01546 5.03859 5.07803 5.12398 5.16445 5.18177 5.19862 5.28600 5.36052 5.36810 5.49060 5.54697 5.62537 6.39833 6.46799 7.14817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.147 3.853 9 H 0.062 0.938 10 N -0.707 5.707 11 C 0.574 3.426 12 O -0.585 6.585 13 C -0.183 4.183 14 C -0.189 4.189 15 S 0.252 5.748 16 C -0.245 4.245 17 C -0.048 4.048 18 O -0.545 6.545 19 Si 0.731 3.269 20 C -0.077 4.077 21 C -0.123 4.123 22 C -0.111 4.111 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.205 0.795 36 H 0.128 0.872 37 H 0.388 0.612 38 H -0.277 1.277 39 H -0.248 1.248 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -0.580 5.475 9.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.155 4.155 8 C 0.043 3.957 9 H 0.080 0.920 10 N -0.358 5.358 11 C 0.361 3.639 12 O -0.467 6.467 13 C -0.201 4.201 14 C -0.328 4.328 15 S 0.518 5.482 16 C -0.362 4.362 17 C -0.159 4.159 18 O -0.354 6.354 19 Si 0.631 3.369 20 C -0.106 4.106 21 C -0.162 4.162 22 C -0.149 4.149 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.222 0.778 36 H 0.146 0.854 37 H 0.238 0.762 38 H -0.202 1.202 39 H -0.173 1.173 40 H 0.148 0.852 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.697 -1.398 6.622 9.521 hybrid contribution 1.030 1.606 -1.717 2.566 sum -5.668 0.208 4.905 7.498 Atomic orbital electron populations 1.21893 0.94741 1.02165 1.01786 1.21130 0.96098 0.96010 0.97849 1.21909 1.01053 0.96071 1.01794 1.21188 0.94098 0.95858 0.98336 0.90438 1.21602 1.01459 0.94703 0.97235 1.21763 0.91628 1.02003 1.00099 1.21013 0.95239 0.92064 0.87406 0.92006 1.45816 1.16783 1.55660 1.17589 1.17963 0.81567 0.77697 0.86716 1.90790 1.57725 1.61886 1.36272 1.20114 0.96706 1.08042 0.95217 1.26182 1.06020 1.03447 0.97123 1.82973 1.04526 1.47729 1.12941 1.24824 1.02817 1.09705 0.98855 1.24757 0.82370 0.94486 1.14274 1.86615 1.42387 1.41376 1.64980 0.94381 0.87125 0.83026 0.72362 1.20987 0.95225 0.96775 0.97615 1.21847 0.99545 0.95262 0.99506 1.21586 0.95990 1.00396 0.96948 0.92428 0.93062 0.91888 0.91944 0.92473 0.92692 0.92924 0.92485 0.89821 0.90548 0.89560 0.74853 0.77824 0.85429 0.76236 1.20238 1.17319 0.85176 0.90569 0.94217 0.92937 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.41 8.84 71.98 0.64 1.05 16 2 C -0.09 0.15 2.51 -10.79 -0.03 0.13 16 3 C -0.15 0.17 8.84 71.98 0.64 0.81 16 4 C -0.08 0.19 1.78 -10.79 -0.02 0.18 16 5 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 6 C -0.11 0.40 4.85 30.59 0.15 0.55 16 7 C -0.12 0.54 5.39 30.59 0.16 0.70 16 8 C 0.15 0.16 2.45 45.00 0.11 0.27 16 9 H 0.06 0.44 7.58 -2.38 -0.02 0.43 16 10 N -0.71 -0.07 5.05 -446.01 -2.25 -2.32 16 11 C 0.57 4.40 7.76 86.59 0.67 5.07 16 12 O -0.59 -10.23 16.46 -4.16 -0.07 -10.30 16 13 C -0.18 -0.62 5.98 -19.87 -0.12 -0.74 16 14 C -0.19 0.84 10.38 67.30 0.70 1.54 16 15 S 0.25 -1.31 20.20 -56.49 -1.14 -2.45 16 16 C -0.25 -0.09 5.65 24.51 0.14 0.05 16 17 C -0.05 0.01 2.94 71.23 0.21 0.22 16 18 O -0.55 -1.89 12.88 -148.98 -1.92 -3.81 16 19 Si 0.73 -2.50 30.92 68.60 2.12 -0.38 16 20 C -0.08 -0.42 9.95 22.67 0.23 -0.20 16 21 C -0.12 -0.23 5.49 30.60 0.17 -0.06 16 22 C -0.11 -0.06 4.85 30.60 0.15 0.09 16 23 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.06 -0.23 6.43 -2.39 -0.02 -0.25 16 26 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 28 H 0.05 -0.03 6.43 -2.39 -0.02 -0.04 16 29 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.08 -0.45 6.43 -2.39 -0.02 -0.46 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.41 -2.98 7.10 -92.71 -0.66 -3.64 16 35 H 0.20 -2.46 7.01 -2.91 -0.02 -2.48 16 36 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 37 H 0.39 -1.12 8.70 -74.05 -0.64 -1.76 16 38 H -0.28 -1.01 7.11 99.48 0.71 -0.31 16 39 H -0.25 0.43 7.11 99.48 0.71 1.14 16 40 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 0.03 6.43 -2.39 -0.02 0.02 16 Total: 0.00 -17.74 357.20 0.27 -17.47 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: -0.26 Total: -7.85 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.79 Total: 9.65 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -2.25 Total: -2.32 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.99 Total: -14.11 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.12 Total: -0.38 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -1.14 Total: -2.45 kcal Total: -17.74 0.27 -17.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_6894386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.410 kcal (2) G-P(sol) polarization free energy of solvation -17.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds