Wall clock time and date at job start Sun Mar 7 2021 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47289 * 2 1 4 4 C 1.52996 * 109.47437 * 120.00430 * 2 1 3 5 5 H 1.09001 * 109.47241 * 300.00001 * 4 2 1 6 6 C 1.53002 * 109.47168 * 59.99636 * 4 2 1 7 7 C 1.53005 * 109.47143 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.46989 * 300.00282 * 7 6 4 9 9 H 1.09001 * 109.47027 * 299.99406 * 8 7 6 10 10 N 1.46505 * 109.47194 * 180.02562 * 8 7 6 11 11 C 1.34773 * 120.00536 * 154.99600 * 10 8 7 12 12 O 1.21284 * 119.99723 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00255 * 179.97438 * 11 10 8 14 14 N 1.46497 * 109.47118 * 179.97438 * 13 11 10 15 15 C 1.36837 * 125.06651 * 264.97697 * 14 13 11 16 16 C 1.34238 * 109.93565 * 180.02562 * 15 14 13 17 17 C 1.50699 * 126.49502 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47207 * 104.99891 * 17 16 15 19 19 Si 1.86300 * 109.47352 * 345.00180 * 17 16 15 20 20 C 1.46482 * 107.00425 * 0.02562 * 16 15 14 21 21 C 1.39585 * 134.03814 * 179.97438 * 20 16 15 22 22 C 1.36662 * 119.76703 * 180.02562 * 21 20 16 23 23 C 1.38791 * 120.52759 * 359.97438 * 22 21 20 24 24 C 1.37791 * 120.66406 * 0.30600 * 23 22 21 25 25 C 1.37694 * 125.06054 * 84.97994 * 14 13 11 26 26 C 1.52993 * 109.47459 * 59.99771 * 8 7 6 27 27 C 1.52993 * 109.47341 * 299.99866 * 26 8 7 28 28 H 1.08995 * 109.47061 * 299.99770 * 1 2 3 29 29 H 1.08992 * 109.46970 * 60.00034 * 1 2 3 30 30 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46687 * 240.00258 * 2 1 3 32 32 H 1.09002 * 109.47520 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47400 * 300.00358 * 3 2 1 34 34 H 1.09001 * 109.47299 * 60.00130 * 3 2 1 35 35 H 1.09001 * 109.47414 * 60.00394 * 6 4 2 36 36 H 1.09002 * 109.47469 * 300.00467 * 6 4 2 37 37 H 1.08997 * 109.47012 * 180.02562 * 7 6 4 38 38 H 1.08995 * 109.46951 * 60.00246 * 7 6 4 39 39 H 0.97001 * 119.99518 * 335.00226 * 10 8 7 40 40 H 1.09001 * 109.46464 * 60.00262 * 13 11 10 41 41 H 1.08997 * 109.47055 * 300.00591 * 13 11 10 42 42 H 1.07997 * 125.02601 * 0.04209 * 15 14 13 43 43 H 1.09005 * 109.47028 * 225.00170 * 17 16 15 44 44 H 0.96700 * 113.99780 * 179.97438 * 18 17 16 45 45 H 1.48499 * 109.99902 * 298.68302 * 19 17 16 46 46 H 1.48497 * 109.99945 * 59.99959 * 19 17 16 47 47 H 1.08005 * 120.11619 * 0.02625 * 21 20 16 48 48 H 1.08004 * 119.73504 * 180.02562 * 22 21 20 49 49 H 1.08002 * 119.66399 * 180.02562 * 23 22 21 50 50 H 1.08000 * 120.10582 * 179.72750 * 24 23 22 51 51 H 1.09007 * 109.47045 * 60.00148 * 26 8 7 52 52 H 1.09002 * 109.47520 * 179.97438 * 26 8 7 53 53 H 1.09001 * 109.47481 * 299.99748 * 27 26 8 54 54 H 1.09009 * 109.47535 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8850 2.4986 8 6 3.5696 -2.8849 2.4992 9 1 3.9332 -3.3989 1.6094 10 7 4.0575 -3.5760 3.6953 11 6 5.2794 -4.1446 3.6938 12 8 5.9753 -4.0838 2.7023 13 6 5.7815 -4.8549 4.9244 14 7 7.1243 -5.3826 4.6699 15 6 7.4028 -6.6565 4.2551 16 6 8.7288 -6.8135 4.1176 17 6 9.4424 -8.0664 3.6796 18 8 9.8915 -7.9125 2.3318 19 14 8.2750 -9.5146 3.7836 20 6 9.3507 -5.5360 4.4740 21 6 10.6689 -5.0802 4.5284 22 6 10.9269 -3.7942 4.9121 23 6 9.8884 -2.9369 5.2480 24 6 8.5802 -3.3677 5.2067 25 6 8.2941 -4.6705 4.8126 26 6 4.0796 -1.4425 2.4992 27 6 3.5701 -0.7214 1.2497 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.8933 -2.6777 0.3591 36 1 0.4400 -2.1639 1.2491 37 1 1.6767 -3.9127 2.4984 38 1 1.6760 -2.3711 3.3884 39 1 3.5011 -3.6243 4.4883 40 1 5.1089 -5.6769 5.1692 41 1 5.8180 -4.1545 5.7587 42 1 6.6649 -7.4221 4.0661 43 1 10.2991 -8.2429 4.3301 44 1 10.3609 -8.6827 1.9832 45 1 7.8256 -9.7050 5.1861 46 1 7.1027 -9.2863 2.9012 47 1 11.4821 -5.7416 4.2681 48 1 11.9470 -3.4419 4.9536 49 1 10.1081 -1.9232 5.5489 50 1 7.7793 -2.6943 5.4741 51 1 3.7159 -0.9286 3.3890 52 1 5.1696 -1.4425 2.5000 53 1 3.9338 -1.2353 0.3599 54 1 3.9331 0.3065 1.2499 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:09:10 Heat of formation + Delta-G solvation = -17.837631 kcal Electronic energy + Delta-G solvation = -32333.058554 eV Core-core repulsion = 28236.063957 eV Total energy + Delta-G solvation = -4096.994596 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.209 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65997 -41.19654 -39.82165 -38.13717 -37.64901 -36.76109 -34.51907 -34.01445 -31.99008 -31.61537 -30.39728 -29.99361 -28.54081 -28.05673 -25.81317 -24.18186 -23.68658 -23.55182 -22.68503 -21.68428 -21.23324 -20.67491 -20.61958 -18.63864 -18.37225 -18.28238 -17.81549 -17.22187 -16.63444 -16.52754 -16.22587 -15.74737 -15.59608 -15.34348 -15.26163 -15.04301 -14.92713 -14.84699 -14.63340 -14.59021 -14.40597 -14.26562 -14.18868 -13.64706 -13.47363 -13.38873 -13.11247 -12.85673 -12.78917 -12.71302 -12.66500 -12.53178 -12.36604 -12.16868 -12.10755 -12.05949 -11.82576 -11.68633 -11.39954 -11.37246 -11.06767 -10.97936 -10.64351 -10.20218 -10.18603 -9.27541 -8.75139 -4.96908 0.02460 0.55333 1.22999 1.32707 1.34071 1.56352 1.69172 1.97559 2.07895 2.86210 3.43027 3.46442 3.55465 3.59085 3.62466 3.66574 3.75287 3.79894 3.95472 3.96898 3.98282 4.05400 4.16261 4.21072 4.22196 4.26338 4.31117 4.33252 4.43573 4.46853 4.50094 4.59320 4.59994 4.61506 4.69403 4.72991 4.78633 4.81989 4.94476 4.96246 4.97645 5.02307 5.05533 5.08350 5.11751 5.13794 5.22748 5.29408 5.31884 5.41547 5.42593 5.49778 5.56934 5.57252 5.63867 5.64576 6.03235 6.13827 6.37670 6.98502 7.04603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.148 3.852 9 H 0.055 0.945 10 N -0.707 5.707 11 C 0.490 3.510 12 O -0.572 6.572 13 C 0.087 3.913 14 N -0.467 5.467 15 C 0.052 3.948 16 C -0.180 4.180 17 C -0.052 4.052 18 O -0.571 6.571 19 Si 0.790 3.210 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.137 4.137 25 C 0.090 3.910 26 C -0.121 4.121 27 C -0.112 4.112 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.420 0.580 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.174 0.826 43 H 0.080 0.920 44 H 0.398 0.602 45 H -0.282 1.282 46 H -0.295 1.295 47 H 0.129 0.871 48 H 0.145 0.855 49 H 0.150 0.850 50 H 0.132 0.868 51 H 0.079 0.921 52 H 0.037 0.963 53 H 0.047 0.953 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -1.482 4.617 6.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.098 0.902 6 C -0.151 4.151 7 C -0.154 4.154 8 C 0.043 3.957 9 H 0.073 0.927 10 N -0.360 5.360 11 C 0.275 3.725 12 O -0.450 6.450 13 C -0.038 4.038 14 N -0.150 5.150 15 C -0.073 4.073 16 C -0.188 4.188 17 C -0.161 4.161 18 O -0.380 6.380 19 Si 0.694 3.306 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.159 4.159 27 C -0.150 4.150 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.258 0.742 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.191 0.809 43 H 0.098 0.902 44 H 0.249 0.751 45 H -0.208 1.208 46 H -0.223 1.223 47 H 0.147 0.853 48 H 0.162 0.838 49 H 0.168 0.832 50 H 0.150 0.850 51 H 0.098 0.902 52 H 0.056 0.944 53 H 0.066 0.934 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.624 -1.032 4.253 7.126 hybrid contribution 0.076 0.653 0.020 0.658 sum -5.548 -0.380 4.273 7.013 Atomic orbital electron populations 1.21888 0.94665 1.02141 1.01867 1.21130 0.96160 0.96061 0.97780 1.21905 1.01005 0.96009 1.01883 1.21184 0.94007 0.95808 0.98414 0.90248 1.21609 1.01494 0.94775 0.97209 1.21754 0.91617 1.01936 1.00084 1.20962 0.95217 0.92070 0.87416 0.92699 1.45915 1.16813 1.55537 1.17748 1.21413 0.82057 0.79045 0.89985 1.90809 1.57261 1.60463 1.36512 1.21983 0.82464 1.02868 0.96461 1.43375 1.04822 1.09166 1.57650 1.21714 0.96452 0.87249 1.01934 1.20056 0.92547 0.95362 1.10795 1.24344 1.04897 1.01100 0.85734 1.86516 1.78530 1.46009 1.26984 0.94144 0.77604 0.81208 0.77691 1.19361 0.93856 0.93806 1.05348 1.20504 0.94395 0.96637 0.98479 1.20986 1.00488 0.93482 1.02040 1.21197 0.91310 1.00662 0.98941 1.20257 0.98208 0.92186 1.05066 1.18492 0.85313 0.94516 1.03218 1.21817 0.99359 0.95227 0.99520 1.21581 0.96066 1.00412 0.96909 0.92306 0.93032 0.91959 0.92151 0.92763 0.92897 0.92334 0.92805 0.89804 0.90654 0.89314 0.74210 0.82705 0.83405 0.80869 0.90184 0.75117 1.20810 1.22286 0.85339 0.83768 0.83220 0.84983 0.90236 0.94432 0.93369 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 8.84 71.98 0.64 1.01 16 2 C -0.09 0.12 2.51 -10.80 -0.03 0.10 16 3 C -0.15 0.14 8.84 71.98 0.64 0.77 16 4 C -0.08 0.18 1.77 -10.79 -0.02 0.16 16 5 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 6 C -0.11 0.38 4.85 30.60 0.15 0.53 16 7 C -0.12 0.58 5.39 30.59 0.16 0.75 16 8 C 0.15 0.04 2.45 44.99 0.11 0.15 16 9 H 0.05 0.41 7.58 -2.39 -0.02 0.39 16 10 N -0.71 1.95 5.08 -442.55 -2.25 -0.29 16 11 C 0.49 2.04 7.86 87.66 0.69 2.73 16 12 O -0.57 -9.53 16.08 -3.04 -0.05 -9.58 16 13 C 0.09 -0.14 6.48 85.63 0.56 0.41 16 14 N -0.47 -3.74 2.27 -520.00 -1.18 -4.92 16 15 C 0.05 0.50 9.89 83.00 0.82 1.32 16 16 C -0.18 -2.12 5.61 -18.63 -0.10 -2.23 16 17 C -0.05 -0.27 3.05 71.24 0.22 -0.05 16 18 O -0.57 -3.81 12.86 -148.98 -1.92 -5.73 16 19 Si 0.79 0.01 30.79 68.60 2.11 2.13 16 20 C -0.12 -1.65 6.35 -20.20 -0.13 -1.78 16 21 C -0.08 -0.88 10.05 22.23 0.22 -0.66 16 22 C -0.15 -1.11 9.97 22.03 0.22 -0.89 16 23 C -0.10 -0.65 10.01 22.30 0.22 -0.42 16 24 C -0.14 -1.11 10.00 22.37 0.22 -0.88 16 25 C 0.09 1.05 6.80 39.03 0.27 1.32 16 26 C -0.12 -0.15 5.49 30.59 0.17 0.02 16 27 C -0.11 -0.09 4.85 30.59 0.15 0.06 16 28 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.06 -0.21 6.43 -2.39 -0.02 -0.22 16 31 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.05 -0.01 6.43 -2.39 -0.02 -0.02 16 33 H 0.05 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.08 -0.43 6.43 -2.39 -0.02 -0.44 16 37 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.42 -4.50 8.60 -92.71 -0.80 -5.29 16 40 H 0.16 -1.40 8.12 -2.39 -0.02 -1.42 16 41 H 0.15 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H 0.17 0.95 6.30 -2.91 -0.02 0.93 16 43 H 0.08 0.16 7.96 -2.38 -0.02 0.14 16 44 H 0.40 -2.02 8.74 -74.06 -0.65 -2.66 16 45 H -0.28 -1.12 7.11 99.48 0.71 -0.42 16 46 H -0.30 -1.95 7.04 99.48 0.70 -1.25 16 47 H 0.13 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 49 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 50 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 51 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 52 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 53 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 54 H 0.07 0.05 6.43 -2.38 -0.02 0.04 16 Total: 0.00 -28.74 423.41 1.37 -27.37 By element: Atomic # 1 Polarization: -10.86 SS G_CDS: -0.52 Total: -11.38 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.17 Total: 2.41 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -3.43 Total: -5.21 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.96 Total: -15.31 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.11 Total: 2.13 kcal Total: -28.74 1.37 -27.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.529 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds