Wall clock time and date at job start Sun Mar 7 2021 02:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37940 * 120.07089 * 2 1 4 4 C 1.38389 * 120.13833 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.84846 * 180.02562 * 4 3 2 6 6 C 1.38331 * 120.29413 * 359.97438 * 4 3 2 7 7 C 1.50704 * 119.92711 * 180.02562 * 6 4 3 8 8 O 1.42905 * 109.46774 * 74.99989 * 7 6 4 9 9 Si 1.86300 * 109.47122 * 194.99804 * 7 6 4 10 10 C 1.37980 * 120.14865 * 359.71370 * 6 4 3 11 11 C 1.39558 * 119.84708 * 0.58751 * 10 6 4 12 12 C 1.47844 * 120.14342 * 179.69478 * 11 10 6 13 13 O 1.21552 * 120.00162 * 173.73741 * 12 11 10 14 14 N 1.34784 * 120.00101 * 353.73843 * 12 11 10 15 15 C 1.46492 * 119.99942 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47584 * 324.99523 * 15 14 12 17 17 C 1.53002 * 109.47515 * 84.99848 * 15 14 12 18 18 C 1.52996 * 109.47103 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47559 * 300.00035 * 18 17 15 20 20 H 1.08995 * 109.47030 * 299.99861 * 19 18 17 21 21 C 1.53005 * 109.47055 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47236 * 59.99961 * 21 19 18 23 23 C 1.53002 * 109.46711 * 180.02562 * 21 19 18 24 24 C 1.52996 * 109.46813 * 60.00360 * 19 18 17 25 25 C 1.53005 * 109.47224 * 299.99791 * 24 19 18 26 26 H 1.08998 * 109.47472 * 263.39323 * 1 2 3 27 27 H 1.09007 * 109.47071 * 23.39044 * 1 2 3 28 28 H 1.09000 * 109.46934 * 143.38585 * 1 2 3 29 29 H 1.07998 * 119.93248 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46938 * 90.00023 * 5 4 3 31 31 H 1.08997 * 109.47151 * 209.99853 * 5 4 3 32 32 H 1.08995 * 109.47262 * 330.00245 * 5 4 3 33 33 H 1.08997 * 109.47360 * 315.00268 * 7 6 4 34 34 H 0.96701 * 114.00297 * 60.00450 * 8 7 6 35 35 H 1.48495 * 109.99918 * 58.68658 * 9 7 6 36 36 H 1.48501 * 109.99677 * 180.02562 * 9 7 6 37 37 H 1.07995 * 120.07995 * 180.27810 * 10 6 4 38 38 H 0.96997 * 119.99394 * 0.02562 * 14 12 11 39 39 H 1.08996 * 109.46915 * 299.99924 * 17 15 14 40 40 H 1.09005 * 109.46756 * 59.99556 * 17 15 14 41 41 H 1.09004 * 109.46839 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.47251 * 60.00844 * 18 17 15 43 43 H 1.09003 * 109.46767 * 300.00016 * 21 19 18 44 44 H 1.09005 * 109.46895 * 59.99875 * 22 21 19 45 45 H 1.08998 * 109.46777 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.47103 * 300.00043 * 22 21 19 47 47 H 1.08995 * 109.46857 * 299.99289 * 23 21 19 48 48 H 1.08995 * 109.47380 * 59.99565 * 23 21 19 49 49 H 1.08997 * 109.46425 * 179.97438 * 23 21 19 50 50 H 1.09004 * 109.46688 * 180.02562 * 24 19 18 51 51 H 1.08995 * 109.47730 * 59.99929 * 24 19 18 52 52 H 1.09003 * 109.46767 * 300.00340 * 25 24 19 53 53 H 1.08995 * 109.47554 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1937 0.0000 4 6 3.5821 1.1954 -0.0005 5 6 4.3306 2.5033 0.0001 6 6 4.2813 0.0018 -0.0005 7 6 5.7883 0.0132 -0.0005 8 8 6.2619 0.3655 1.3009 9 14 6.4221 -1.6787 -0.4551 10 6 3.6021 -1.1993 0.0060 11 6 2.2065 -1.2080 0.0001 12 6 1.4721 -2.4912 0.0002 13 8 0.2616 -2.4986 0.1100 14 7 2.1449 -3.6527 -0.1214 15 6 1.4172 -4.9241 -0.1219 16 1 0.5632 -4.8542 0.5518 17 6 0.9257 -5.2300 -1.5382 18 6 0.1662 -6.5582 -1.5387 19 6 1.0967 -7.6781 -1.0687 20 1 1.9506 -7.7477 -1.7425 21 6 0.3372 -9.0063 -1.0699 22 6 -0.1537 -9.3119 -2.4864 23 6 1.2676 -10.1261 -0.5993 24 6 1.5880 -7.3722 0.3475 25 6 2.3477 -6.0440 0.3482 26 1 -0.3634 -0.1182 1.0208 27 1 -0.3633 0.9433 -0.4080 28 1 -0.3633 -0.8249 -0.6129 29 1 1.6583 2.1291 0.0004 30 1 4.5114 2.8180 1.0279 31 1 5.2833 2.3770 -0.5142 32 1 3.7384 3.2611 -0.5130 33 1 6.1461 0.7426 -0.7271 34 1 5.9812 -0.2415 1.9993 35 1 5.9106 -2.0700 -1.7931 36 1 7.9071 -1.6807 -0.4580 37 1 4.1491 -2.1304 0.0105 38 1 3.1109 -3.6467 -0.2086 39 1 0.2631 -4.4320 -1.8731 40 1 1.7798 -5.2999 -2.2119 41 1 -0.1835 -6.7763 -2.5478 42 1 -0.6878 -6.4886 -0.8650 43 1 -0.5170 -8.9370 -0.3963 44 1 0.7005 -9.3811 -3.1599 45 1 -0.6943 -10.2583 -2.4872 46 1 -0.8166 -8.5140 -2.8212 47 1 2.1220 -10.1955 -1.2726 48 1 1.6171 -9.9082 0.4098 49 1 0.7264 -11.0722 -0.5997 50 1 2.2513 -8.1699 0.6821 51 1 0.7341 -7.3026 1.0213 52 1 3.2016 -6.1137 -0.3257 53 1 2.6981 -5.8263 1.3570 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_9599494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:09:05 Heat of formation + Delta-G solvation = -66.393988 kcal Electronic energy + Delta-G solvation = -29540.563728 eV Core-core repulsion = 25763.341762 eV Total energy + Delta-G solvation = -3777.221966 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.214 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76751 -40.55569 -39.53646 -37.64124 -36.70875 -34.53163 -34.37915 -33.07588 -31.87420 -29.97236 -29.05135 -28.21581 -27.99273 -25.62083 -24.19013 -23.58703 -23.40926 -22.12864 -21.37978 -20.79038 -20.53758 -18.99323 -17.69386 -17.46791 -16.76028 -16.54043 -16.26866 -16.14495 -16.04087 -15.52767 -15.28068 -15.13463 -14.89617 -14.72597 -14.63017 -14.43727 -14.30481 -14.19527 -14.07786 -13.87351 -13.50325 -13.33715 -13.08722 -13.05923 -12.90679 -12.69541 -12.62944 -12.60871 -12.50355 -12.25108 -12.15273 -12.06116 -12.00176 -11.82918 -11.59094 -11.29033 -11.08275 -10.92512 -10.62025 -10.42388 -10.11363 -9.89623 -9.61587 -5.06905 -0.25544 0.16269 1.27824 1.61314 1.76188 1.95926 2.09245 2.65292 3.44249 3.50903 3.60616 3.71097 3.71691 3.75073 3.79071 3.84676 4.05759 4.12979 4.16982 4.19469 4.33263 4.35987 4.42285 4.44136 4.49972 4.53821 4.57004 4.58813 4.66754 4.68989 4.70626 4.75907 4.78138 4.84074 4.84271 4.89111 5.02158 5.04080 5.05260 5.06991 5.10845 5.12999 5.17177 5.22661 5.23520 5.25794 5.32608 5.39917 5.40412 5.47467 5.49514 5.56933 5.58162 5.66345 5.79448 6.50095 6.76807 7.18595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.137 4.137 4 C -0.033 4.033 5 C -0.119 4.119 6 C -0.140 4.140 7 C -0.070 4.070 8 O -0.550 6.550 9 Si 0.761 3.239 10 C -0.063 4.063 11 C -0.158 4.158 12 C 0.556 3.444 13 O -0.563 6.563 14 N -0.713 5.713 15 C 0.148 3.852 16 H 0.068 0.932 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.078 4.078 20 H 0.075 0.925 21 C -0.092 4.092 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.111 4.111 25 C -0.121 4.121 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.394 0.606 35 H -0.280 1.280 36 H -0.295 1.295 37 H 0.153 0.847 38 H 0.411 0.589 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.084 0.916 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -2.561 1.126 4.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.027 4.027 3 C -0.155 4.155 4 C -0.034 4.034 5 C -0.175 4.175 6 C -0.140 4.140 7 C -0.180 4.180 8 O -0.357 6.357 9 Si 0.666 3.334 10 C -0.081 4.081 11 C -0.161 4.161 12 C 0.345 3.655 13 O -0.443 6.443 14 N -0.364 5.364 15 C 0.044 3.956 16 H 0.086 0.914 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.096 4.096 20 H 0.093 0.907 21 C -0.110 4.110 22 C -0.208 4.208 23 C -0.206 4.206 24 C -0.149 4.149 25 C -0.158 4.158 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.244 0.756 35 H -0.206 1.206 36 H -0.222 1.222 37 H 0.170 0.830 38 H 0.249 0.751 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.101 0.899 51 H 0.077 0.923 52 H 0.103 0.897 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.233 -2.579 0.318 4.148 hybrid contribution -0.080 0.779 -0.394 0.877 sum 3.154 -1.799 -0.076 3.632 Atomic orbital electron populations 1.21013 0.90201 1.03080 1.03086 1.20215 0.96936 0.92023 0.93574 1.21175 0.93673 0.98004 1.02662 1.20221 0.93479 0.95970 0.93714 1.20927 1.00042 0.93094 1.03455 1.20199 0.96611 0.92795 1.04429 1.25147 0.91013 1.12383 0.89436 1.86488 1.75939 1.56799 1.16523 0.94193 0.77682 0.78420 0.83111 1.21179 0.92338 0.97885 0.96731 1.19706 0.93838 0.92862 1.09684 1.18427 0.86822 0.84418 0.75801 1.90734 1.15101 1.87500 1.50975 1.45952 1.11401 1.05201 1.73855 1.21015 0.95442 0.82277 0.96882 0.91384 1.21861 1.00290 0.97330 0.96826 1.21569 0.98103 0.93532 1.01612 1.21200 0.97895 0.93336 0.97210 0.90678 1.21126 0.98203 0.94724 0.96979 1.21910 1.01128 1.01259 0.96552 1.21893 0.99383 0.97723 1.01610 1.21593 1.00249 0.96670 0.96411 1.21802 0.98165 0.93096 1.02783 0.91129 0.90986 0.90456 0.83854 0.89965 0.90993 0.90484 0.87165 0.75568 1.20599 1.22245 0.82968 0.75147 0.93891 0.90985 0.91475 0.92701 0.91835 0.92624 0.92991 0.92642 0.92550 0.91788 0.93147 0.89939 0.92307 0.89692 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 8.73 71.24 0.62 -0.01 16 2 C -0.03 -0.12 5.91 -19.61 -0.12 -0.24 16 3 C -0.14 -0.26 9.31 22.23 0.21 -0.05 16 4 C -0.03 -0.03 5.89 -19.81 -0.12 -0.14 16 5 C -0.12 0.19 9.53 71.24 0.68 0.87 16 6 C -0.14 0.14 5.25 -19.90 -0.10 0.03 16 7 C -0.07 0.19 2.04 71.24 0.15 0.33 16 8 O -0.55 1.27 12.80 -148.98 -1.91 -0.63 16 9 Si 0.76 -3.58 29.92 68.60 2.05 -1.53 16 10 C -0.06 0.13 8.13 22.53 0.18 0.31 16 11 C -0.16 -0.50 5.87 -20.09 -0.12 -0.62 16 12 C 0.56 2.92 7.67 86.78 0.67 3.58 16 13 O -0.56 -6.88 13.00 -3.88 -0.05 -6.93 16 14 N -0.71 0.85 5.03 -445.41 -2.24 -1.39 16 15 C 0.15 -0.11 2.45 45.00 0.11 0.00 16 16 H 0.07 0.29 7.58 -2.39 -0.02 0.28 16 17 C -0.12 -0.06 5.49 30.59 0.17 0.10 16 18 C -0.11 0.07 4.85 30.59 0.15 0.22 16 19 C -0.08 0.26 1.77 -10.79 -0.02 0.24 16 20 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 21 C -0.09 0.21 2.51 -10.79 -0.03 0.18 16 22 C -0.15 0.23 8.84 71.98 0.64 0.86 16 23 C -0.15 0.47 8.84 71.98 0.64 1.11 16 24 C -0.11 0.53 4.85 30.59 0.15 0.68 16 25 C -0.12 0.72 5.39 30.60 0.16 0.88 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.14 8.04 -2.38 -0.02 0.12 16 28 H 0.08 0.74 5.85 -2.39 -0.01 0.73 16 29 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 30 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 -0.12 6.22 -2.39 -0.01 -0.13 16 32 H 0.08 -0.26 8.08 -2.39 -0.02 -0.28 16 33 H 0.11 -0.18 6.48 -2.39 -0.02 -0.20 16 34 H 0.39 -3.93 8.70 -74.06 -0.64 -4.57 16 35 H -0.28 0.03 7.11 99.48 0.71 0.73 16 36 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 37 H 0.15 -1.32 3.53 -2.91 -0.01 -1.33 16 38 H 0.41 -3.03 6.68 -92.71 -0.62 -3.65 16 39 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 41 H 0.07 -0.02 6.43 -2.39 -0.02 -0.04 16 42 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 45 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.05 -0.05 6.43 -2.39 -0.02 -0.07 16 47 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.06 -0.27 6.43 -2.39 -0.02 -0.28 16 49 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.08 -0.52 6.43 -2.38 -0.02 -0.53 16 51 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 52 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 53 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: 0.00 -15.24 397.21 1.55 -13.68 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: -0.32 Total: -11.54 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.01 Total: 8.34 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -2.24 Total: -1.39 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -1.96 Total: -7.57 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.53 kcal Total: -15.24 1.55 -13.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_9599494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.711 kcal (2) G-P(sol) polarization free energy of solvation -15.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds